Wall clock time and date at job start Tue Mar 31 2020 05:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.46904 * 2 1 4 4 C 1.38041 * 119.55730 * 89.99992 * 3 2 1 5 5 N 1.32479 * 121.15403 * 0.02562 * 4 3 2 6 6 C 1.31642 * 121.72735 * 180.02562 * 5 4 3 7 7 C 1.40028 * 121.02644 * 0.02562 * 6 5 4 8 8 C 1.39795 * 119.56699 * 359.89549 * 7 6 5 9 9 C 1.39111 * 117.60890 * 359.97438 * 8 7 6 10 10 C 1.47210 * 121.84347 * 179.91729 * 9 8 7 11 11 O 1.21595 * 120.93876 * 359.97438 * 10 9 8 12 12 N 1.35148 * 118.12554 * 179.97438 * 10 9 8 13 13 C 1.37317 * 119.47931 * 179.97438 * 12 10 9 14 14 H 1.08001 * 120.00431 * 138.69519 * 13 12 10 15 15 C 1.38986 * 120.00328 * 318.69955 * 13 12 10 16 16 N 1.31335 * 119.99734 * 340.19509 * 15 13 12 17 17 Si 1.86801 * 120.00581 * 160.19480 * 15 13 12 18 18 H 1.48499 * 109.46800 * 60.00259 * 17 15 13 19 19 H 1.48497 * 109.47232 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46983 * 300.00196 * 17 15 13 21 21 C 1.34223 * 121.04479 * 0.02562 * 12 10 9 22 22 O 1.21541 * 118.49434 * 180.02562 * 21 12 10 23 23 C 1.50089 * 121.87940 * 180.25206 * 8 7 6 24 24 C 1.52700 * 111.22753 * 337.86476 * 23 8 7 25 25 C 1.52999 * 109.47823 * 294.12778 * 24 23 8 26 26 C 1.52995 * 109.48403 * 174.09402 * 24 23 8 27 27 C 1.53438 * 109.41604 * 54.10734 * 24 23 8 28 28 C 1.47187 * 120.42407 * 179.83322 * 7 6 5 29 29 O 1.21278 * 121.20579 * 348.53979 * 28 7 6 30 30 H 1.08999 * 109.47291 * 299.99702 * 1 2 3 31 31 H 1.08998 * 109.47497 * 60.00121 * 1 2 3 32 32 H 1.09003 * 109.46929 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46966 * 240.00244 * 2 1 3 34 34 H 1.08993 * 109.47406 * 120.00361 * 2 1 3 35 35 H 1.07998 * 119.48763 * 179.97438 * 6 5 4 36 36 H 0.97000 * 120.00047 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.12648 * 98.31024 * 23 8 7 38 38 H 1.08995 * 109.12693 * 217.40750 * 23 8 7 39 39 H 1.08995 * 109.47472 * 179.97438 * 25 24 23 40 40 H 1.09000 * 109.46994 * 299.94513 * 25 24 23 41 41 H 1.09002 * 109.47491 * 59.94447 * 25 24 23 42 42 H 1.09001 * 109.46826 * 300.05454 * 26 24 23 43 43 H 1.09002 * 109.46784 * 60.04907 * 26 24 23 44 44 H 1.08996 * 109.47435 * 180.02562 * 26 24 23 45 45 H 1.09005 * 109.85551 * 176.60583 * 27 24 23 46 46 H 1.08997 * 109.91925 * 55.61844 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2452 2.0232 1.2008 5 7 2.0297 1.4120 2.3562 6 6 2.2418 2.0136 3.5077 7 6 2.7067 3.3335 3.5576 8 6 2.9520 4.0239 2.3671 9 6 2.7178 3.3516 1.1720 10 6 2.9430 3.9900 -0.1353 11 8 3.3440 5.1354 -0.2109 12 7 2.6915 3.2670 -1.2491 13 6 2.8915 3.8352 -2.4831 14 1 3.3449 3.2589 -3.2760 15 6 2.5106 5.1521 -2.7118 16 7 1.6327 5.7282 -1.9229 17 14 3.2473 6.1029 -4.1411 18 1 2.9255 5.4101 -5.4145 19 1 2.6801 7.4750 -4.1676 20 1 4.7213 6.1790 -3.9776 21 6 2.2483 2.0026 -1.1682 22 8 2.0376 1.3949 -2.1995 23 6 3.4559 5.4377 2.3600 24 6 3.1394 6.1441 3.6763 25 6 1.6240 6.2976 3.8213 26 6 3.7955 7.5262 3.6844 27 6 3.6835 5.3124 4.8452 28 6 2.9359 3.9945 4.8526 29 8 2.5409 3.5021 5.8881 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 2.0536 1.4811 4.4283 36 1 1.3665 6.6472 -2.0827 37 1 4.5354 5.4313 2.2088 38 1 2.9848 5.9807 1.5408 39 1 1.3981 6.8014 4.7610 40 1 1.2376 6.8884 2.9907 41 1 1.1567 5.3128 3.8150 42 1 4.8750 7.4164 3.5806 43 1 3.4088 8.1167 2.8538 44 1 3.5698 8.0301 4.6241 45 1 3.5147 5.8391 5.7845 46 1 4.7498 5.1325 4.7083 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022610628.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:34 Heat of formation + Delta-G solvation = -47.932310 kcal Electronic energy + Delta-G solvation = -33952.584859 eV Core-core repulsion = 29614.911821 eV Total energy + Delta-G solvation = -4337.673037 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.152 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.75260 -40.40169 -38.55958 -38.22864 -37.23112 -35.57693 -34.31300 -33.01989 -32.26938 -31.16813 -29.86228 -28.43773 -27.44774 -27.27851 -25.93358 -24.15478 -23.51425 -23.12429 -21.24210 -20.87964 -19.90905 -18.36444 -18.17276 -17.52083 -16.79868 -16.13297 -15.89403 -15.56863 -15.33185 -15.11083 -14.78623 -14.75486 -14.25036 -14.16280 -14.06505 -13.78063 -13.59039 -13.38739 -13.29405 -13.12769 -12.91450 -12.46255 -12.30102 -12.16494 -11.87518 -11.84140 -11.80379 -11.65605 -11.14278 -11.12050 -11.06160 -10.86884 -10.81657 -10.77688 -10.51645 -10.22038 -10.19196 -9.75810 -9.40789 -9.33302 -9.27992 -8.74085 -8.15237 -7.92848 -6.59745 -4.38414 0.59719 1.04571 2.34658 2.61957 3.02696 3.16412 3.20552 3.24742 3.58511 3.87927 4.05133 4.26472 4.32734 4.44221 4.53172 4.58064 4.73438 4.77880 4.96240 5.06445 5.18143 5.24912 5.27921 5.37179 5.43783 5.46932 5.56365 5.65681 5.67002 5.69569 5.79018 5.81640 5.84652 5.88421 5.94600 6.05418 6.08699 6.18962 6.22348 6.30496 6.33081 6.42733 6.61415 6.72521 6.95619 7.32222 7.52467 7.76491 7.85755 8.10601 8.54052 8.77594 9.06622 9.48886 10.50242 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.009368 B = 0.005371 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.225132 B = 5212.214043 C = 7738.640117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 N -0.524 5.524 4 C 0.420 3.580 5 N -0.531 5.531 6 C 0.217 3.783 7 C -0.287 4.287 8 C 0.110 3.890 9 C -0.239 4.239 10 C 0.534 3.466 11 O -0.472 6.472 12 N -0.380 5.380 13 C -0.348 4.348 14 H 0.106 0.894 15 C 0.074 3.926 16 N -0.822 5.822 17 Si 0.935 3.065 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.268 1.268 21 C 0.663 3.337 22 O -0.547 6.547 23 C -0.093 4.093 24 C -0.058 4.058 25 C -0.149 4.149 26 C -0.138 4.138 27 C -0.155 4.155 28 C 0.421 3.579 29 O -0.467 6.467 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.171 0.829 36 H 0.276 0.724 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.093 0.907 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.222 -1.117 11.652 11.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.006 4.006 3 N -0.247 5.247 4 C 0.185 3.815 5 N -0.247 5.247 6 C 0.054 3.946 7 C -0.292 4.292 8 C 0.102 3.898 9 C -0.249 4.249 10 C 0.325 3.675 11 O -0.345 6.345 12 N -0.109 5.109 13 C -0.474 4.474 14 H 0.123 0.877 15 C -0.139 4.139 16 N -0.453 5.453 17 Si 0.759 3.241 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.193 1.193 21 C 0.369 3.631 22 O -0.422 6.422 23 C -0.129 4.129 24 C -0.058 4.058 25 C -0.207 4.207 26 C -0.195 4.195 27 C -0.193 4.193 28 C 0.300 3.700 29 O -0.343 6.343 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.188 0.812 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.145 0.855 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.112 0.888 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.676 -1.794 11.334 11.597 hybrid contribution 0.326 1.125 -0.598 1.315 sum 2.003 -0.669 10.736 10.941 Atomic orbital electron populations 1.22049 0.95026 1.02268 1.02695 1.21604 0.95272 0.79518 1.04185 1.45099 1.61436 1.15531 1.02675 1.18709 0.88363 0.87767 0.86627 1.67205 1.23260 1.37599 0.96623 1.22884 0.86603 0.90248 0.94833 1.20913 1.15119 0.97945 0.95241 1.19987 0.85225 0.95015 0.89536 1.20512 1.13175 0.94791 0.96431 1.17740 0.80600 0.86848 0.82290 1.90579 1.42894 1.15565 1.85462 1.41816 1.51298 1.09050 1.08769 1.19374 1.43124 0.96617 0.88237 0.87674 1.25366 0.93212 0.97266 0.98042 1.69854 1.24225 1.13907 1.37323 0.85898 0.79846 0.78153 0.80154 1.19577 1.20655 1.19252 1.16428 0.79928 0.84372 0.82370 1.90829 1.56166 1.64295 1.30910 1.20965 1.02734 0.90352 0.98838 1.20571 0.96300 0.95610 0.93294 1.21999 0.94211 1.02222 1.02220 1.21815 1.00556 0.94938 1.02200 1.22445 1.01413 0.94760 1.00662 1.22233 0.75257 0.85898 0.86626 1.90510 1.43225 1.65657 1.34918 0.92358 0.91968 0.91213 0.88811 0.88746 0.81188 0.91408 0.88604 0.85543 0.92397 0.91504 0.92692 0.92240 0.91686 0.92415 0.88844 0.88018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 10.24 37.16 0.38 -1.99 16 2 C 0.12 1.84 5.81 -4.04 -0.02 1.81 16 3 N -0.52 -10.41 2.63 -120.83 -0.32 -10.72 16 4 C 0.42 7.96 7.38 -155.16 -1.14 6.82 16 5 N -0.53 -8.69 9.17 -11.74 -0.11 -8.80 16 6 C 0.22 3.16 10.77 -16.96 -0.18 2.98 16 7 C -0.29 -4.26 5.07 -105.01 -0.53 -4.79 16 8 C 0.11 1.85 5.29 -104.01 -0.55 1.30 16 9 C -0.24 -4.80 5.88 -104.87 -0.62 -5.41 16 10 C 0.53 12.81 6.88 -12.45 -0.09 12.73 16 11 O -0.47 -11.80 11.27 5.28 0.06 -11.75 16 12 N -0.38 -9.78 2.63 -66.93 -0.18 -9.95 16 13 C -0.35 -9.45 8.54 -14.82 -0.13 -9.57 16 14 H 0.11 2.84 7.77 -52.49 -0.41 2.44 16 15 C 0.07 1.95 4.33 -17.49 -0.08 1.88 16 16 N -0.82 -22.27 11.56 55.50 0.64 -21.63 16 17 Si 0.93 20.40 29.60 -169.99 -5.03 15.37 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 C 0.66 15.89 8.05 -87.84 -0.71 15.18 16 22 O -0.55 -14.02 15.41 5.33 0.08 -13.93 16 23 C -0.09 -1.40 3.40 -28.33 -0.10 -1.50 16 24 C -0.06 -0.68 0.77 -154.44 -0.12 -0.80 16 25 C -0.15 -1.86 8.00 37.16 0.30 -1.57 16 26 C -0.14 -1.38 8.47 37.16 0.31 -1.06 16 27 C -0.16 -1.68 5.07 -27.25 -0.14 -1.82 16 28 C 0.42 5.67 5.70 -30.27 -0.17 5.50 16 29 O -0.47 -7.11 17.31 5.56 0.10 -7.02 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.49 7.30 -51.92 -0.38 1.11 16 34 H 0.09 1.31 7.38 -51.93 -0.38 0.92 16 35 H 0.17 2.06 7.73 -52.49 -0.41 1.65 16 36 H 0.28 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.13 2.32 5.91 -51.93 -0.31 2.01 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.77 6.06 -51.93 -0.31 0.45 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 370.56 15.07 5.58 5.58 Total: -1.00 -31.01 370.56 -8.73 -39.74 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -5.98 Total: 3.43 kcal Atomic # 6 Polarization: 23.26 SS G_CDS: -3.58 Total: 19.68 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.04 Total: -51.10 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: 0.24 Total: -32.70 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.01 -8.73 -39.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022610628.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.195 kcal (2) G-P(sol) polarization free energy of solvation -31.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds