Wall clock time and date at job start Tue Mar 31 2020 05:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30842 * 125.89798 * 2 1 4 4 N 1.40084 * 108.20663 * 180.25438 * 3 2 1 5 5 C 1.46495 * 126.04013 * 179.73793 * 4 3 2 6 6 C 1.50699 * 109.47131 * 269.98016 * 5 4 3 7 7 H 1.08002 * 119.99767 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00208 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99755 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00053 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47367 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47238 * 119.99996 * 10 8 6 13 13 H 1.48507 * 109.47262 * 239.99788 * 10 8 6 14 14 C 1.34950 * 107.92381 * 359.71898 * 4 3 2 15 15 C 1.50694 * 126.12576 * 179.97438 * 14 4 3 16 16 C 1.35319 * 107.74352 * 359.97438 * 14 4 3 17 17 C 1.50706 * 126.03437 * 180.02562 * 16 14 4 18 18 C 1.53000 * 109.47116 * 90.00130 * 17 16 14 19 19 C 1.50696 * 109.47110 * 179.97438 * 18 17 16 20 20 O 1.21281 * 120.00042 * 0.02562 * 19 18 17 21 21 N 1.34784 * 119.99865 * 179.97438 * 19 18 17 22 22 O 1.41595 * 119.99861 * 180.02562 * 21 19 18 23 23 C 1.42903 * 114.00007 * 180.02562 * 22 21 19 24 24 C 1.50701 * 109.46985 * 180.02562 * 23 22 21 25 25 C 1.38234 * 119.99624 * 269.72143 * 24 23 22 26 26 C 1.38237 * 119.99724 * 179.76801 * 25 24 23 27 27 C 1.38237 * 120.00188 * 0.50916 * 26 25 24 28 28 C 1.38231 * 119.99630 * 359.74519 * 27 26 25 29 29 C 1.38232 * 120.00065 * 89.99819 * 24 23 22 30 30 H 1.08998 * 109.47393 * 270.21132 * 1 2 3 31 31 H 1.09001 * 109.46747 * 30.21871 * 1 2 3 32 32 H 1.08998 * 109.46776 * 150.21632 * 1 2 3 33 33 H 1.09001 * 109.47188 * 29.97306 * 5 4 3 34 34 H 1.08997 * 109.47530 * 149.97532 * 5 4 3 35 35 H 0.96999 * 120.00262 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.47170 * 270.02464 * 15 14 4 37 37 H 1.09004 * 109.47112 * 30.02444 * 15 14 4 38 38 H 1.09003 * 109.46820 * 150.02019 * 15 14 4 39 39 H 1.09000 * 109.46646 * 209.99544 * 17 16 14 40 40 H 1.09000 * 109.47248 * 330.00261 * 17 16 14 41 41 H 1.09000 * 109.47214 * 300.00167 * 18 17 16 42 42 H 1.09008 * 109.47142 * 59.99333 * 18 17 16 43 43 H 0.96998 * 119.99578 * 0.02562 * 21 19 18 44 44 H 1.09002 * 109.46799 * 299.99749 * 23 22 21 45 45 H 1.08992 * 109.46921 * 59.99761 * 23 22 21 46 46 H 1.07998 * 120.00186 * 0.02562 * 25 24 23 47 47 H 1.08001 * 119.99822 * 180.23562 * 26 25 24 48 48 H 1.07999 * 120.00219 * 179.72324 * 27 26 25 49 49 H 1.08001 * 119.99993 * 179.97438 * 28 27 26 50 50 H 1.07998 * 120.00459 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0059 5 6 4.7899 1.5008 -0.0133 6 6 5.1881 1.7951 -1.4366 7 1 4.6186 1.3779 -2.2540 8 6 6.2795 2.5970 -1.6955 9 7 6.9727 3.1054 -0.7002 10 14 6.7735 2.9611 -3.4598 11 1 5.8388 2.2745 -4.3873 12 1 6.7196 4.4261 -3.6966 13 1 8.1552 2.4717 -3.6981 14 6 3.6143 -0.7153 -0.0031 15 6 4.8351 -1.5988 -0.0081 16 6 2.3272 -1.1329 0.0048 17 6 1.8600 -2.5657 0.0109 18 6 1.7097 -3.0470 1.4555 19 6 1.2420 -4.4795 1.4616 20 8 1.0484 -5.0587 0.4137 21 7 1.0398 -5.1174 2.6316 22 8 0.6008 -6.4636 2.6373 23 6 0.4276 -7.0129 3.9451 24 6 -0.0382 -8.4417 3.8321 25 6 -1.3902 -8.7267 3.7910 26 6 -1.8174 -10.0369 3.6826 27 6 -0.8927 -11.0629 3.6259 28 6 0.4592 -10.7783 3.6723 29 6 0.8865 -9.4676 3.7754 30 1 -0.3634 0.0038 1.0276 31 1 -0.3633 0.8880 -0.5172 32 1 -0.3633 -0.8919 -0.5105 33 1 4.5588 2.4344 0.4996 34 1 5.6118 0.9994 0.4977 35 1 7.7407 3.6692 -0.8822 36 1 5.1240 -1.8136 -1.0369 37 1 5.6539 -1.0899 0.5006 38 1 4.6103 -2.5319 0.5087 39 1 0.8985 -2.6365 -0.4975 40 1 2.5908 -3.1883 -0.5052 41 1 2.6712 -2.9761 1.9640 42 1 0.9790 -2.4243 1.9718 43 1 1.1950 -4.6543 3.4696 44 1 1.3763 -6.9817 4.4809 45 1 -0.3159 -6.4299 4.4884 46 1 -2.1127 -7.9254 3.8394 47 1 -2.8736 -10.2593 3.6466 48 1 -1.2265 -12.0869 3.5456 49 1 1.1816 -11.5799 3.6284 50 1 1.9427 -9.2454 3.8125 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025039685.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:37 Heat of formation + Delta-G solvation = 49.604888 kcal Electronic energy + Delta-G solvation = -29830.214815 eV Core-core repulsion = 25632.604403 eV Total energy + Delta-G solvation = -4197.610413 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.63838 -39.89348 -39.41326 -37.36335 -34.40858 -33.46853 -33.16971 -32.49612 -31.50626 -31.36598 -30.05176 -28.96811 -26.91876 -26.25259 -25.88121 -23.83949 -23.05901 -22.25860 -21.92484 -20.58513 -18.84530 -18.67620 -18.43301 -17.43695 -16.92041 -16.69734 -16.34037 -15.70860 -15.60648 -15.36553 -14.85095 -14.55672 -14.45865 -14.21155 -13.88432 -13.85482 -13.54972 -13.41002 -13.08149 -12.93678 -12.77123 -12.63041 -12.50115 -12.33392 -12.18038 -11.80367 -11.70531 -11.65127 -11.59951 -11.35359 -11.29960 -11.25896 -10.96167 -10.82838 -10.74991 -10.27035 -10.00687 -9.72060 -9.62670 -9.37356 -9.33813 -9.10678 -8.66105 -8.19511 -7.50262 -6.27623 -4.34747 0.69614 0.95204 1.75414 2.57871 2.75502 3.19545 3.27615 3.29939 3.33386 3.36480 3.60079 4.16545 4.29099 4.29452 4.38884 4.56093 4.56643 4.67508 4.71488 4.85314 5.04492 5.06174 5.13502 5.16643 5.18581 5.31667 5.37596 5.47507 5.57026 5.63463 5.67156 5.80316 5.93430 5.94499 5.97399 6.00815 6.04549 6.05115 6.07758 6.23031 6.36344 6.41468 6.50408 6.52594 6.57564 6.83475 7.01666 7.09122 7.10601 7.49914 7.65685 7.87243 8.04032 8.15942 8.65619 8.74698 9.31933 10.80046 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.021623 B = 0.001497 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.635322 B =18696.384951 C =19290.991509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.051 3.949 3 N -0.297 5.297 4 N -0.324 5.324 5 C 0.256 3.744 6 C -0.535 4.535 7 H 0.065 0.935 8 C 0.066 3.934 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.281 1.281 14 C 0.095 3.905 15 C -0.087 4.087 16 C -0.271 4.271 17 C -0.011 4.011 18 C -0.120 4.120 19 C 0.524 3.476 20 O -0.519 6.519 21 N -0.605 5.605 22 O -0.142 6.142 23 C 0.074 3.926 24 C -0.092 4.092 25 C -0.094 4.094 26 C -0.124 4.124 27 C -0.110 4.110 28 C -0.123 4.123 29 C -0.094 4.094 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.267 0.733 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.406 0.594 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.125 0.875 47 H 0.125 0.875 48 H 0.124 0.876 49 H 0.126 0.874 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.635 -24.072 14.093 31.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.113 4.113 3 N -0.120 5.120 4 N -0.104 5.104 5 C 0.139 3.861 6 C -0.574 4.574 7 H 0.083 0.917 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.195 1.195 12 H -0.206 1.206 13 H -0.206 1.206 14 C -0.036 4.036 15 C -0.145 4.145 16 C -0.283 4.283 17 C -0.050 4.050 18 C -0.160 4.160 19 C 0.312 3.688 20 O -0.392 6.392 21 N -0.309 5.309 22 O -0.146 6.146 23 C -0.003 4.003 24 C -0.093 4.093 25 C -0.112 4.112 26 C -0.142 4.142 27 C -0.128 4.128 28 C -0.141 4.141 29 C -0.112 4.112 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.246 0.754 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.143 0.857 47 H 0.143 0.857 48 H 0.142 0.858 49 H 0.144 0.856 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.471 -23.064 13.181 29.785 hybrid contribution 0.504 -0.376 -0.148 0.646 sum -12.967 -23.440 13.033 29.790 Atomic orbital electron populations 1.20037 0.88011 1.02511 1.01834 1.21954 0.96135 0.90745 1.02465 1.77285 0.87482 1.22646 1.24630 1.49250 1.05796 1.04198 1.51121 1.19664 0.77976 0.89551 0.98954 1.21352 1.13019 1.31630 0.91355 0.91719 1.24924 0.95695 0.94993 0.98154 1.69924 1.18957 1.33009 1.31112 0.86307 0.78397 0.78295 0.83744 1.19545 1.20626 1.20645 1.20789 0.96118 0.85701 1.01032 1.20363 0.93744 0.97136 1.03273 1.19299 0.91371 0.94904 1.22695 1.19414 1.02002 0.91037 0.92532 1.21745 1.03284 0.88913 1.02078 1.21340 0.76926 0.88548 0.82003 1.90734 1.49968 1.67403 1.31057 1.47879 1.71008 1.02250 1.09776 1.90690 1.88131 1.10860 1.24907 1.21753 1.00994 0.91529 0.85981 1.19349 0.93841 0.92888 1.03231 1.21109 0.94921 0.97078 0.98138 1.21180 0.99927 0.92640 1.00412 1.21265 0.93323 0.99440 0.98788 1.21184 0.96065 0.96509 1.00384 1.21116 0.99530 0.92513 0.98054 0.91577 0.91550 0.91162 0.93055 0.93072 0.92317 0.90377 0.90909 0.91036 0.90960 0.91095 0.88510 0.88434 0.75429 0.91185 0.91197 0.85686 0.85654 0.85793 0.85640 0.85662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.26 36.01 0.37 -0.53 16 2 C 0.05 0.95 7.22 -82.40 -0.59 0.36 16 3 N -0.30 -6.70 12.58 33.67 0.42 -6.28 16 4 N -0.32 -7.44 3.60 -58.32 -0.21 -7.65 16 5 C 0.26 6.50 6.00 -5.20 -0.03 6.47 16 6 C -0.54 -14.72 9.39 -34.44 -0.32 -15.05 16 7 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 8 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -24.99 13.29 55.43 0.74 -24.25 16 10 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 C 0.10 1.84 6.93 -82.26 -0.57 1.27 16 15 C -0.09 -1.39 9.72 36.00 0.35 -1.04 16 16 C -0.27 -4.69 5.35 -105.05 -0.56 -5.25 16 17 C -0.01 -0.15 4.41 -27.88 -0.12 -0.27 16 18 C -0.12 -1.28 5.68 -27.89 -0.16 -1.43 16 19 C 0.52 6.48 7.97 -10.98 -0.09 6.39 16 20 O -0.52 -8.86 16.39 -12.63 -0.21 -9.07 16 21 N -0.61 -5.86 6.39 31.22 0.20 -5.66 16 22 O -0.14 -1.61 11.09 -29.66 -0.33 -1.94 16 23 C 0.07 0.54 6.35 36.01 0.23 0.77 16 24 C -0.09 -0.74 5.51 -104.62 -0.58 -1.31 16 25 C -0.09 -0.70 9.70 -39.58 -0.38 -1.09 16 26 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16 27 C -0.11 -0.70 10.05 -39.58 -0.40 -1.10 16 28 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 29 C -0.09 -0.71 9.70 -39.58 -0.38 -1.09 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.85 7.25 -51.93 -0.38 0.48 16 33 H 0.05 1.40 8.14 -51.93 -0.42 0.97 16 34 H 0.05 1.28 7.05 -51.93 -0.37 0.91 16 35 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.07 1.19 7.08 -51.93 -0.37 0.82 16 38 H 0.07 0.91 7.77 -51.93 -0.40 0.50 16 39 H 0.07 1.02 7.20 -51.93 -0.37 0.65 16 40 H 0.07 1.03 7.73 -51.93 -0.40 0.63 16 41 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 43 H 0.41 2.29 8.54 -40.82 -0.35 1.94 16 44 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 45 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 46 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 47 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 48 H 0.12 0.52 8.06 -52.49 -0.42 0.10 16 49 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 50 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 LS Contribution 428.05 15.07 6.45 6.45 Total: -1.00 -35.51 428.05 -9.77 -45.28 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.67 Total: 0.64 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -4.14 Total: -13.67 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 1.15 Total: -43.83 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.54 Total: -11.01 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.45 Total: 6.45 kcal Total: -35.51 -9.77 -45.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025039685.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.887 kcal (2) G-P(sol) polarization free energy of solvation -35.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds