Wall clock time and date at job start Tue Mar 31 2020 05:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38834 * 119.73238 * 2 1 4 4 C 1.37746 * 120.66579 * 179.97438 * 3 2 1 5 5 C 1.39124 * 119.77911 * 359.76408 * 4 3 2 6 6 N 1.37689 * 133.50590 * 179.54784 * 5 4 3 7 7 H 0.97004 * 125.06376 * 0.71788 * 6 5 4 8 8 C 1.36836 * 109.87475 * 180.45920 * 6 5 4 9 9 C 1.34236 * 109.93046 * 0.26330 * 8 6 5 10 10 C 1.50699 * 126.50064 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.47106 * 147.77567 * 10 9 8 12 12 C 1.50694 * 109.47267 * 267.77526 * 10 9 8 13 13 O 1.20828 * 120.00200 * 89.87986 * 12 10 9 14 14 O 1.34231 * 120.00043 * 269.87776 * 12 10 9 15 15 N 1.46899 * 109.46976 * 27.77873 * 10 9 8 16 16 C 1.46959 * 110.99776 * 186.41762 * 15 10 9 17 17 C 1.53049 * 109.36279 * 176.80863 * 16 15 10 18 18 N 1.46953 * 109.36535 * 58.40062 * 17 16 15 19 19 C 1.46907 * 110.99957 * 176.80770 * 18 17 16 20 20 C 1.50693 * 109.46991 * 59.47864 * 19 18 17 21 21 H 1.08009 * 120.00288 * 355.97101 * 20 19 18 22 22 C 1.37879 * 120.00456 * 175.97170 * 20 19 18 23 23 N 1.31511 * 120.00392 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 119.99529 * 359.97438 * 22 20 19 25 25 H 1.48507 * 109.46943 * 90.00067 * 24 22 20 26 26 H 1.48496 * 109.46927 * 209.99918 * 24 22 20 27 27 H 1.48495 * 109.47223 * 330.00248 * 24 22 20 28 28 C 1.46949 * 110.88225 * 300.67965 * 18 17 16 29 29 C 1.46953 * 111.00350 * 62.61602 * 15 10 9 30 30 C 1.40673 * 119.33417 * 0.51135 * 5 4 3 31 31 C 1.36626 * 119.73810 * 179.97438 * 2 1 3 32 32 H 1.08989 * 109.47570 * 270.02107 * 1 2 3 33 33 H 1.09001 * 109.47095 * 30.02918 * 1 2 3 34 34 H 1.09005 * 109.46664 * 150.02334 * 1 2 3 35 35 H 1.07996 * 119.66629 * 359.97358 * 3 2 1 36 36 H 1.08004 * 120.11334 * 180.02562 * 4 3 2 37 37 H 1.07998 * 125.03350 * 180.24165 * 8 6 5 38 38 H 0.96703 * 117.00006 * 179.97438 * 14 12 10 39 39 H 1.09001 * 109.49154 * 296.77791 * 16 15 10 40 40 H 1.09002 * 109.49190 * 56.84586 * 16 15 10 41 41 H 1.09004 * 109.49355 * 298.43101 * 17 16 15 42 42 H 1.09001 * 109.49163 * 178.36800 * 17 16 15 43 43 H 1.09006 * 109.47029 * 179.47588 * 19 18 17 44 44 H 1.09000 * 109.47184 * 299.47393 * 19 18 17 45 45 H 0.97002 * 119.99473 * 180.02562 * 23 22 20 46 46 H 1.09001 * 109.49012 * 299.35041 * 28 18 17 47 47 H 1.09004 * 109.49073 * 179.29017 * 28 18 17 48 48 H 1.08993 * 109.49292 * 303.15821 * 29 15 10 49 49 H 1.09000 * 109.48878 * 63.20328 * 29 15 10 50 50 H 1.07995 * 120.11506 * 0.04258 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.2056 0.0000 4 6 3.5728 1.2280 0.0005 5 6 4.2833 0.0319 0.0060 6 7 5.6260 -0.2730 0.0001 7 1 6.3453 0.3778 0.0000 8 6 5.7947 -1.6310 0.0001 9 6 4.5987 -2.2406 0.0001 10 6 4.3502 -3.7269 -0.0005 11 1 3.4330 -3.9422 0.5476 12 6 4.2127 -4.2127 -1.4203 13 8 5.1892 -4.5778 -2.0312 14 8 3.0054 -4.2399 -2.0065 15 7 5.4782 -4.4122 0.6445 16 6 5.3445 -5.8710 0.5278 17 6 6.5752 -6.5440 1.1402 18 7 6.7015 -6.1404 2.5476 19 6 7.8295 -6.8258 3.1925 20 6 9.1052 -6.4870 2.4654 21 1 9.0730 -5.8814 1.5717 22 6 10.3138 -6.9500 2.9410 23 7 11.4270 -6.6547 2.3062 24 14 10.3697 -7.9968 4.4872 25 1 10.2477 -9.4303 4.1192 26 1 11.6591 -7.7740 5.1894 27 1 9.2468 -7.6182 5.3822 28 6 6.8352 -4.6817 2.6643 29 6 5.6046 -4.0087 2.0519 30 6 3.5810 -1.1869 0.0001 31 6 2.1847 -1.1863 0.0005 32 1 -0.3634 0.0004 1.0275 33 1 -0.3633 0.8897 -0.5143 34 1 -0.3633 -0.8903 -0.5135 35 1 1.6457 2.1351 -0.0004 36 1 4.0994 2.1710 0.0009 37 1 6.7486 -2.1372 -0.0003 38 1 2.9673 -4.5591 -2.9185 39 1 4.4498 -6.1978 1.0578 40 1 5.2653 -6.1460 -0.5239 41 1 7.4669 -6.2385 0.5928 42 1 6.4649 -7.6268 1.0809 43 1 7.9060 -6.5020 4.2306 44 1 7.6673 -7.9031 3.1591 45 1 12.2771 -6.9809 2.6407 46 1 7.7299 -4.3549 2.1343 47 1 6.9145 -4.4067 3.7161 48 1 5.7149 -2.9260 2.1113 49 1 4.7127 -4.3139 2.5992 50 1 1.6423 -2.1202 0.0003 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020728371.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:24 Heat of formation + Delta-G solvation = -34.286052 kcal Electronic energy + Delta-G solvation = -32568.788650 eV Core-core repulsion = 28367.540454 eV Total energy + Delta-G solvation = -4201.248197 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.47990 -41.34432 -39.95541 -38.30007 -37.27605 -36.69869 -34.59594 -33.34980 -32.33816 -31.85800 -31.11165 -29.50790 -28.19681 -27.11441 -25.98245 -24.56947 -23.52271 -23.28346 -22.70963 -21.97027 -20.75814 -20.21298 -19.10871 -18.91512 -18.79237 -17.73608 -17.36962 -16.93314 -16.61665 -16.17600 -15.91211 -15.83952 -15.73134 -15.51038 -15.40031 -15.05287 -14.94709 -14.60767 -14.45182 -14.26080 -14.12214 -13.93630 -13.71984 -13.52473 -13.32099 -12.98295 -12.87637 -12.76078 -12.51629 -12.41609 -12.37009 -12.14605 -12.06496 -12.00267 -11.82456 -11.80550 -11.68603 -11.51210 -11.37638 -10.78128 -10.52244 -9.43123 -9.01558 -9.00156 -8.60476 -8.29526 -6.34815 0.20213 0.68158 1.11908 1.36822 1.37746 1.49609 1.55704 2.02336 2.21853 2.34929 2.82823 3.00331 3.05064 3.30028 3.76169 3.79213 3.92317 3.96461 4.10127 4.17734 4.19444 4.31594 4.39274 4.42691 4.43965 4.52268 4.56552 4.64763 4.66433 4.72364 4.83133 4.91727 4.95825 4.97502 5.00389 5.03343 5.11084 5.15747 5.19367 5.21792 5.31788 5.50711 5.51919 5.58073 5.72212 5.76164 5.83031 5.92840 5.94567 6.13694 6.25235 6.34006 6.39178 6.64313 6.72850 7.02097 7.31729 8.86823 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.015489 B = 0.002583 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.285487 B =10838.575360 C =11441.082337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.115 4.115 3 C -0.102 4.102 4 C -0.128 4.128 5 C 0.075 3.925 6 N -0.584 5.584 7 H 0.430 0.570 8 C 0.099 3.901 9 C -0.197 4.197 10 C 0.184 3.816 11 H 0.088 0.912 12 C 0.492 3.508 13 O -0.530 6.530 14 O -0.506 6.506 15 N -0.531 5.531 16 C 0.065 3.935 17 C 0.071 3.929 18 N -0.528 5.528 19 C 0.159 3.841 20 C -0.547 4.547 21 H 0.034 0.966 22 C 0.009 3.991 23 N -0.949 5.949 24 Si 0.950 3.050 25 H -0.268 1.268 26 H -0.286 1.286 27 H -0.242 1.242 28 C 0.066 3.934 29 C 0.079 3.921 30 C -0.106 4.106 31 C -0.086 4.086 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.150 0.850 36 H 0.142 0.858 37 H 0.171 0.829 38 H 0.426 0.574 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.014 0.986 42 H 0.072 0.928 43 H 0.036 0.964 44 H 0.029 0.971 45 H 0.265 0.735 46 H 0.018 0.982 47 H 0.078 0.922 48 H 0.090 0.910 49 H 0.052 0.948 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.187 15.762 -4.669 29.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.116 4.116 3 C -0.121 4.121 4 C -0.149 4.149 5 C -0.032 4.032 6 N -0.187 5.187 7 H 0.269 0.731 8 C -0.030 4.030 9 C -0.205 4.205 10 C 0.074 3.926 11 H 0.106 0.894 12 C 0.333 3.667 13 O -0.418 6.418 14 O -0.319 6.319 15 N -0.258 5.258 16 C -0.063 4.063 17 C -0.058 4.058 18 N -0.252 5.252 19 C 0.032 3.968 20 C -0.585 4.585 21 H 0.052 0.948 22 C -0.189 4.189 23 N -0.590 5.590 24 Si 0.774 3.226 25 H -0.194 1.194 26 H -0.212 1.212 27 H -0.166 1.166 28 C -0.063 4.063 29 C -0.049 4.049 30 C -0.111 4.111 31 C -0.105 4.105 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.167 0.833 36 H 0.159 0.841 37 H 0.188 0.812 38 H 0.288 0.712 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.033 0.967 42 H 0.090 0.910 43 H 0.054 0.946 44 H 0.047 0.953 45 H 0.074 0.926 46 H 0.036 0.964 47 H 0.096 0.904 48 H 0.108 0.892 49 H 0.070 0.930 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -23.636 15.857 -4.445 28.807 hybrid contribution 1.666 -0.702 -0.402 1.852 sum -21.970 15.155 -4.847 27.127 Atomic orbital electron populations 1.20761 0.89425 1.03390 1.02794 1.19718 0.97377 0.92464 1.02081 1.21050 0.92829 0.98468 0.99755 1.20329 0.94260 0.95025 1.05255 1.18523 0.83646 0.95685 1.05328 1.41804 1.06252 1.06552 1.64101 0.73062 1.21768 0.99653 0.82343 0.99277 1.19385 0.92523 0.90956 1.17663 1.19074 0.94753 0.90452 0.88310 0.89409 1.23326 0.80428 0.73105 0.89804 1.90739 1.40487 1.44972 1.65605 1.84479 1.32681 1.79279 1.35494 1.61804 1.40864 1.06661 1.16448 1.22195 0.97347 0.86343 1.00428 1.21856 0.96097 0.99025 0.88853 1.62674 1.41686 1.06558 1.14252 1.20059 0.87079 0.94794 0.94887 1.21907 0.92515 1.32676 1.11444 0.94821 1.25949 0.95012 0.97248 1.00675 1.70097 0.98897 1.47674 1.42318 0.85665 0.78224 0.79160 0.79572 1.19356 1.21175 1.16577 1.21972 0.96263 0.88026 1.00036 1.22106 0.97217 1.00086 0.85452 1.19095 0.93600 0.91581 1.06807 1.20300 0.91216 0.98734 1.00238 0.90769 0.90438 0.91404 0.83263 0.84066 0.81166 0.71206 0.92725 0.90652 0.96733 0.90959 0.94629 0.95289 0.92626 0.96400 0.90383 0.89164 0.93004 0.85622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.99 71.23 0.71 -0.45 16 2 C -0.12 -1.91 5.85 -20.10 -0.12 -2.02 16 3 C -0.10 -1.53 9.66 22.30 0.22 -1.31 16 4 C -0.13 -2.14 10.08 22.37 0.23 -1.91 16 5 C 0.07 1.59 7.28 39.03 0.28 1.87 16 6 N -0.58 -11.66 6.07 -187.61 -1.14 -12.80 16 7 H 0.43 6.02 8.96 -92.71 -0.83 5.19 16 8 C 0.10 2.47 9.96 83.00 0.83 3.30 16 9 C -0.20 -5.07 4.49 -18.63 -0.08 -5.15 16 10 C 0.18 4.88 2.48 43.42 0.11 4.99 16 11 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 12 C 0.49 13.41 6.34 71.23 0.45 13.86 16 13 O -0.53 -18.35 16.00 21.96 0.35 -18.00 16 14 O -0.51 -9.92 13.42 -51.42 -0.69 -10.61 16 15 N -0.53 -16.61 3.96 -879.32 -3.49 -20.09 16 16 C 0.06 2.13 5.20 86.31 0.45 2.58 16 17 C 0.07 2.88 5.24 86.31 0.45 3.33 16 18 N -0.53 -21.94 4.92 -900.28 -4.43 -26.36 16 19 C 0.16 7.59 4.23 85.55 0.36 7.95 16 20 C -0.55 -31.36 8.23 25.60 0.21 -31.15 16 21 H 0.03 2.19 6.06 -2.91 -0.02 2.17 16 22 C 0.01 0.51 5.47 84.66 0.46 0.98 16 23 N -0.95 -60.01 13.96 21.45 0.30 -59.71 16 24 Si 0.95 44.08 27.55 68.60 1.89 45.97 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 27 H -0.24 -10.33 6.43 99.48 0.64 -9.69 16 28 C 0.07 2.52 5.31 86.31 0.46 2.97 16 29 C 0.08 2.37 5.29 86.31 0.46 2.83 16 30 C -0.11 -2.51 6.35 -20.20 -0.13 -2.64 16 31 C -0.09 -1.76 9.67 22.23 0.22 -1.54 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 34 H 0.07 0.70 8.08 -2.38 -0.02 0.68 16 35 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 36 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 37 H 0.17 4.62 8.01 -2.91 -0.02 4.60 16 38 H 0.43 4.72 9.10 -74.06 -0.67 4.05 16 39 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.08 2.53 5.89 -2.39 -0.01 2.52 16 41 H 0.01 0.71 6.48 -2.38 -0.02 0.70 16 42 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 43 H 0.04 1.66 6.90 -2.38 -0.02 1.65 16 44 H 0.03 1.36 7.77 -2.39 -0.02 1.34 16 45 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 46 H 0.02 0.81 6.92 -2.39 -0.02 0.79 16 47 H 0.08 2.82 8.13 -2.38 -0.02 2.80 16 48 H 0.09 2.50 6.20 -2.39 -0.01 2.49 16 49 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.13 2.34 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -75.99 397.40 -2.23 -78.21 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: -0.58 Total: 24.92 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 5.56 Total: -1.52 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -8.75 Total: -118.97 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.34 Total: -28.61 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.89 Total: 45.97 kcal Total: -75.99 -2.23 -78.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020728371.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.925 kcal (2) G-P(sol) polarization free energy of solvation -75.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds