Wall clock time and date at job start Tue Mar 31 2020 05:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.46904 * 2 1 4 4 C 1.38041 * 119.55730 * 89.99992 * 3 2 1 5 5 N 1.32479 * 121.15403 * 0.02562 * 4 3 2 6 6 C 1.31642 * 121.72735 * 180.02562 * 5 4 3 7 7 C 1.40028 * 121.02644 * 0.02562 * 6 5 4 8 8 C 1.39795 * 119.56699 * 359.89549 * 7 6 5 9 9 C 1.39111 * 117.60890 * 359.97438 * 8 7 6 10 10 C 1.47210 * 121.84347 * 179.91729 * 9 8 7 11 11 O 1.21595 * 120.93876 * 359.97438 * 10 9 8 12 12 N 1.35148 * 118.12554 * 179.97438 * 10 9 8 13 13 C 1.37317 * 119.47931 * 179.97438 * 12 10 9 14 14 H 1.08001 * 120.00431 * 138.69519 * 13 12 10 15 15 C 1.38986 * 120.00328 * 318.69955 * 13 12 10 16 16 N 1.31335 * 119.99734 * 340.19509 * 15 13 12 17 17 Si 1.86801 * 120.00581 * 160.19480 * 15 13 12 18 18 H 1.48499 * 109.46800 * 60.00259 * 17 15 13 19 19 H 1.48497 * 109.47232 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46983 * 300.00196 * 17 15 13 21 21 C 1.34223 * 121.04479 * 0.02562 * 12 10 9 22 22 O 1.21541 * 118.49434 * 180.02562 * 21 12 10 23 23 C 1.50089 * 121.87940 * 180.25206 * 8 7 6 24 24 C 1.52700 * 111.22753 * 337.86476 * 23 8 7 25 25 C 1.52999 * 109.47823 * 294.12778 * 24 23 8 26 26 C 1.52995 * 109.48403 * 174.09402 * 24 23 8 27 27 C 1.53438 * 109.41604 * 54.10734 * 24 23 8 28 28 C 1.47187 * 120.42407 * 179.83322 * 7 6 5 29 29 O 1.21278 * 121.20579 * 348.53979 * 28 7 6 30 30 H 1.08999 * 109.47291 * 299.99702 * 1 2 3 31 31 H 1.08998 * 109.47497 * 60.00121 * 1 2 3 32 32 H 1.09003 * 109.46929 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46966 * 240.00244 * 2 1 3 34 34 H 1.08993 * 109.47406 * 120.00361 * 2 1 3 35 35 H 1.07998 * 119.48763 * 179.97438 * 6 5 4 36 36 H 0.97000 * 120.00047 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.12648 * 98.31024 * 23 8 7 38 38 H 1.08995 * 109.12693 * 217.40750 * 23 8 7 39 39 H 1.08995 * 109.47472 * 179.97438 * 25 24 23 40 40 H 1.09000 * 109.46994 * 299.94513 * 25 24 23 41 41 H 1.09002 * 109.47491 * 59.94447 * 25 24 23 42 42 H 1.09001 * 109.46826 * 300.05454 * 26 24 23 43 43 H 1.09002 * 109.46784 * 60.04907 * 26 24 23 44 44 H 1.08996 * 109.47435 * 180.02562 * 26 24 23 45 45 H 1.09005 * 109.85551 * 176.60583 * 27 24 23 46 46 H 1.08997 * 109.91925 * 55.61844 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2452 2.0232 1.2008 5 7 2.0297 1.4120 2.3562 6 6 2.2418 2.0136 3.5077 7 6 2.7067 3.3335 3.5576 8 6 2.9520 4.0239 2.3671 9 6 2.7178 3.3516 1.1720 10 6 2.9430 3.9900 -0.1353 11 8 3.3440 5.1354 -0.2109 12 7 2.6915 3.2670 -1.2491 13 6 2.8915 3.8352 -2.4831 14 1 3.3449 3.2589 -3.2760 15 6 2.5106 5.1521 -2.7118 16 7 1.6327 5.7282 -1.9229 17 14 3.2473 6.1029 -4.1411 18 1 2.9255 5.4101 -5.4145 19 1 2.6801 7.4750 -4.1676 20 1 4.7213 6.1790 -3.9776 21 6 2.2483 2.0026 -1.1682 22 8 2.0376 1.3949 -2.1995 23 6 3.4559 5.4377 2.3600 24 6 3.1394 6.1441 3.6763 25 6 1.6240 6.2976 3.8213 26 6 3.7955 7.5262 3.6844 27 6 3.6835 5.3124 4.8452 28 6 2.9359 3.9945 4.8526 29 8 2.5409 3.5021 5.8881 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 2.0536 1.4811 4.4283 36 1 1.3665 6.6472 -2.0827 37 1 4.5354 5.4313 2.2088 38 1 2.9848 5.9807 1.5408 39 1 1.3981 6.8014 4.7610 40 1 1.2376 6.8884 2.9907 41 1 1.1567 5.3128 3.8150 42 1 4.8750 7.4164 3.5806 43 1 3.4088 8.1167 2.8538 44 1 3.5698 8.0301 4.6241 45 1 3.5147 5.8391 5.7845 46 1 4.7498 5.1325 4.7083 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000022610628.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:33 Heat of formation + Delta-G solvation = -64.772283 kcal Electronic energy + Delta-G solvation = -33953.315095 eV Core-core repulsion = 29614.911821 eV Total energy + Delta-G solvation = -4338.403273 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.152 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.32868 -41.76529 -40.02778 -39.85319 -38.40643 -37.15438 -36.17015 -34.64638 -33.77728 -32.67612 -31.17811 -29.55390 -28.76070 -28.23709 -27.60733 -25.66247 -25.13213 -24.53255 -22.61221 -22.28900 -21.28976 -20.06369 -19.62288 -18.86582 -18.36018 -17.70910 -17.22169 -17.14090 -16.88298 -16.59124 -16.19758 -15.94998 -15.85274 -15.53906 -15.45566 -15.16032 -15.05233 -14.81250 -14.58595 -14.46177 -14.29426 -13.75875 -13.66630 -13.49202 -13.14563 -13.11021 -12.98371 -12.88764 -12.77644 -12.71950 -12.28352 -12.14009 -12.11426 -12.01637 -11.79599 -11.66248 -11.60274 -11.33973 -11.26657 -10.78446 -10.59901 -10.38653 -10.02725 -9.48394 -8.56882 -6.45103 -0.73968 -0.36171 1.04528 1.10784 1.25188 1.38671 1.44601 1.51910 2.09629 2.21089 2.49858 2.72480 2.88943 2.99478 3.07826 3.17649 3.44225 3.58231 3.69808 3.79994 3.99033 4.02351 4.05204 4.17606 4.22235 4.30537 4.39049 4.49375 4.53343 4.64247 4.68429 4.79542 4.80888 4.84966 4.92491 4.95165 5.00944 5.06955 5.17125 5.19813 5.23377 5.26813 5.32149 5.38690 5.44472 5.45843 5.81853 6.17815 6.42548 6.48511 6.62104 6.88086 7.17408 7.59124 8.54082 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.009368 B = 0.005371 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.225132 B = 5212.214043 C = 7738.640117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.110 3.890 3 N -0.524 5.524 4 C 0.414 3.586 5 N -0.521 5.521 6 C 0.227 3.773 7 C -0.279 4.279 8 C 0.116 3.884 9 C -0.269 4.269 10 C 0.529 3.471 11 O -0.493 6.493 12 N -0.402 5.402 13 C -0.384 4.384 14 H 0.092 0.908 15 C 0.036 3.964 16 N -0.856 5.856 17 Si 0.997 3.003 18 H -0.263 1.263 19 H -0.271 1.271 20 H -0.265 1.265 21 C 0.661 3.339 22 O -0.577 6.577 23 C -0.090 4.090 24 C -0.050 4.050 25 C -0.149 4.149 26 C -0.135 4.135 27 C -0.147 4.147 28 C 0.428 3.572 29 O -0.477 6.477 30 H 0.055 0.945 31 H 0.031 0.969 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.206 0.794 36 H 0.277 0.723 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.050 0.950 41 H 0.036 0.964 42 H 0.070 0.930 43 H 0.049 0.951 44 H 0.082 0.918 45 H 0.119 0.881 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.882 -1.084 15.069 15.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 N -0.247 5.247 4 C 0.181 3.819 5 N -0.237 5.237 6 C 0.065 3.935 7 C -0.284 4.284 8 C 0.108 3.892 9 C -0.279 4.279 10 C 0.322 3.678 11 O -0.367 6.367 12 N -0.132 5.132 13 C -0.509 4.509 14 H 0.109 0.891 15 C -0.174 4.174 16 N -0.488 5.488 17 Si 0.818 3.182 18 H -0.187 1.187 19 H -0.196 1.196 20 H -0.189 1.189 21 C 0.366 3.634 22 O -0.455 6.455 23 C -0.126 4.126 24 C -0.050 4.050 25 C -0.206 4.206 26 C -0.192 4.192 27 C -0.184 4.184 28 C 0.307 3.693 29 O -0.354 6.354 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.126 0.874 33 H 0.108 0.892 34 H 0.139 0.861 35 H 0.223 0.777 36 H 0.087 0.913 37 H 0.121 0.879 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.100 0.900 45 H 0.138 0.862 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.328 -1.783 14.804 15.092 hybrid contribution 0.097 1.027 -1.446 1.776 sum 2.424 -0.756 13.358 13.597 Atomic orbital electron populations 1.21999 0.93934 1.04195 1.01005 1.21936 0.96150 0.77584 1.05273 1.45045 1.61189 1.16602 1.01875 1.18765 0.88571 0.87445 0.87155 1.67321 1.23122 1.37149 0.96111 1.23541 0.84476 0.90308 0.95177 1.21204 1.13648 0.97999 0.95518 1.20215 0.84236 0.95655 0.89047 1.20455 1.16052 0.95800 0.95590 1.18303 0.79643 0.86629 0.83254 1.90545 1.43753 1.16334 1.86104 1.42035 1.52238 1.09904 1.09049 1.19450 1.44821 0.97556 0.89059 0.89059 1.26248 0.93032 0.97584 1.00522 1.69930 1.25481 1.14135 1.39206 0.84981 0.79013 0.77051 0.77167 1.18739 1.19553 1.18925 1.16491 0.79613 0.83920 0.83345 1.90778 1.57498 1.64889 1.32294 1.20933 1.02582 0.89290 0.99831 1.20526 0.96070 0.96600 0.91780 1.22009 0.94599 1.01146 1.02893 1.21800 1.01004 0.93440 1.02927 1.22484 1.02167 0.92743 1.01005 1.22418 0.74971 0.86582 0.85315 1.90525 1.43703 1.66243 1.34909 0.92588 0.94948 0.87441 0.89180 0.86051 0.77723 0.91335 0.87916 0.89213 0.89915 0.93121 0.94479 0.91058 0.93188 0.89960 0.86233 0.85677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.38 10.24 71.98 0.74 -3.65 16 2 C 0.11 3.47 5.81 86.38 0.50 3.97 16 3 N -0.52 -21.30 2.63 -654.75 -1.72 -23.02 16 4 C 0.41 15.72 7.38 133.83 0.99 16.71 16 5 N -0.52 -16.05 9.17 -191.06 -1.75 -17.80 16 6 C 0.23 5.92 10.77 85.16 0.92 6.84 16 7 C -0.28 -7.60 5.07 -20.12 -0.10 -7.70 16 8 C 0.12 3.84 5.29 -19.47 -0.10 3.73 16 9 C -0.27 -11.06 5.88 -20.03 -0.12 -11.18 16 10 C 0.53 26.76 6.88 86.54 0.60 27.36 16 11 O -0.49 -26.07 11.27 -4.02 -0.05 -26.11 16 12 N -0.40 -21.96 2.63 -602.30 -1.58 -23.54 16 13 C -0.38 -22.10 8.54 84.01 0.72 -21.38 16 14 H 0.09 5.31 7.77 -2.91 -0.02 5.28 16 15 C 0.04 1.96 4.33 84.95 0.37 2.33 16 16 N -0.86 -48.68 11.56 21.66 0.25 -48.43 16 17 Si 1.00 43.29 29.60 68.60 2.03 45.32 16 18 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 19 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 20 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 21 C 0.66 33.39 8.05 179.38 1.44 34.84 16 22 O -0.58 -31.31 15.41 -3.84 -0.06 -31.37 16 23 C -0.09 -2.69 3.40 29.56 0.10 -2.59 16 24 C -0.05 -1.05 0.77 -52.14 -0.04 -1.09 16 25 C -0.15 -3.48 8.00 71.98 0.58 -2.90 16 26 C -0.13 -2.32 8.47 71.98 0.61 -1.71 16 27 C -0.15 -2.53 5.07 30.26 0.15 -2.38 16 28 C 0.43 9.91 5.70 28.30 0.16 10.07 16 29 O -0.48 -12.50 17.31 -3.02 -0.05 -12.55 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.09 2.89 7.30 -2.38 -0.02 2.88 16 34 H 0.12 3.13 7.38 -2.39 -0.02 3.11 16 35 H 0.21 4.01 7.73 -2.91 -0.02 3.99 16 36 H 0.28 14.78 8.31 -92.71 -0.77 14.01 16 37 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 38 H 0.09 3.45 5.91 -2.39 -0.01 3.44 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.04 0.98 6.06 -2.39 -0.01 0.96 16 42 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.12 1.59 8.14 -2.38 -0.02 1.57 16 46 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -72.54 370.56 5.60 -66.94 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 1.03 Total: 19.30 kcal Atomic # 6 Polarization: 43.76 SS G_CDS: 7.51 Total: 51.27 kcal Atomic # 7 Polarization: -107.99 SS G_CDS: -4.81 Total: -112.80 kcal Atomic # 8 Polarization: -69.88 SS G_CDS: -0.16 Total: -70.03 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -72.54 5.60 -66.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022610628.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.172 kcal (2) G-P(sol) polarization free energy of solvation -72.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds