Wall clock time and date at job start Tue Mar 31 2020 04:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42892 * 109.47163 * 2 1 4 4 C 1.35993 * 117.00002 * 180.02562 * 3 2 1 5 5 C 1.38569 * 120.07349 * 0.27181 * 4 3 2 6 6 C 1.38240 * 119.99830 * 180.28160 * 5 4 3 7 7 C 1.38255 * 120.15098 * 359.71574 * 6 5 4 8 8 C 1.38240 * 120.14372 * 0.02562 * 7 6 5 9 9 C 1.38566 * 119.99821 * 359.97438 * 8 7 6 10 10 O 1.35997 * 120.07277 * 180.02562 * 9 8 7 11 11 C 1.42905 * 116.99916 * 0.02562 * 10 9 8 12 12 C 1.50697 * 109.47102 * 179.97438 * 11 10 9 13 13 O 1.21299 * 120.00001 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00075 * 179.97438 * 12 11 10 15 15 C 1.39992 * 120.00244 * 184.24458 * 14 12 11 16 16 C 1.38918 * 120.00007 * 324.64395 * 15 14 12 17 17 C 1.38004 * 119.99893 * 179.78797 * 16 15 14 18 18 C 1.38904 * 120.00197 * 0.48863 * 17 16 15 19 19 O 1.35776 * 120.00356 * 179.71998 * 18 17 16 20 20 C 1.34818 * 117.00192 * 185.35948 * 19 18 17 21 21 H 1.07996 * 120.00202 * 354.97078 * 20 19 18 22 22 C 1.38628 * 119.99682 * 174.96319 * 20 19 18 23 23 N 1.31572 * 120.00466 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00107 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46906 * 89.99808 * 24 22 20 26 26 H 1.48492 * 109.47427 * 210.00536 * 24 22 20 27 27 H 1.48508 * 109.46775 * 330.00537 * 24 22 20 28 28 C 1.38918 * 120.00116 * 359.74117 * 18 17 16 29 29 C 1.38002 * 119.99900 * 0.02562 * 28 18 17 30 30 H 1.09000 * 109.47236 * 300.00706 * 1 2 3 31 31 H 1.09002 * 109.47089 * 60.00162 * 1 2 3 32 32 H 1.08998 * 109.47493 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46747 * 239.99220 * 2 1 3 34 34 H 1.09000 * 109.46577 * 119.99870 * 2 1 3 35 35 H 1.07998 * 119.99703 * 359.97438 * 5 4 3 36 36 H 1.08007 * 119.92622 * 179.74780 * 6 5 4 37 37 H 1.07993 * 119.92593 * 180.02562 * 7 6 5 38 38 H 1.08001 * 120.00163 * 180.02562 * 8 7 6 39 39 H 1.08997 * 109.47156 * 59.99822 * 11 10 9 40 40 H 1.08999 * 109.46845 * 299.99707 * 11 10 9 41 41 H 0.97000 * 119.99783 * 4.51811 * 14 12 11 42 42 H 1.08001 * 120.00355 * 0.02562 * 16 15 14 43 43 H 1.07999 * 120.00394 * 180.20399 * 17 16 15 44 44 H 0.96994 * 120.00574 * 179.97438 * 23 22 20 45 45 H 1.08003 * 119.99654 * 180.02562 * 28 18 17 46 46 H 1.07999 * 119.99638 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3545 1.5254 -0.0005 5 6 4.2000 0.4276 -0.0068 6 6 5.5703 0.6104 -0.0014 7 6 6.1004 1.8873 0.0042 8 6 5.2626 2.9868 0.0050 9 6 3.8882 2.8105 -0.0003 10 8 3.0625 3.8912 0.0000 11 6 3.6804 5.1797 0.0053 12 6 2.6165 6.2470 0.0042 13 8 1.4443 5.9349 -0.0012 14 7 2.9673 7.5482 0.0092 15 6 1.9818 8.5386 0.0978 16 6 0.7521 8.3522 -0.5209 17 6 -0.2209 9.3266 -0.4298 18 6 0.0329 10.4981 0.2720 19 8 -0.9223 11.4593 0.3569 20 6 -0.5752 12.6160 0.9560 21 1 0.3977 12.7163 1.4140 22 6 -1.4672 13.6769 0.9841 23 7 -2.6526 13.5547 0.4265 24 14 -0.9861 15.2800 1.8137 25 1 -0.3373 16.1751 0.8222 26 1 -2.2003 15.9402 2.3568 27 1 -0.0380 14.9989 2.9216 28 6 1.2644 10.6867 0.8867 29 6 2.2357 9.7102 0.7997 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 3.7885 -0.5709 -0.0107 36 1 6.2282 -0.2461 -0.0021 37 1 7.1714 2.0259 0.0079 38 1 5.6792 3.9832 0.0090 39 1 4.3036 5.2875 -0.8824 40 1 4.2979 5.2828 0.8976 41 1 3.9024 7.7987 -0.0527 42 1 0.5561 7.4430 -1.0700 43 1 -1.1781 9.1803 -0.9080 44 1 -3.2768 14.2968 0.4465 45 1 1.4615 11.5974 1.4327 46 1 3.1932 9.8570 1.2773 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023150963.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:42 Heat of formation + Delta-G solvation = -95.583693 kcal Electronic energy + Delta-G solvation = -29679.950458 eV Core-core repulsion = 25307.918350 eV Total energy + Delta-G solvation = -4372.032108 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.80152 -41.30565 -40.41956 -39.45640 -38.19353 -37.68571 -35.48982 -34.17685 -32.85938 -31.89497 -31.38640 -31.01554 -29.90591 -28.42345 -27.23182 -25.04057 -23.99930 -23.41586 -23.19956 -22.41531 -21.51366 -19.98202 -19.72113 -19.06847 -18.66946 -18.34626 -17.55796 -17.52456 -17.05220 -16.94120 -16.37204 -16.17310 -15.77937 -15.73510 -15.65637 -15.45654 -15.36950 -15.06897 -14.57253 -14.29355 -14.27436 -14.07665 -13.65522 -13.60263 -13.39914 -13.29312 -13.24211 -12.98380 -12.80180 -12.71330 -12.48016 -12.26908 -12.11306 -12.06017 -11.90807 -11.66150 -11.34381 -11.16354 -10.85129 -10.57637 -9.86607 -9.71272 -8.82084 -8.65558 -8.45291 -6.13218 0.32437 0.46916 0.48428 0.51627 1.37262 1.42876 1.46474 1.55297 1.58832 2.19325 2.29118 2.62230 2.78278 2.81504 3.14865 3.49804 3.52176 3.86376 3.95315 4.02684 4.02986 4.05179 4.11433 4.12464 4.13138 4.21118 4.31976 4.43616 4.47781 4.51429 4.59111 4.68821 4.73324 4.85575 4.89345 5.05666 5.16570 5.17614 5.25147 5.27040 5.36496 5.44138 5.53071 5.56154 5.65850 5.77866 6.02274 6.06345 6.14984 6.46413 6.64592 6.98500 7.15589 7.79006 8.77966 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.020073 B = 0.001638 C = 0.001535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.605219 B =17086.585922 C =18241.991963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.048 3.952 3 O -0.339 6.339 4 C 0.072 3.928 5 C -0.177 4.177 6 C -0.117 4.117 7 C -0.117 4.117 8 C -0.172 4.172 9 C 0.068 3.932 10 O -0.319 6.319 11 C 0.048 3.952 12 C 0.504 3.496 13 O -0.558 6.558 14 N -0.639 5.639 15 C 0.060 3.940 16 C -0.075 4.075 17 C -0.193 4.193 18 C 0.110 3.890 19 O -0.232 6.232 20 C -0.413 4.413 21 H 0.109 0.891 22 C -0.026 4.026 23 N -0.923 5.923 24 Si 1.022 2.978 25 H -0.262 1.262 26 H -0.275 1.275 27 H -0.249 1.249 28 C -0.221 4.221 29 C -0.073 4.073 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.164 0.836 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.431 0.569 42 H 0.128 0.872 43 H 0.109 0.891 44 H 0.272 0.728 45 H 0.135 0.865 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.385 -26.325 -0.035 35.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.026 4.026 3 O -0.255 6.255 4 C 0.027 3.973 5 C -0.196 4.196 6 C -0.135 4.135 7 C -0.135 4.135 8 C -0.190 4.190 9 C 0.023 3.977 10 O -0.233 6.233 11 C -0.030 4.030 12 C 0.292 3.708 13 O -0.435 6.435 14 N -0.288 5.288 15 C -0.033 4.033 16 C -0.095 4.095 17 C -0.213 4.213 18 C 0.059 3.941 19 O -0.138 6.138 20 C -0.489 4.489 21 H 0.126 0.874 22 C -0.224 4.224 23 N -0.561 5.561 24 Si 0.841 3.159 25 H -0.187 1.187 26 H -0.200 1.200 27 H -0.172 1.172 28 C -0.240 4.240 29 C -0.092 4.092 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.169 0.831 36 H 0.172 0.828 37 H 0.176 0.824 38 H 0.182 0.818 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.271 0.729 42 H 0.145 0.855 43 H 0.127 0.873 44 H 0.081 0.919 45 H 0.153 0.847 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 22.797 -26.343 -0.133 34.838 hybrid contribution -0.310 0.827 0.089 0.887 sum 22.487 -25.516 -0.045 34.011 Atomic orbital electron populations 1.21816 0.92543 1.04062 1.02561 1.23020 0.96323 0.80923 1.02383 1.86215 1.19037 1.31058 1.89142 1.18733 0.83416 0.92211 1.02963 1.21365 0.94638 0.97419 1.06179 1.21301 0.93903 0.98738 0.99602 1.21303 1.01178 0.91414 0.99650 1.21472 0.89643 1.02502 1.05403 1.18720 0.90248 0.84728 1.03966 1.86212 1.34642 1.12812 1.89613 1.22598 0.93353 0.79827 1.07178 1.20908 0.90173 0.83857 0.75879 1.90771 1.21617 1.82302 1.48768 1.42834 1.10242 1.03120 1.72604 1.17323 0.90978 0.91263 1.03763 1.20840 0.92951 0.97452 0.98258 1.20249 1.01115 0.94003 1.05955 1.19875 0.89559 0.89926 0.94763 1.83964 1.35697 1.23284 1.70874 1.21901 1.03466 0.88358 1.35166 0.87405 1.26670 0.94799 1.02957 0.97928 1.70210 1.07851 1.33852 1.44180 0.84537 0.78263 0.74707 0.78380 1.18719 1.19992 1.17229 1.21164 0.93789 1.02450 1.06635 1.20867 1.00015 0.91608 0.96735 0.92796 0.92729 0.87571 0.90669 0.90724 0.83134 0.82761 0.82387 0.81839 0.85150 0.85240 0.72898 0.85471 0.87291 0.91906 0.84708 0.81711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 10.28 71.98 0.74 -1.62 16 2 C 0.05 0.78 5.46 71.98 0.39 1.17 16 3 O -0.34 -8.90 9.92 -79.61 -0.79 -9.69 16 4 C 0.07 1.63 6.70 22.57 0.15 1.78 16 5 C -0.18 -2.68 9.04 22.35 0.20 -2.48 16 6 C -0.12 -1.27 10.04 22.27 0.22 -1.05 16 7 C -0.12 -1.19 10.04 22.27 0.22 -0.96 16 8 C -0.17 -2.28 9.04 22.35 0.20 -2.08 16 9 C 0.07 1.50 6.70 22.57 0.15 1.65 16 10 O -0.32 -8.58 9.46 -67.11 -0.63 -9.21 16 11 C 0.05 0.82 5.22 71.23 0.37 1.19 16 12 C 0.50 13.49 7.75 87.66 0.68 14.17 16 13 O -0.56 -22.01 13.96 15.95 0.22 -21.79 16 14 N -0.64 -14.48 5.34 -303.38 -1.62 -16.10 16 15 C 0.06 1.99 6.30 38.16 0.24 2.23 16 16 C -0.07 -3.06 8.69 22.38 0.19 -2.86 16 17 C -0.19 -9.15 9.98 22.37 0.22 -8.93 16 18 C 0.11 5.61 6.65 22.59 0.15 5.76 16 19 O -0.23 -14.20 9.76 -22.91 -0.22 -14.42 16 20 C -0.41 -23.94 9.48 67.91 0.64 -23.30 16 21 H 0.11 5.58 5.20 -2.91 -0.02 5.56 16 22 C -0.03 -1.50 5.49 84.82 0.47 -1.04 16 23 N -0.92 -57.39 13.67 21.61 0.30 -57.09 16 24 Si 1.02 42.53 29.55 68.60 2.03 44.56 16 25 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 28 C -0.22 -9.30 9.16 22.38 0.20 -9.09 16 29 C -0.07 -2.33 9.96 22.38 0.22 -2.11 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 0.93 7.65 -2.39 -0.02 0.92 16 34 H 0.07 0.94 7.68 -2.39 -0.02 0.92 16 35 H 0.15 1.56 6.30 -2.91 -0.02 1.54 16 36 H 0.15 0.74 8.06 -2.91 -0.02 0.72 16 37 H 0.16 0.59 8.06 -2.91 -0.02 0.57 16 38 H 0.16 1.03 6.30 -2.91 -0.02 1.02 16 39 H 0.13 1.19 7.66 -2.39 -0.02 1.17 16 40 H 0.13 1.23 7.66 -2.39 -0.02 1.21 16 41 H 0.43 5.07 8.82 -92.71 -0.82 4.25 16 42 H 0.13 5.25 6.25 -2.91 -0.02 5.23 16 43 H 0.11 5.24 8.06 -2.91 -0.02 5.21 16 44 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 45 H 0.14 5.54 5.63 -2.91 -0.02 5.53 16 46 H 0.17 3.60 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -90.30 393.06 5.18 -85.12 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.22 Total: 26.19 kcal Atomic # 6 Polarization: -33.23 SS G_CDS: 5.68 Total: -27.55 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -1.32 Total: -73.20 kcal Atomic # 8 Polarization: -53.69 SS G_CDS: -1.43 Total: -55.12 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -90.30 5.18 -85.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023150963.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.467 kcal (2) G-P(sol) polarization free energy of solvation -90.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds