Wall clock time and date at job start Tue Mar 31 2020 04:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29427 * 125.59528 * 2 1 4 4 N 1.40167 * 108.13958 * 179.85173 * 3 2 1 5 5 C 1.46501 * 126.32964 * 180.16258 * 4 3 2 6 6 N 1.46893 * 109.47374 * 265.18550 * 5 4 3 7 7 C 1.46904 * 110.99996 * 75.11942 * 6 5 4 8 8 C 1.50705 * 109.47005 * 189.99718 * 7 6 5 9 9 H 1.07993 * 119.99917 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99346 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99607 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 120.00624 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.46989 * 89.99637 * 12 10 8 14 14 H 1.48496 * 109.47283 * 209.99675 * 12 10 8 15 15 H 1.48503 * 109.46607 * 329.99705 * 12 10 8 16 16 C 1.46904 * 110.99984 * 199.06965 * 6 5 4 17 17 C 1.53001 * 109.47219 * 75.79274 * 16 6 5 18 18 C 1.47190 * 109.47675 * 174.87244 * 17 16 6 19 19 N 8.82448 * 165.55663 * 322.52292 * 2 1 3 20 20 C 1.34930 * 107.33593 * 0.40843 * 4 3 2 21 21 S 1.71201 * 126.29932 * 179.72367 * 20 4 3 22 22 N 1.34821 * 107.40823 * 359.75861 * 20 4 3 23 23 C 1.40122 * 125.84634 * 179.97438 * 22 20 4 24 24 C 1.38844 * 120.06965 * 114.75181 * 23 22 20 25 25 C 1.38113 * 119.93107 * 179.72374 * 24 23 22 26 26 C 1.38280 * 120.07033 * 0.54653 * 25 24 23 27 27 C 1.38282 * 120.13424 * 359.72735 * 26 25 24 28 28 C 1.38124 * 120.06636 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.47575 * 269.69955 * 1 2 3 30 30 H 1.09006 * 109.47309 * 29.69489 * 1 2 3 31 31 H 1.09000 * 109.47097 * 149.69734 * 1 2 3 32 32 H 1.09002 * 109.47264 * 25.19238 * 5 4 3 33 33 H 1.09002 * 109.46791 * 145.18464 * 5 4 3 34 34 H 1.08992 * 109.46965 * 309.99852 * 7 6 5 35 35 H 1.08998 * 109.47119 * 69.99766 * 7 6 5 36 36 H 0.97003 * 120.00234 * 180.02562 * 11 10 8 37 37 H 1.09003 * 109.47266 * 195.78799 * 16 6 5 38 38 H 1.08997 * 109.47466 * 315.79381 * 16 6 5 39 39 H 1.09007 * 109.46641 * 294.87176 * 17 16 6 40 40 H 1.09002 * 109.47004 * 54.86774 * 17 16 6 41 41 H 1.07999 * 120.03516 * 359.97438 * 24 23 22 42 42 H 1.08003 * 119.97017 * 180.29784 * 25 24 23 43 43 H 1.07999 * 119.93738 * 179.74912 * 26 25 24 44 44 H 1.08000 * 119.96888 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.03262 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2604 1.0524 0.0000 4 7 3.5975 0.6320 0.0034 5 6 4.7794 1.4975 0.0080 6 7 5.2473 1.6947 -1.3704 7 6 4.3732 2.6272 -2.0947 8 6 4.7314 2.6173 -3.5586 9 1 5.5283 1.9816 -3.9151 10 6 4.0410 3.4191 -4.4425 11 7 4.3532 3.4101 -5.7200 12 14 2.6621 4.5181 -3.8258 13 1 3.2170 5.8417 -3.4446 14 1 1.6523 4.6954 -4.9000 15 1 2.0209 3.8906 -2.6423 16 6 6.6419 2.1559 -1.3921 17 6 7.5726 0.9804 -1.0870 18 6 8.9723 1.4129 -1.2293 19 7 10.0526 1.7467 -1.3392 20 6 3.5947 -0.7173 -0.0037 21 16 4.9723 -1.7337 -0.0099 22 7 2.3074 -1.1180 -0.0059 23 6 1.8615 -2.4463 -0.0134 24 6 1.1632 -2.9520 1.0750 25 6 0.7201 -4.2600 1.0621 26 6 0.9809 -5.0692 -0.0285 27 6 1.6809 -4.5702 -1.1116 28 6 2.1214 -3.2611 -1.1072 29 1 -0.3634 -0.0054 1.0276 30 1 -0.3634 0.8927 -0.5091 31 1 -0.3633 -0.8873 -0.5185 32 1 4.5219 2.4620 0.4458 33 1 5.5693 1.0307 0.5965 34 1 3.3345 2.3205 -1.9728 35 1 4.5044 3.6328 -1.6953 36 1 3.8677 3.9744 -6.3420 37 1 6.8762 2.5584 -2.3776 38 1 6.7795 2.9328 -0.6402 39 1 7.4006 0.6361 -0.0671 40 1 7.3710 0.1669 -1.7839 41 1 0.9634 -2.3219 1.9290 42 1 0.1727 -4.6526 1.9063 43 1 0.6368 -6.0929 -0.0346 44 1 1.8835 -5.2047 -1.9618 45 1 2.6678 -2.8718 -1.9536 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021321069.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:03 Heat of formation + Delta-G solvation = 148.574154 kcal Electronic energy + Delta-G solvation = -29113.868973 eV Core-core repulsion = 25259.762718 eV Total energy + Delta-G solvation = -3854.106256 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 357.132 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.97039 -40.22162 -39.22187 -37.56074 -36.15182 -34.83361 -34.44585 -32.51168 -31.98642 -31.21501 -30.39633 -29.10848 -27.03049 -24.74113 -24.57219 -24.07112 -23.39024 -22.06904 -21.95812 -19.80203 -19.04776 -18.55668 -17.92612 -17.88209 -17.62605 -17.07025 -16.54781 -16.46339 -15.89000 -15.55946 -15.44755 -15.35455 -15.09174 -14.76038 -14.46861 -14.42564 -14.18298 -14.05494 -13.94903 -13.72986 -13.53379 -13.49437 -13.26888 -13.10833 -12.77205 -12.70428 -12.55343 -12.49250 -12.35526 -12.16043 -11.92038 -11.82706 -11.67943 -11.56237 -11.31786 -10.81436 -9.96465 -9.89658 -9.37424 -8.77614 -8.68563 -8.29907 -6.33603 -0.19512 0.17047 0.31314 0.39481 0.66439 1.21421 1.31748 1.33306 1.44056 1.49533 1.73037 1.80766 2.31408 2.65963 2.75619 3.03374 3.05142 3.34946 3.48299 3.82704 3.92740 3.93422 4.03309 4.08039 4.14185 4.22177 4.24539 4.45751 4.50511 4.53992 4.56093 4.60233 4.62283 4.73923 4.81083 4.90288 5.03614 5.04837 5.08138 5.17795 5.34879 5.36965 5.49284 5.53282 5.59374 5.79613 5.99868 6.10725 6.14004 6.45616 6.58779 6.73944 7.29505 8.86354 Molecular weight = 357.13amu Principal moments of inertia in cm(-1) A = 0.008584 B = 0.003851 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3261.033185 B = 7268.244606 C = 9185.773623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.280 3.720 3 N -0.299 5.299 4 N -0.364 5.364 5 C 0.301 3.699 6 N -0.547 5.547 7 C 0.178 3.822 8 C -0.514 4.514 9 H 0.042 0.958 10 C 0.012 3.988 11 N -0.946 5.946 12 Si 0.940 3.060 13 H -0.266 1.266 14 H -0.285 1.285 15 H -0.248 1.248 16 C 0.079 3.921 17 C -0.010 4.010 18 C 0.244 3.756 19 N -0.493 5.493 20 C 0.476 3.524 21 S -0.625 6.625 22 N -0.449 5.449 23 C 0.095 3.905 24 C -0.097 4.097 25 C -0.103 4.103 26 C -0.093 4.093 27 C -0.112 4.112 28 C -0.098 4.098 29 H 0.132 0.868 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.138 0.862 34 H 0.027 0.973 35 H -0.001 1.001 36 H 0.266 0.734 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.133 0.867 40 H 0.112 0.888 41 H 0.144 0.856 42 H 0.168 0.832 43 H 0.162 0.838 44 H 0.146 0.854 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.886 -13.645 19.114 28.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.002 3.998 3 N -0.120 5.120 4 N -0.154 5.154 5 C 0.092 3.908 6 N -0.272 5.272 7 C 0.052 3.948 8 C -0.552 4.552 9 H 0.060 0.940 10 C -0.186 4.186 11 N -0.587 5.587 12 Si 0.763 3.237 13 H -0.191 1.191 14 H -0.211 1.211 15 H -0.171 1.171 16 C -0.050 4.050 17 C -0.050 4.050 18 C -0.073 4.073 19 N -0.171 5.171 20 C 0.115 3.885 21 S -0.498 6.498 22 N -0.145 5.145 23 C 0.006 3.994 24 C -0.117 4.117 25 C -0.121 4.121 26 C -0.111 4.111 27 C -0.131 4.131 28 C -0.118 4.118 29 H 0.150 0.850 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.113 0.887 33 H 0.156 0.844 34 H 0.046 0.954 35 H 0.017 0.983 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.151 0.849 40 H 0.130 0.870 41 H 0.161 0.839 42 H 0.185 0.815 43 H 0.180 0.820 44 H 0.163 0.837 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -14.403 -12.927 18.545 26.804 hybrid contribution -0.902 1.262 -0.599 1.663 sum -15.304 -11.666 17.945 26.312 Atomic orbital electron populations 1.20861 0.78332 1.06834 1.07484 1.25915 0.98913 0.80137 0.94829 1.77284 0.87715 1.21866 1.25099 1.49553 1.05364 1.03474 1.57057 1.22468 0.83269 0.93119 0.91971 1.61322 1.03182 1.50302 1.12372 1.19946 0.92770 0.89456 0.92651 1.21198 1.18438 1.23678 0.91897 0.94020 1.25769 0.99692 0.98395 0.94715 1.70053 1.43284 1.41431 1.03895 0.85828 0.79397 0.79615 0.78837 1.19122 1.21063 1.17122 1.21765 0.85103 0.95007 1.03168 1.19307 0.79738 0.99187 1.06815 1.29420 0.94959 0.91769 0.91194 1.81178 1.14247 1.10538 1.11173 1.23665 0.90210 0.87612 0.87055 1.93161 1.24603 1.56343 1.75678 1.43600 1.03788 1.07584 1.59563 1.17578 1.03862 0.80215 0.97764 1.21286 0.97514 0.97384 0.95489 1.21438 0.99228 0.91759 0.99669 1.21740 0.95623 1.01452 0.92291 1.21313 0.97752 0.93494 1.00509 1.21146 0.98511 0.95471 0.96667 0.84953 0.87201 0.87492 0.88695 0.84406 0.95449 0.98310 0.92536 0.90829 0.91414 0.84919 0.86993 0.83866 0.81482 0.82030 0.83662 0.88186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.05 71.24 0.72 -0.14 16 2 C 0.28 6.45 7.91 137.64 1.09 7.54 16 3 N -0.30 -8.77 11.87 -49.50 -0.59 -9.36 16 4 N -0.36 -11.54 3.53 -359.54 -1.27 -12.81 16 5 C 0.30 8.86 5.73 170.81 0.98 9.83 16 6 N -0.55 -20.02 4.54 -913.15 -4.14 -24.16 16 7 C 0.18 7.89 3.67 85.56 0.31 8.21 16 8 C -0.51 -28.41 8.79 25.60 0.22 -28.19 16 9 H 0.04 2.60 7.56 -2.91 -0.02 2.58 16 10 C 0.01 0.68 5.47 84.65 0.46 1.14 16 11 N -0.95 -58.40 13.96 21.45 0.30 -58.10 16 12 Si 0.94 42.66 27.47 68.60 1.88 44.54 16 13 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 14 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 15 H -0.25 -10.46 6.54 99.48 0.65 -9.81 16 16 C 0.08 2.54 4.75 86.30 0.41 2.95 16 17 C -0.01 -0.28 5.75 28.79 0.17 -0.12 16 18 C 0.24 7.64 15.43 89.44 1.38 9.02 16 19 N -0.49 -17.90 18.54 20.00 0.37 -17.53 16 20 C 0.48 15.50 7.77 178.99 1.39 16.89 16 21 S -0.63 -22.95 29.77 -56.49 -1.68 -24.64 16 22 N -0.45 -11.77 2.77 -339.60 -0.94 -12.71 16 23 C 0.09 2.05 4.82 38.11 0.18 2.23 16 24 C -0.10 -1.36 9.77 22.39 0.22 -1.14 16 25 C -0.10 -0.95 10.04 22.25 0.22 -0.73 16 26 C -0.09 -0.94 10.04 22.29 0.22 -0.72 16 27 C -0.11 -1.78 10.04 22.25 0.22 -1.55 16 28 C -0.10 -2.26 9.60 22.39 0.21 -2.05 16 29 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.11 0.95 7.84 -2.39 -0.02 0.93 16 32 H 0.10 2.45 8.01 -2.39 -0.02 2.43 16 33 H 0.14 3.46 6.28 -2.39 -0.01 3.44 16 34 H 0.03 1.27 6.21 -2.39 -0.01 1.25 16 35 H 0.00 -0.03 7.55 -2.39 -0.02 -0.05 16 36 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 37 H 0.07 2.94 6.57 -2.39 -0.02 2.92 16 38 H 0.07 1.79 8.00 -2.39 -0.02 1.77 16 39 H 0.13 3.03 6.90 -2.38 -0.02 3.01 16 40 H 0.11 3.50 8.14 -2.39 -0.02 3.49 16 41 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 42 H 0.17 0.41 8.06 -2.91 -0.02 0.38 16 43 H 0.16 0.61 8.06 -2.91 -0.02 0.58 16 44 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 45 H 0.10 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -82.45 400.76 3.31 -79.14 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.96 Total: 12.45 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: 8.42 Total: 23.17 kcal Atomic # 7 Polarization: -128.39 SS G_CDS: -6.27 Total: -134.66 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.88 Total: 44.54 kcal Atomic # 16 Polarization: -22.95 SS G_CDS: -1.68 Total: -24.64 kcal Total: -82.45 3.31 -79.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021321069.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.710 kcal (2) G-P(sol) polarization free energy of solvation -82.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds