Wall clock time and date at job start Tue Mar 31 2020 05:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35894 * 116.99660 * 2 1 4 4 C 1.38734 * 120.05303 * 179.97438 * 3 2 1 5 5 C 1.38153 * 119.94377 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.05200 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94362 * 180.02562 * 6 5 4 8 8 N 1.46899 * 109.47478 * 89.99383 * 7 6 5 9 9 C 1.40089 * 110.99685 * 66.04837 * 8 7 6 10 10 C 1.54514 * 111.50893 * 188.14843 * 9 8 7 11 11 C 1.50738 * 108.94417 * 283.99489 * 10 9 8 12 12 N 1.48062 * 112.94137 * 92.65059 * 11 10 9 13 13 C 1.46899 * 111.00384 * 84.35027 * 12 11 10 14 14 C 1.52993 * 109.47287 * 164.18942 * 13 12 11 15 15 H 1.09002 * 109.47229 * 55.64652 * 14 13 12 16 16 C 1.47204 * 109.47360 * 295.64380 * 14 13 12 17 17 N 9.65486 * 134.89520 * 133.76201 * 5 1 2 18 18 C 1.53008 * 109.47003 * 175.64464 * 14 13 12 19 19 C 1.50699 * 109.46793 * 184.99849 * 18 14 13 20 20 H 1.08001 * 120.00584 * 0.02562 * 19 18 14 21 21 C 1.37885 * 119.99566 * 180.02562 * 19 18 14 22 22 N 1.31513 * 119.99776 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99544 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47350 * 89.99948 * 23 21 19 25 25 H 1.48508 * 109.46909 * 209.99823 * 23 21 19 26 26 H 1.48497 * 109.47256 * 329.99681 * 23 21 19 27 27 C 1.47753 * 113.78670 * 318.28306 * 12 11 10 28 28 C 1.47679 * 111.00081 * 194.69122 * 8 7 6 29 29 C 1.38268 * 120.11865 * 0.26617 * 6 5 4 30 30 C 1.38145 * 120.04724 * 359.46051 * 29 6 5 31 31 H 1.09003 * 109.47003 * 59.99915 * 1 2 3 32 32 H 1.09005 * 109.47023 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47338 * 299.99606 * 1 2 3 34 34 H 1.07995 * 120.02977 * 359.96460 * 4 3 2 35 35 H 1.07996 * 119.97055 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.47212 * 210.00052 * 7 6 5 37 37 H 1.09008 * 109.46339 * 329.99591 * 7 6 5 38 38 H 1.08997 * 109.07413 * 308.67191 * 9 8 7 39 39 H 1.08995 * 109.06872 * 67.62624 * 9 8 7 40 40 H 1.09006 * 109.55951 * 43.83191 * 10 9 8 41 41 H 1.08994 * 109.55485 * 164.04307 * 10 9 8 42 42 H 1.09004 * 108.78739 * 213.54398 * 11 10 9 43 43 H 1.09001 * 108.78936 * 331.87133 * 11 10 9 44 44 H 1.09006 * 109.46786 * 284.18940 * 13 12 11 45 45 H 1.08993 * 109.47016 * 44.18425 * 13 12 11 46 46 H 1.08994 * 109.47077 * 305.00041 * 18 14 13 47 47 H 1.09003 * 109.46614 * 65.00453 * 18 14 13 48 48 H 0.97000 * 119.99179 * 180.02562 * 22 21 19 49 49 H 1.08996 * 108.99105 * 79.50040 * 27 12 11 50 50 H 1.09006 * 108.99076 * 198.33011 * 27 12 11 51 51 H 1.09003 * 109.73927 * 271.63952 * 28 8 7 52 52 H 1.08998 * 109.74012 * 32.34226 * 28 8 7 53 53 H 1.07995 * 119.97670 * 179.70607 * 29 6 5 54 54 H 1.08010 * 120.02748 * 180.27309 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5170 0.0000 6 6 3.3018 3.6758 -0.0005 7 6 3.9859 5.0186 -0.0017 8 7 4.2079 5.4540 -1.3870 9 6 2.9914 5.6991 -2.0372 10 6 3.1980 5.9604 -3.5460 11 6 3.7409 7.3544 -3.7314 12 7 5.2203 7.3967 -3.7744 13 6 5.7160 7.1111 -5.1274 14 6 7.1803 7.5413 -5.2354 15 1 7.7621 7.0488 -4.4562 16 6 7.2763 9.0010 -5.0711 17 7 7.3519 10.1298 -4.9396 18 6 7.7282 7.1454 -6.6081 19 6 9.2012 7.4577 -6.6700 20 1 9.6971 7.8943 -5.8157 21 6 9.9158 7.1858 -7.8175 22 7 9.3120 6.6537 -8.8576 23 14 11.7418 7.5722 -7.8939 24 1 12.5170 6.3938 -7.4294 25 1 12.1214 7.8941 -9.2931 26 1 12.0386 8.7357 -7.0203 27 6 5.8707 6.5223 -2.7767 28 6 5.1702 6.5728 -1.4425 29 6 1.9210 3.6048 0.0050 30 6 1.2915 2.3751 -0.0001 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8899 34 1 4.0208 0.3800 0.0015 35 1 5.1345 2.5751 0.0008 36 1 3.3580 5.7467 0.5118 37 1 4.9440 4.9386 0.5120 38 1 2.3397 4.8345 -1.9114 39 1 2.5161 6.5704 -1.5866 40 1 3.9068 5.2364 -3.9480 41 1 2.2451 5.8659 -4.0664 42 1 3.3507 7.7619 -4.6641 43 1 3.3973 7.9776 -2.9058 44 1 5.6357 6.0423 -5.3257 45 1 5.1209 7.6615 -5.8561 46 1 7.5761 6.0778 -6.7659 47 1 7.2052 7.7056 -7.3833 48 1 9.8149 6.4622 -9.6646 49 1 5.8605 5.4962 -3.1440 50 1 6.9046 6.8417 -2.6455 51 1 4.6401 7.5198 -1.3406 52 1 5.9002 6.4706 -0.6394 53 1 1.3341 4.5114 0.0094 54 1 0.2128 2.3201 -0.0003 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025306509.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:32 Heat of formation + Delta-G solvation = 7.888399 kcal Electronic energy + Delta-G solvation = -31490.964076 eV Core-core repulsion = 27427.377795 eV Total energy + Delta-G solvation = -4063.586281 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 357.216 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.29031 -40.59689 -38.94211 -38.03892 -36.56867 -35.43400 -33.86495 -32.96099 -32.14193 -31.87507 -29.67696 -28.47298 -27.75185 -26.79844 -25.28986 -24.46334 -23.54343 -23.44567 -22.22208 -21.42931 -20.68773 -19.05971 -18.52638 -18.22470 -17.43064 -17.15725 -16.93492 -16.60396 -16.55614 -16.30662 -15.95731 -15.78354 -15.46420 -15.21370 -14.77080 -14.57953 -14.43050 -14.31370 -14.21850 -14.03346 -13.84266 -13.69141 -13.49001 -13.28986 -13.10075 -12.98567 -12.96309 -12.75460 -12.63861 -12.54210 -12.45068 -12.38950 -12.13775 -11.96097 -11.91510 -11.80524 -11.67679 -11.59085 -11.43901 -11.24701 -11.03866 -10.53646 -9.88841 -9.19587 -9.07218 -8.93731 -8.18109 -6.26212 0.43889 0.45655 1.41051 1.42759 1.52227 2.07808 2.15404 2.41935 2.42524 2.68883 2.95804 3.17177 3.24642 3.37360 3.82046 3.86054 3.95677 3.99783 4.08124 4.13039 4.23197 4.30674 4.39193 4.39513 4.41018 4.47342 4.49643 4.50608 4.56125 4.66075 4.67130 4.74888 4.75894 4.77267 4.81278 4.86007 4.91097 4.98739 5.04380 5.08200 5.13529 5.17262 5.23555 5.34724 5.41850 5.42199 5.48016 5.63223 5.73134 5.80547 5.86959 6.11908 6.16426 6.24875 6.29420 6.48327 6.55959 6.84823 6.95898 7.42104 8.92820 Molecular weight = 357.22amu Principal moments of inertia in cm(-1) A = 0.013776 B = 0.001897 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.987471 B =14754.214001 C =15640.506930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.110 3.890 4 C -0.169 4.169 5 C -0.064 4.064 6 C -0.120 4.120 7 C 0.107 3.893 8 N -0.557 5.557 9 C 0.076 3.924 10 C -0.142 4.142 11 C 0.060 3.940 12 N -0.559 5.559 13 C 0.079 3.921 14 C 0.023 3.977 15 H 0.114 0.886 16 C 0.269 3.731 17 N -0.516 5.516 18 C 0.038 3.962 19 C -0.537 4.537 20 H 0.054 0.946 21 C 0.010 3.990 22 N -0.923 5.923 23 Si 0.950 3.050 24 H -0.266 1.266 25 H -0.285 1.285 26 H -0.276 1.276 27 C 0.059 3.941 28 C 0.070 3.930 29 C -0.077 4.077 30 C -0.212 4.212 31 H 0.062 0.938 32 H 0.116 0.884 33 H 0.065 0.935 34 H 0.131 0.869 35 H 0.139 0.861 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.022 0.978 40 H 0.061 0.939 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.032 0.968 47 H 0.000 1.000 48 H 0.264 0.736 49 H 0.049 0.951 50 H 0.073 0.927 51 H 0.046 0.954 52 H 0.095 0.905 53 H 0.135 0.865 54 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.891 -12.438 21.942 32.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.065 3.935 4 C -0.188 4.188 5 C -0.082 4.082 6 C -0.121 4.121 7 C -0.020 4.020 8 N -0.281 5.281 9 C -0.054 4.054 10 C -0.181 4.181 11 C -0.067 4.067 12 N -0.284 5.284 13 C -0.051 4.051 14 C 0.001 3.999 15 H 0.132 0.868 16 C -0.047 4.047 17 N -0.193 5.193 18 C 0.000 4.000 19 C -0.575 4.575 20 H 0.072 0.928 21 C -0.189 4.189 22 N -0.563 5.563 23 Si 0.775 3.225 24 H -0.191 1.191 25 H -0.210 1.210 26 H -0.201 1.201 27 C -0.068 4.068 28 C -0.056 4.056 29 C -0.095 4.095 30 C -0.231 4.231 31 H 0.080 0.920 32 H 0.134 0.866 33 H 0.083 0.917 34 H 0.149 0.851 35 H 0.157 0.843 36 H 0.066 0.934 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.040 0.960 40 H 0.080 0.920 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.051 0.949 47 H 0.019 0.981 48 H 0.073 0.927 49 H 0.067 0.933 50 H 0.091 0.909 51 H 0.064 0.936 52 H 0.114 0.886 53 H 0.153 0.847 54 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -20.354 -10.861 21.856 31.780 hybrid contribution 0.244 -0.278 -0.529 0.646 sum -20.110 -11.139 21.327 31.358 Atomic orbital electron populations 1.23304 0.76635 1.05408 1.02133 1.86044 1.23345 1.27219 1.88788 1.19267 0.92727 0.84667 0.96852 1.20639 0.91766 0.99233 1.07119 1.21008 1.00598 0.90678 0.95927 1.19793 0.93527 0.95221 1.03567 1.20963 1.00560 0.92082 0.88346 1.58985 1.14574 1.38738 1.15818 1.21054 0.90821 0.99849 0.93635 1.21995 1.02047 0.97640 0.96459 1.21950 0.86029 0.96400 1.02298 1.62155 1.06516 1.55268 1.04503 1.22021 0.92548 1.00120 0.90377 1.19156 0.98076 0.81211 1.01408 0.86837 1.29424 0.90006 0.95281 0.90006 1.81095 1.11861 1.14201 1.12187 1.18984 0.94381 0.97012 0.89661 1.21538 0.95455 1.41107 0.99408 0.92801 1.25732 1.02541 0.95091 0.95530 1.70039 1.37670 1.44298 1.04332 0.85677 0.80848 0.78777 0.77171 1.19139 1.21030 1.20062 1.21935 0.97943 0.95330 0.91595 1.21839 0.95000 0.91577 0.97217 1.21040 0.94070 0.97450 0.96970 1.21398 1.00863 0.91970 1.08847 0.91984 0.86591 0.91666 0.85056 0.84327 0.93396 0.88965 0.90566 0.95957 0.92039 0.89872 0.91437 0.91231 0.92012 0.90839 0.94943 0.98110 0.92747 0.93251 0.90919 0.93602 0.88632 0.84684 0.83877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -5.88 10.50 -92.36 -0.97 -6.85 16 3 C 0.11 1.97 6.69 22.51 0.15 2.12 16 4 C -0.17 -3.04 9.99 22.37 0.22 -2.82 16 5 C -0.06 -1.05 9.69 22.26 0.22 -0.83 16 6 C -0.12 -1.86 4.85 -19.85 -0.10 -1.95 16 7 C 0.11 1.48 5.12 85.56 0.44 1.92 16 8 N -0.56 -9.42 3.98 -916.85 -3.65 -13.07 16 9 C 0.08 1.26 4.75 88.05 0.42 1.67 16 10 C -0.14 -2.63 5.64 30.37 0.17 -2.46 16 11 C 0.06 1.28 5.15 85.34 0.44 1.72 16 12 N -0.56 -14.33 4.40 -899.58 -3.95 -18.28 16 13 C 0.08 2.32 4.23 86.30 0.37 2.68 16 14 C 0.02 0.86 2.16 -12.60 -0.03 0.83 16 15 H 0.11 3.89 6.71 -2.39 -0.02 3.87 16 16 C 0.27 11.28 13.66 89.41 1.22 12.50 16 17 N -0.52 -23.59 18.56 20.04 0.37 -23.22 16 18 C 0.04 1.80 4.42 29.85 0.13 1.94 16 19 C -0.54 -28.79 8.60 25.60 0.22 -28.57 16 20 H 0.05 2.86 7.59 -2.91 -0.02 2.84 16 21 C 0.01 0.55 5.46 84.66 0.46 1.01 16 22 N -0.92 -53.53 13.29 21.45 0.28 -53.24 16 23 Si 0.95 43.85 29.54 68.60 2.03 45.87 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 26 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 27 C 0.06 1.35 4.57 85.42 0.39 1.74 16 28 C 0.07 1.27 5.37 85.43 0.46 1.73 16 29 C -0.08 -1.09 7.87 22.25 0.18 -0.92 16 30 C -0.21 -3.12 9.04 22.37 0.20 -2.91 16 31 H 0.06 0.46 7.66 -2.39 -0.02 0.44 16 32 H 0.12 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.06 0.42 7.66 -2.39 -0.02 0.41 16 34 H 0.13 2.17 8.06 -2.91 -0.02 2.14 16 35 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 36 H 0.05 0.60 8.05 -2.39 -0.02 0.58 16 37 H 0.09 1.13 7.62 -2.38 -0.02 1.11 16 38 H 0.08 1.25 5.41 -2.39 -0.01 1.24 16 39 H 0.02 0.36 7.60 -2.39 -0.02 0.34 16 40 H 0.06 1.36 6.92 -2.38 -0.02 1.34 16 41 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.45 7.56 -2.38 -0.02 1.43 16 43 H 0.07 1.44 6.52 -2.39 -0.02 1.42 16 44 H 0.06 1.73 7.75 -2.38 -0.02 1.71 16 45 H 0.07 2.21 7.65 -2.39 -0.02 2.20 16 46 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 48 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 49 H 0.05 1.19 6.93 -2.39 -0.02 1.18 16 50 H 0.07 1.74 7.04 -2.38 -0.02 1.72 16 51 H 0.05 0.90 6.77 -2.39 -0.02 0.88 16 52 H 0.10 1.44 7.55 -2.39 -0.02 1.43 16 53 H 0.14 1.47 7.93 -2.91 -0.02 1.44 16 54 H 0.14 1.46 6.30 -2.91 -0.02 1.44 16 Total: -1.00 -66.78 422.88 1.67 -65.11 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.89 Total: 12.98 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 6.67 Total: -9.30 kcal Atomic # 7 Polarization: -100.87 SS G_CDS: -6.95 Total: -107.82 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.97 Total: -6.85 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -66.78 1.67 -65.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025306509.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.003 kcal (2) G-P(sol) polarization free energy of solvation -66.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds