Wall clock time and date at job start Tue Mar 31 2020 04:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42892 * 109.47163 * 2 1 4 4 C 1.35993 * 117.00002 * 180.02562 * 3 2 1 5 5 C 1.38569 * 120.07349 * 0.27181 * 4 3 2 6 6 C 1.38240 * 119.99830 * 180.28160 * 5 4 3 7 7 C 1.38255 * 120.15098 * 359.71574 * 6 5 4 8 8 C 1.38240 * 120.14372 * 0.02562 * 7 6 5 9 9 C 1.38566 * 119.99821 * 359.97438 * 8 7 6 10 10 O 1.35997 * 120.07277 * 180.02562 * 9 8 7 11 11 C 1.42905 * 116.99916 * 0.02562 * 10 9 8 12 12 C 1.50697 * 109.47102 * 179.97438 * 11 10 9 13 13 O 1.21299 * 120.00001 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00075 * 179.97438 * 12 11 10 15 15 C 1.39992 * 120.00244 * 184.24458 * 14 12 11 16 16 C 1.38918 * 120.00007 * 324.64395 * 15 14 12 17 17 C 1.38004 * 119.99893 * 179.78797 * 16 15 14 18 18 C 1.38904 * 120.00197 * 0.48863 * 17 16 15 19 19 O 1.35776 * 120.00356 * 179.71998 * 18 17 16 20 20 C 1.34818 * 117.00192 * 185.35948 * 19 18 17 21 21 H 1.07996 * 120.00202 * 354.97078 * 20 19 18 22 22 C 1.38628 * 119.99682 * 174.96319 * 20 19 18 23 23 N 1.31572 * 120.00466 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00107 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46906 * 89.99808 * 24 22 20 26 26 H 1.48492 * 109.47427 * 210.00536 * 24 22 20 27 27 H 1.48508 * 109.46775 * 330.00537 * 24 22 20 28 28 C 1.38918 * 120.00116 * 359.74117 * 18 17 16 29 29 C 1.38002 * 119.99900 * 0.02562 * 28 18 17 30 30 H 1.09000 * 109.47236 * 300.00706 * 1 2 3 31 31 H 1.09002 * 109.47089 * 60.00162 * 1 2 3 32 32 H 1.08998 * 109.47493 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46747 * 239.99220 * 2 1 3 34 34 H 1.09000 * 109.46577 * 119.99870 * 2 1 3 35 35 H 1.07998 * 119.99703 * 359.97438 * 5 4 3 36 36 H 1.08007 * 119.92622 * 179.74780 * 6 5 4 37 37 H 1.07993 * 119.92593 * 180.02562 * 7 6 5 38 38 H 1.08001 * 120.00163 * 180.02562 * 8 7 6 39 39 H 1.08997 * 109.47156 * 59.99822 * 11 10 9 40 40 H 1.08999 * 109.46845 * 299.99707 * 11 10 9 41 41 H 0.97000 * 119.99783 * 4.51811 * 14 12 11 42 42 H 1.08001 * 120.00355 * 0.02562 * 16 15 14 43 43 H 1.07999 * 120.00394 * 180.20399 * 17 16 15 44 44 H 0.96994 * 120.00574 * 179.97438 * 23 22 20 45 45 H 1.08003 * 119.99654 * 180.02562 * 28 18 17 46 46 H 1.07999 * 119.99638 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3545 1.5254 -0.0005 5 6 4.2000 0.4276 -0.0068 6 6 5.5703 0.6104 -0.0014 7 6 6.1004 1.8873 0.0042 8 6 5.2626 2.9868 0.0050 9 6 3.8882 2.8105 -0.0003 10 8 3.0625 3.8912 0.0000 11 6 3.6804 5.1797 0.0053 12 6 2.6165 6.2470 0.0042 13 8 1.4443 5.9349 -0.0012 14 7 2.9673 7.5482 0.0092 15 6 1.9818 8.5386 0.0978 16 6 0.7521 8.3522 -0.5209 17 6 -0.2209 9.3266 -0.4298 18 6 0.0329 10.4981 0.2720 19 8 -0.9223 11.4593 0.3569 20 6 -0.5752 12.6160 0.9560 21 1 0.3977 12.7163 1.4140 22 6 -1.4672 13.6769 0.9841 23 7 -2.6526 13.5547 0.4265 24 14 -0.9861 15.2800 1.8137 25 1 -0.3373 16.1751 0.8222 26 1 -2.2003 15.9402 2.3568 27 1 -0.0380 14.9989 2.9216 28 6 1.2644 10.6867 0.8867 29 6 2.2357 9.7102 0.7997 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 3.7885 -0.5709 -0.0107 36 1 6.2282 -0.2461 -0.0021 37 1 7.1714 2.0259 0.0079 38 1 5.6792 3.9832 0.0090 39 1 4.3036 5.2875 -0.8824 40 1 4.2979 5.2828 0.8976 41 1 3.9024 7.7987 -0.0527 42 1 0.5561 7.4430 -1.0700 43 1 -1.1781 9.1803 -0.9080 44 1 -3.2768 14.2968 0.4465 45 1 1.4615 11.5974 1.4327 46 1 3.1932 9.8570 1.2773 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023150963.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:43 Heat of formation + Delta-G solvation = -71.456833 kcal Electronic energy + Delta-G solvation = -29678.904239 eV Core-core repulsion = 25307.918350 eV Total energy + Delta-G solvation = -4370.985888 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.94671 -40.13274 -38.96060 -38.39583 -37.17701 -36.37452 -34.03767 -32.26600 -32.18520 -30.71956 -30.22673 -30.15187 -28.89062 -27.14628 -25.32441 -24.37588 -22.65446 -22.42656 -22.11564 -21.32045 -20.23584 -19.10171 -18.06725 -17.83920 -17.48591 -17.07235 -16.73024 -16.26338 -16.18962 -16.10527 -15.19800 -15.03129 -14.69078 -14.57002 -14.51292 -14.17493 -13.68897 -13.59659 -13.47795 -13.32597 -12.94234 -12.85495 -12.78003 -12.54609 -12.32662 -12.25773 -11.86335 -11.67729 -11.57767 -11.54652 -11.34752 -11.32336 -11.05478 -11.04549 -10.73969 -10.46858 -9.76140 -9.58110 -9.26725 -9.11768 -8.73011 -8.21466 -8.12640 -6.96173 -6.44704 -4.02967 0.91517 1.10087 2.03548 2.19691 2.41287 2.76502 2.89803 3.13098 3.13592 3.18342 3.38023 3.55145 3.96557 4.37397 4.44049 4.54681 4.57455 4.61371 4.69196 4.70156 4.76119 4.78647 4.89713 5.00277 5.04447 5.09775 5.21773 5.32109 5.38232 5.52302 5.53811 5.76910 5.77478 5.84609 5.90405 6.11019 6.12348 6.19491 6.24631 6.31182 6.73596 6.80488 6.82830 6.96862 7.14202 7.21109 7.29186 7.40225 7.63533 7.76647 7.99511 8.27706 9.00376 9.70670 10.73141 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.020073 B = 0.001638 C = 0.001535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.605219 B =17086.585922 C =18241.991963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.300 6.300 4 C 0.107 3.893 5 C -0.175 4.175 6 C -0.118 4.118 7 C -0.118 4.118 8 C -0.176 4.176 9 C 0.101 3.899 10 O -0.276 6.276 11 C 0.043 3.957 12 C 0.506 3.494 13 O -0.499 6.499 14 N -0.656 5.656 15 C 0.033 3.967 16 C -0.066 4.066 17 C -0.179 4.179 18 C 0.149 3.851 19 O -0.175 6.175 20 C -0.392 4.392 21 H 0.092 0.908 22 C 0.039 3.961 23 N -0.861 5.861 24 Si 0.942 3.058 25 H -0.273 1.273 26 H -0.278 1.278 27 H -0.268 1.268 28 C -0.221 4.221 29 C -0.087 4.087 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.134 0.866 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.136 0.864 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.402 0.598 42 H 0.129 0.871 43 H 0.122 0.878 44 H 0.270 0.730 45 H 0.132 0.868 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.723 -24.919 -1.037 31.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.214 6.214 4 C 0.061 3.939 5 C -0.194 4.194 6 C -0.137 4.137 7 C -0.137 4.137 8 C -0.194 4.194 9 C 0.055 3.945 10 O -0.188 6.188 11 C -0.036 4.036 12 C 0.291 3.709 13 O -0.372 6.372 14 N -0.303 5.303 15 C -0.059 4.059 16 C -0.086 4.086 17 C -0.199 4.199 18 C 0.094 3.906 19 O -0.079 6.079 20 C -0.468 4.468 21 H 0.110 0.890 22 C -0.166 4.166 23 N -0.496 5.496 24 Si 0.766 3.234 25 H -0.199 1.199 26 H -0.203 1.203 27 H -0.192 1.192 28 C -0.241 4.241 29 C -0.107 4.107 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.152 0.848 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.153 0.847 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.237 0.763 42 H 0.147 0.853 43 H 0.140 0.860 44 H 0.080 0.920 45 H 0.150 0.850 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 17.025 -24.881 -1.127 30.169 hybrid contribution 1.209 0.800 0.471 1.524 sum 18.233 -24.081 -0.656 30.212 Atomic orbital electron populations 1.21772 0.92499 1.02676 1.04086 1.22803 0.96277 0.82025 1.01001 1.86271 1.17764 1.28816 1.88524 1.18250 0.83480 0.91002 1.01188 1.21084 0.94099 0.97395 1.06827 1.20859 0.94195 0.97390 1.01238 1.20851 0.99692 0.91876 1.01239 1.21111 0.91037 1.00560 1.06724 1.18331 0.89059 0.85326 1.01749 1.86291 1.32467 1.11366 1.88697 1.22458 0.95186 0.82348 1.03647 1.19991 0.89905 0.83029 0.77982 1.90777 1.18697 1.81393 1.46316 1.42967 1.09714 1.04212 1.73406 1.17194 0.91238 0.90624 1.06876 1.20756 0.92027 0.98199 0.97613 1.20158 1.00645 0.93533 1.05517 1.19432 0.88335 0.89942 0.92848 1.83993 1.33428 1.22002 1.68441 1.21318 1.02524 0.88057 1.34930 0.89043 1.25296 0.95066 0.98925 0.97278 1.70044 1.06060 1.32314 1.41150 0.85706 0.78276 0.80296 0.79101 1.19890 1.20266 1.19214 1.20974 0.94336 1.01349 1.07400 1.20466 0.98938 0.93299 0.98014 0.91266 0.91272 0.90440 0.92190 0.92190 0.84815 0.85604 0.85504 0.84665 0.89048 0.88966 0.76310 0.85312 0.86043 0.91990 0.85040 0.87081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.76 16 2 C 0.05 0.44 5.46 37.16 0.20 0.64 16 3 O -0.30 -3.77 9.92 -34.22 -0.34 -4.11 16 4 C 0.11 1.23 6.70 -39.12 -0.26 0.96 16 5 C -0.18 -1.48 9.04 -39.46 -0.36 -1.84 16 6 C -0.12 -0.85 10.04 -39.57 -0.40 -1.25 16 7 C -0.12 -0.85 10.04 -39.57 -0.40 -1.25 16 8 C -0.18 -1.48 9.04 -39.46 -0.36 -1.84 16 9 C 0.10 1.18 6.70 -39.12 -0.26 0.92 16 10 O -0.28 -3.82 9.46 -47.36 -0.45 -4.27 16 11 C 0.04 0.43 5.22 36.00 0.19 0.62 16 12 C 0.51 7.32 7.75 -10.99 -0.09 7.24 16 13 O -0.50 -9.78 13.96 -14.37 -0.20 -9.98 16 14 N -0.66 -8.67 5.34 -9.82 -0.05 -8.72 16 15 C 0.03 0.58 6.30 -83.63 -0.53 0.05 16 16 C -0.07 -1.33 8.69 -39.42 -0.34 -1.67 16 17 C -0.18 -3.99 9.98 -39.42 -0.39 -4.39 16 18 C 0.15 3.63 6.65 -39.08 -0.26 3.37 16 19 O -0.18 -5.04 9.76 0.00 0.00 -5.04 16 20 C -0.39 -10.91 9.48 30.88 0.29 -10.62 16 21 H 0.09 2.33 5.20 -52.49 -0.27 2.05 16 22 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 23 N -0.86 -25.31 13.67 55.48 0.76 -24.55 16 24 Si 0.94 20.40 29.55 -169.99 -5.02 15.38 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 28 C -0.22 -4.72 9.16 -39.42 -0.36 -5.08 16 29 C -0.09 -1.54 9.96 -39.42 -0.39 -1.93 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 34 H 0.06 0.39 7.68 -51.93 -0.40 -0.01 16 35 H 0.13 0.82 6.30 -52.49 -0.33 0.49 16 36 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 37 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 38 H 0.14 0.79 6.30 -52.49 -0.33 0.46 16 39 H 0.09 0.64 7.66 -51.93 -0.40 0.24 16 40 H 0.09 0.67 7.66 -51.93 -0.40 0.27 16 41 H 0.40 3.51 8.82 -40.82 -0.36 3.15 16 42 H 0.13 2.57 6.25 -52.49 -0.33 2.24 16 43 H 0.12 2.64 8.06 -52.49 -0.42 2.22 16 44 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.13 2.77 5.63 -52.48 -0.30 2.47 16 46 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 393.06 15.07 5.92 5.92 Total: -1.00 -36.57 393.06 -8.41 -44.98 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.60 Total: 6.23 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -3.42 Total: -15.84 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.71 Total: -33.27 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.99 Total: -23.40 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.57 -8.41 -44.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023150963.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.479 kcal (2) G-P(sol) polarization free energy of solvation -36.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds