Wall clock time and date at job start Tue Mar 31 2020 04:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29427 * 125.59528 * 2 1 4 4 N 1.40167 * 108.13958 * 179.85173 * 3 2 1 5 5 C 1.46501 * 126.32964 * 180.16258 * 4 3 2 6 6 N 1.46893 * 109.47374 * 265.18550 * 5 4 3 7 7 C 1.46904 * 110.99996 * 75.11942 * 6 5 4 8 8 C 1.50705 * 109.47005 * 189.99718 * 7 6 5 9 9 H 1.07993 * 119.99917 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99346 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99607 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 120.00624 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.46989 * 89.99637 * 12 10 8 14 14 H 1.48496 * 109.47283 * 209.99675 * 12 10 8 15 15 H 1.48503 * 109.46607 * 329.99705 * 12 10 8 16 16 C 1.46904 * 110.99984 * 199.06965 * 6 5 4 17 17 C 1.53001 * 109.47219 * 75.79274 * 16 6 5 18 18 C 1.47190 * 109.47675 * 174.87244 * 17 16 6 19 19 N 8.82448 * 165.55663 * 322.52292 * 2 1 3 20 20 C 1.34930 * 107.33593 * 0.40843 * 4 3 2 21 21 S 1.71201 * 126.29932 * 179.72367 * 20 4 3 22 22 N 1.34821 * 107.40823 * 359.75861 * 20 4 3 23 23 C 1.40122 * 125.84634 * 179.97438 * 22 20 4 24 24 C 1.38844 * 120.06965 * 114.75181 * 23 22 20 25 25 C 1.38113 * 119.93107 * 179.72374 * 24 23 22 26 26 C 1.38280 * 120.07033 * 0.54653 * 25 24 23 27 27 C 1.38282 * 120.13424 * 359.72735 * 26 25 24 28 28 C 1.38124 * 120.06636 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.47575 * 269.69955 * 1 2 3 30 30 H 1.09006 * 109.47309 * 29.69489 * 1 2 3 31 31 H 1.09000 * 109.47097 * 149.69734 * 1 2 3 32 32 H 1.09002 * 109.47264 * 25.19238 * 5 4 3 33 33 H 1.09002 * 109.46791 * 145.18464 * 5 4 3 34 34 H 1.08992 * 109.46965 * 309.99852 * 7 6 5 35 35 H 1.08998 * 109.47119 * 69.99766 * 7 6 5 36 36 H 0.97003 * 120.00234 * 180.02562 * 11 10 8 37 37 H 1.09003 * 109.47266 * 195.78799 * 16 6 5 38 38 H 1.08997 * 109.47466 * 315.79381 * 16 6 5 39 39 H 1.09007 * 109.46641 * 294.87176 * 17 16 6 40 40 H 1.09002 * 109.47004 * 54.86774 * 17 16 6 41 41 H 1.07999 * 120.03516 * 359.97438 * 24 23 22 42 42 H 1.08003 * 119.97017 * 180.29784 * 25 24 23 43 43 H 1.07999 * 119.93738 * 179.74912 * 26 25 24 44 44 H 1.08000 * 119.96888 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.03262 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2604 1.0524 0.0000 4 7 3.5975 0.6320 0.0034 5 6 4.7794 1.4975 0.0080 6 7 5.2473 1.6947 -1.3704 7 6 4.3732 2.6272 -2.0947 8 6 4.7314 2.6173 -3.5586 9 1 5.5283 1.9816 -3.9151 10 6 4.0410 3.4191 -4.4425 11 7 4.3532 3.4101 -5.7200 12 14 2.6621 4.5181 -3.8258 13 1 3.2170 5.8417 -3.4446 14 1 1.6523 4.6954 -4.9000 15 1 2.0209 3.8906 -2.6423 16 6 6.6419 2.1559 -1.3921 17 6 7.5726 0.9804 -1.0870 18 6 8.9723 1.4129 -1.2293 19 7 10.0526 1.7467 -1.3392 20 6 3.5947 -0.7173 -0.0037 21 16 4.9723 -1.7337 -0.0099 22 7 2.3074 -1.1180 -0.0059 23 6 1.8615 -2.4463 -0.0134 24 6 1.1632 -2.9520 1.0750 25 6 0.7201 -4.2600 1.0621 26 6 0.9809 -5.0692 -0.0285 27 6 1.6809 -4.5702 -1.1116 28 6 2.1214 -3.2611 -1.1072 29 1 -0.3634 -0.0054 1.0276 30 1 -0.3634 0.8927 -0.5091 31 1 -0.3633 -0.8873 -0.5185 32 1 4.5219 2.4620 0.4458 33 1 5.5693 1.0307 0.5965 34 1 3.3345 2.3205 -1.9728 35 1 4.5044 3.6328 -1.6953 36 1 3.8677 3.9744 -6.3420 37 1 6.8762 2.5584 -2.3776 38 1 6.7795 2.9328 -0.6402 39 1 7.4006 0.6361 -0.0671 40 1 7.3710 0.1669 -1.7839 41 1 0.9634 -2.3219 1.9290 42 1 0.1727 -4.6526 1.9063 43 1 0.6368 -6.0929 -0.0346 44 1 1.8835 -5.2047 -1.9618 45 1 2.6678 -2.8718 -1.9536 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021321069.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:04 Heat of formation + Delta-G solvation = 168.300385 kcal Electronic energy + Delta-G solvation = -29113.013580 eV Core-core repulsion = 25259.762718 eV Total energy + Delta-G solvation = -3853.250862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 357.132 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.89693 -39.46477 -37.87302 -36.21559 -35.06580 -33.58476 -32.68933 -31.37044 -31.12803 -30.16999 -29.43193 -27.64115 -25.79139 -23.60043 -23.30486 -22.93197 -22.52748 -21.14411 -20.42303 -18.83489 -17.24398 -17.18814 -16.91634 -16.77120 -16.50021 -16.13900 -15.35772 -14.84360 -14.75275 -14.56538 -14.45316 -14.28245 -13.78925 -13.66411 -13.58652 -13.31262 -13.11455 -13.00623 -12.70021 -12.44034 -12.37253 -12.16067 -12.13861 -11.81300 -11.76442 -11.64969 -11.21156 -11.10354 -10.91611 -10.86072 -10.62449 -10.55711 -10.16689 -9.94543 -9.43650 -9.31059 -9.18584 -8.69576 -7.92537 -7.44941 -7.33292 -6.15724 -4.14916 0.68897 1.03794 1.21412 1.45186 1.61770 2.40079 2.50812 3.05648 3.12012 3.18910 3.27393 3.29311 3.32468 4.00992 4.12399 4.28366 4.31582 4.52246 4.58185 4.70332 4.78154 4.88972 4.97995 5.02756 5.05304 5.15662 5.18347 5.23152 5.27630 5.32992 5.43901 5.47607 5.50646 5.65791 5.86453 5.97023 6.02986 6.11339 6.15213 6.24267 6.36605 6.39344 6.63652 6.68917 6.76657 7.18460 7.35040 7.53697 7.68520 7.88848 8.46847 8.92372 9.44188 10.96767 Molecular weight = 357.13amu Principal moments of inertia in cm(-1) A = 0.008584 B = 0.003851 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3261.033185 B = 7268.244606 C = 9185.773623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.268 3.732 3 N -0.265 5.265 4 N -0.358 5.358 5 C 0.303 3.697 6 N -0.531 5.531 7 C 0.162 3.838 8 C -0.515 4.515 9 H 0.084 0.916 10 C 0.073 3.927 11 N -0.894 5.894 12 Si 0.869 3.131 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.265 1.265 16 C 0.075 3.925 17 C -0.027 4.027 18 C 0.221 3.779 19 N -0.456 5.456 20 C 0.480 3.520 21 S -0.570 6.570 22 N -0.456 5.456 23 C 0.124 3.876 24 C -0.101 4.101 25 C -0.113 4.113 26 C -0.103 4.103 27 C -0.106 4.106 28 C -0.073 4.073 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.035 0.965 35 H -0.010 1.010 36 H 0.265 0.735 37 H 0.110 0.890 38 H 0.038 0.962 39 H 0.105 0.895 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.134 0.866 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.539 -12.814 15.789 24.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.011 4.011 3 N -0.085 5.085 4 N -0.150 5.150 5 C 0.092 3.908 6 N -0.256 5.256 7 C 0.036 3.964 8 C -0.553 4.553 9 H 0.102 0.898 10 C -0.129 4.129 11 N -0.532 5.532 12 Si 0.696 3.304 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.189 1.189 16 C -0.055 4.055 17 C -0.068 4.068 18 C -0.097 4.097 19 N -0.133 5.133 20 C 0.122 3.878 21 S -0.441 6.441 22 N -0.155 5.155 23 C 0.034 3.966 24 C -0.120 4.120 25 C -0.131 4.131 26 C -0.121 4.121 27 C -0.125 4.125 28 C -0.092 4.092 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.111 0.889 32 H 0.094 0.906 33 H 0.136 0.864 34 H 0.053 0.947 35 H 0.008 0.992 36 H 0.075 0.925 37 H 0.128 0.872 38 H 0.056 0.944 39 H 0.123 0.877 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.152 0.848 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.033 -12.077 15.194 22.326 hybrid contribution -1.852 1.160 0.441 2.230 sum -12.885 -10.917 15.635 23.014 Atomic orbital electron populations 1.20511 0.82110 1.05947 1.04984 1.24894 0.97199 0.81231 0.97771 1.77274 0.88216 1.20560 1.22430 1.49485 1.04535 1.03523 1.57455 1.22288 0.82581 0.92021 0.93866 1.61514 1.02855 1.51044 1.10203 1.20316 0.92614 0.88287 0.95141 1.20952 1.20025 1.25174 0.89136 0.89755 1.24859 0.96790 0.96563 0.94729 1.69884 1.41348 1.39741 1.02244 0.86951 0.82877 0.81543 0.79008 1.20188 1.21102 1.18935 1.21862 0.85755 0.93599 1.04236 1.19412 0.81239 1.00550 1.05589 1.29292 0.95069 0.92870 0.92459 1.81158 1.13050 1.09348 1.09762 1.23845 0.89497 0.87673 0.86802 1.93177 1.22854 1.55218 1.72869 1.43427 1.04656 1.06265 1.61148 1.17267 1.01914 0.81002 0.96390 1.21058 0.98448 0.96337 0.96207 1.20984 1.00428 0.92822 0.98913 1.21330 0.97397 0.99998 0.93397 1.21099 0.97707 0.94587 0.99128 1.21262 0.97035 0.93889 0.97055 0.88458 0.87728 0.88921 0.90609 0.86353 0.94684 0.99188 0.92526 0.87198 0.94351 0.87729 0.85827 0.85540 0.85056 0.85295 0.84806 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.05 36.01 0.36 -0.19 16 2 C 0.27 3.32 7.91 -154.01 -1.22 2.10 16 3 N -0.26 -4.08 11.87 33.00 0.39 -3.69 16 4 N -0.36 -5.81 3.53 -65.00 -0.23 -6.04 16 5 C 0.30 4.63 5.73 -63.32 -0.36 4.27 16 6 N -0.53 -9.71 4.54 -239.98 -1.09 -10.80 16 7 C 0.16 3.59 3.67 -4.97 -0.02 3.57 16 8 C -0.51 -13.73 8.79 -34.44 -0.30 -14.03 16 9 H 0.08 2.46 7.56 -52.49 -0.40 2.06 16 10 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 11 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 12 Si 0.87 20.59 27.47 -169.99 -4.67 15.92 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 16 C 0.07 1.20 4.75 -3.82 -0.02 1.18 16 17 C -0.03 -0.38 5.75 -29.52 -0.17 -0.55 16 18 C 0.22 3.45 15.43 -20.76 -0.32 3.13 16 19 N -0.46 -8.19 18.54 42.15 0.78 -7.41 16 20 C 0.48 7.82 7.77 -86.74 -0.67 7.14 16 21 S -0.57 -10.23 29.77 -107.50 -3.20 -13.43 16 22 N -0.46 -6.15 2.77 -58.69 -0.16 -6.32 16 23 C 0.12 1.41 4.82 -83.62 -0.40 1.00 16 24 C -0.10 -0.86 9.77 -39.40 -0.38 -1.24 16 25 C -0.11 -0.76 10.04 -39.61 -0.40 -1.16 16 26 C -0.10 -0.71 10.04 -39.55 -0.40 -1.10 16 27 C -0.11 -0.91 10.04 -39.61 -0.40 -1.31 16 28 C -0.07 -0.83 9.60 -39.40 -0.38 -1.20 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.56 7.84 -51.93 -0.41 0.15 16 32 H 0.08 1.07 8.01 -51.93 -0.42 0.65 16 33 H 0.12 1.58 6.28 -51.93 -0.33 1.25 16 34 H 0.04 0.82 6.21 -51.93 -0.32 0.50 16 35 H -0.01 -0.21 7.55 -51.93 -0.39 -0.60 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.11 2.09 6.57 -51.93 -0.34 1.75 16 38 H 0.04 0.54 8.00 -51.93 -0.42 0.12 16 39 H 0.10 1.26 6.90 -51.93 -0.36 0.91 16 40 H 0.12 1.86 8.14 -51.93 -0.42 1.44 16 41 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 43 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 44 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 45 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 400.76 15.07 6.04 6.04 Total: -1.00 -35.36 400.76 -12.47 -47.82 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.92 Total: 0.13 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: -5.18 Total: 3.55 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: 0.47 Total: -60.03 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Atomic # 16 Polarization: -10.23 SS G_CDS: -3.20 Total: -13.43 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.36 -12.47 -47.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021321069.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.124 kcal (2) G-P(sol) polarization free energy of solvation -35.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds