Wall clock time and date at job start Tue Mar 31 2020 05:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35902 * 117.00128 * 2 1 4 4 C 1.38751 * 120.05180 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94119 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05681 * 0.02562 * 5 4 3 7 7 C 1.50694 * 119.94682 * 179.97438 * 6 5 4 8 8 C 1.38251 * 120.10967 * 0.02562 * 6 5 4 9 9 C 1.38163 * 120.05712 * 0.23074 * 8 6 5 10 10 C 1.50698 * 120.03100 * 179.74110 * 9 8 6 11 11 N 1.46900 * 109.47138 * 260.00159 * 10 9 8 12 12 C 1.46958 * 111.00107 * 293.79906 * 11 10 9 13 13 C 1.53048 * 109.36384 * 176.81290 * 12 11 10 14 14 N 1.46958 * 109.36457 * 58.40007 * 13 12 11 15 15 C 1.46901 * 111.00114 * 176.81335 * 14 13 12 16 16 C 1.52999 * 109.47181 * 189.88323 * 15 14 13 17 17 H 1.09003 * 109.47144 * 303.81968 * 16 15 14 18 18 C 1.47199 * 109.47519 * 63.82387 * 16 15 14 19 19 N 7.37987 * 108.64037 * 208.18502 * 2 1 3 20 20 C 1.53007 * 109.47069 * 183.82403 * 16 15 14 21 21 C 1.50705 * 109.47114 * 174.99618 * 20 16 15 22 22 H 1.07998 * 119.99594 * 359.97438 * 21 20 16 23 23 C 1.37871 * 119.99932 * 179.97438 * 21 20 16 24 24 N 1.31514 * 119.99940 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99828 * 179.97438 * 23 21 20 26 26 H 1.48491 * 109.47271 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46743 * 120.00705 * 25 23 21 28 28 H 1.48501 * 109.47002 * 239.99909 * 25 23 21 29 29 C 1.46958 * 110.88161 * 300.67947 * 14 13 12 30 30 C 1.46958 * 110.99811 * 169.99856 * 11 10 9 31 31 H 1.09000 * 109.47639 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47462 * 300.00376 * 1 2 3 33 33 H 1.09006 * 109.47204 * 60.00130 * 1 2 3 34 34 H 1.07999 * 120.03453 * 0.02562 * 4 3 2 35 35 H 1.07997 * 119.97558 * 179.97438 * 5 4 3 36 36 H 1.09007 * 109.47501 * 270.01957 * 7 6 5 37 37 H 1.08994 * 109.47308 * 30.01970 * 7 6 5 38 38 H 1.09001 * 109.47714 * 150.02495 * 7 6 5 39 39 H 1.07998 * 119.97294 * 179.97438 * 8 6 5 40 40 H 1.09006 * 109.46621 * 20.00299 * 10 9 8 41 41 H 1.08999 * 109.47007 * 140.00449 * 10 9 8 42 42 H 1.09004 * 109.48391 * 296.77686 * 12 11 10 43 43 H 1.08997 * 109.48831 * 56.84409 * 12 11 10 44 44 H 1.09001 * 109.49116 * 298.43423 * 13 12 11 45 45 H 1.08999 * 109.48945 * 178.36842 * 13 12 11 46 46 H 1.09009 * 109.47017 * 309.87672 * 15 14 13 47 47 H 1.08996 * 109.47723 * 69.87833 * 15 14 13 48 48 H 1.08999 * 109.46896 * 294.99310 * 20 16 15 49 49 H 1.08998 * 109.47033 * 54.99758 * 20 16 15 50 50 H 0.97001 * 120.00150 * 179.97438 * 24 23 21 51 51 H 1.08998 * 109.48749 * 299.35010 * 29 14 13 52 52 H 1.08997 * 109.48831 * 179.28890 * 29 14 13 53 53 H 1.08999 * 109.48956 * 303.15750 * 30 11 10 54 54 H 1.09001 * 109.48666 * 63.22063 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3019 3.6757 -0.0016 7 6 3.9861 5.0184 -0.0028 8 6 4.0560 2.5170 -0.0021 9 6 3.4311 1.2847 -0.0070 10 6 4.2537 0.0221 -0.0134 11 7 4.3181 -0.5134 -1.3799 12 6 2.9936 -0.9605 -1.8333 13 6 3.0880 -1.4361 -3.2849 14 7 4.0689 -2.5265 -3.3775 15 6 4.1334 -3.0620 -4.7439 16 6 4.9710 -4.3423 -4.7510 17 1 5.9574 -4.1335 -4.3367 18 6 4.3036 -5.3698 -3.9351 19 7 3.7878 -6.1636 -3.3028 20 6 5.1178 -4.8478 -6.1876 21 6 6.0429 -6.0373 -6.2096 22 1 6.4825 -6.3964 -5.2908 23 6 6.3281 -6.6669 -7.4025 24 7 5.7932 -6.2292 -8.5214 25 14 7.4754 -8.1409 -7.4298 26 1 7.9410 -8.4313 -6.0500 27 1 6.7518 -9.3214 -7.9665 28 1 8.6449 -7.8419 -8.2947 29 6 5.3934 -2.0794 -2.9241 30 6 5.2990 -1.6038 -1.4725 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 0.2128 2.3204 -0.0005 35 1 1.3340 4.5113 -0.0019 36 1 4.1504 5.3417 -1.0308 37 1 3.3585 5.7465 0.5110 38 1 4.9444 4.9384 0.5104 39 1 5.1344 2.5751 -0.0030 40 1 5.2615 0.2432 0.3380 41 1 3.7930 -0.7150 0.6443 42 1 2.6515 -1.7815 -1.2031 43 1 2.2879 -0.1324 -1.7671 44 1 3.4040 -0.6079 -3.9192 45 1 2.1129 -1.7953 -3.6140 46 1 3.1257 -3.2852 -5.0946 47 1 4.5920 -2.3241 -5.4022 48 1 4.1405 -5.1405 -6.5714 49 1 5.5306 -4.0549 -6.8114 50 1 5.9941 -6.6719 -9.3607 51 1 5.7355 -1.2585 -3.5543 52 1 6.0990 -2.9075 -2.9903 53 1 6.2741 -1.2446 -1.1433 54 1 4.9830 -2.4320 -0.8382 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026715916.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:25 Heat of formation + Delta-G solvation = 1.945496 kcal Electronic energy + Delta-G solvation = -31942.884176 eV Core-core repulsion = 27879.040192 eV Total energy + Delta-G solvation = -4063.843984 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 357.216 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.51071 -40.19434 -38.60013 -38.23553 -36.47865 -35.41722 -33.80301 -32.86912 -32.27735 -31.73733 -29.43776 -28.72307 -27.66405 -26.70125 -25.50373 -24.62406 -23.83049 -23.27827 -22.63074 -21.39151 -20.68320 -18.88649 -18.56767 -18.17544 -17.55555 -17.32640 -16.74183 -16.38118 -16.30178 -15.85510 -15.74251 -15.66519 -15.27225 -15.17521 -15.11638 -14.73614 -14.67785 -14.39458 -14.37754 -14.15371 -13.77372 -13.72194 -13.39502 -13.21323 -13.04511 -12.99994 -12.92144 -12.76860 -12.63711 -12.57272 -12.47944 -12.36357 -12.21610 -12.17284 -12.14332 -11.85229 -11.69294 -11.60326 -11.41704 -11.32395 -10.99930 -10.55317 -9.81623 -9.35809 -9.18042 -8.87882 -8.19175 -6.27268 0.39736 0.50684 1.39120 1.42135 1.52726 2.04690 2.12624 2.41092 2.42116 2.68953 2.93496 3.16173 3.18967 3.34984 3.76266 3.87917 3.96536 4.01032 4.03408 4.19250 4.26105 4.31486 4.35853 4.38649 4.40645 4.46608 4.50511 4.53088 4.58504 4.63921 4.65849 4.72300 4.73721 4.78596 4.80619 4.86099 4.92659 4.94779 5.00748 5.01307 5.11362 5.14991 5.16885 5.24979 5.42092 5.47027 5.51297 5.61592 5.74301 5.79369 5.93308 5.97101 6.04329 6.16590 6.22843 6.24644 6.49553 6.83349 6.93194 7.41171 8.91948 Molecular weight = 357.22amu Principal moments of inertia in cm(-1) A = 0.019216 B = 0.001928 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.800026 B =14522.286602 C =15030.017204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.329 6.329 3 C 0.111 3.889 4 C -0.210 4.210 5 C -0.088 4.088 6 C -0.131 4.131 7 C -0.107 4.107 8 C -0.073 4.073 9 C -0.120 4.120 10 C 0.107 3.893 11 N -0.534 5.534 12 C 0.073 3.927 13 C 0.060 3.940 14 N -0.555 5.555 15 C 0.074 3.926 16 C 0.023 3.977 17 H 0.116 0.884 18 C 0.267 3.733 19 N -0.515 5.515 20 C 0.039 3.961 21 C -0.536 4.536 22 H 0.053 0.947 23 C 0.010 3.990 24 N -0.923 5.923 25 Si 0.949 3.051 26 H -0.270 1.270 27 H -0.285 1.285 28 H -0.272 1.272 29 C 0.053 3.947 30 C 0.062 3.938 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.139 0.861 40 H 0.094 0.906 41 H 0.031 0.969 42 H 0.023 0.977 43 H 0.090 0.910 44 H 0.043 0.957 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.001 0.999 49 H 0.035 0.965 50 H 0.264 0.736 51 H 0.050 0.950 52 H 0.083 0.917 53 H 0.098 0.902 54 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.871 26.110 18.804 32.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.066 3.934 4 C -0.228 4.228 5 C -0.106 4.106 6 C -0.131 4.131 7 C -0.164 4.164 8 C -0.091 4.091 9 C -0.121 4.121 10 C -0.020 4.020 11 N -0.259 5.259 12 C -0.055 4.055 13 C -0.068 4.068 14 N -0.280 5.280 15 C -0.054 4.054 16 C 0.001 3.999 17 H 0.134 0.866 18 C -0.049 4.049 19 N -0.193 5.193 20 C 0.000 4.000 21 C -0.575 4.575 22 H 0.072 0.928 23 C -0.189 4.189 24 N -0.563 5.563 25 Si 0.775 3.225 26 H -0.194 1.194 27 H -0.212 1.212 28 H -0.197 1.197 29 C -0.075 4.075 30 C -0.066 4.066 31 H 0.124 0.876 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.157 0.843 40 H 0.112 0.888 41 H 0.049 0.951 42 H 0.041 0.959 43 H 0.108 0.892 44 H 0.061 0.939 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.086 0.914 48 H 0.020 0.980 49 H 0.053 0.947 50 H 0.073 0.927 51 H 0.069 0.931 52 H 0.101 0.899 53 H 0.116 0.884 54 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -7.571 24.679 19.592 32.407 hybrid contribution 0.238 -0.946 -0.624 1.158 sum -7.333 23.733 18.968 31.254 Atomic orbital electron populations 1.23230 0.77293 1.04849 1.02165 1.86223 1.22723 1.26975 1.88399 1.19006 0.92095 0.84793 0.97533 1.21422 1.00796 0.92093 1.08521 1.21120 0.94259 0.97555 0.97699 1.20127 0.93936 0.96282 1.02804 1.20743 1.00584 0.92340 1.02699 1.20949 1.00447 0.90261 0.97486 1.19213 0.90595 0.95798 1.06490 1.20796 0.99571 0.92747 0.88847 1.62305 1.07705 1.33096 1.22771 1.22201 0.90692 0.98614 0.93955 1.22170 0.95879 0.91862 0.96844 1.62157 1.08531 1.34026 1.23262 1.22030 1.00333 0.93877 0.89209 1.19193 0.98090 0.88356 0.94277 0.86609 1.29429 0.91678 0.92599 0.91211 1.81067 1.12092 1.12719 1.13376 1.18990 0.96084 0.95887 0.89053 1.21559 1.28124 1.14441 0.93336 0.92828 1.25721 0.97679 0.99924 0.95536 1.70040 1.45211 1.42255 0.98800 0.85631 0.79098 0.79483 0.78283 1.19396 1.21164 1.19733 1.22254 0.90359 0.99306 0.95546 1.22151 0.96744 0.91820 0.95916 0.87646 0.91641 0.91761 0.83988 0.83951 0.91026 0.90704 0.90997 0.84330 0.88752 0.95093 0.95876 0.89247 0.93911 0.90526 0.90605 0.91359 0.98048 0.94655 0.92718 0.93132 0.89903 0.88396 0.95705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -6.43 6.63 -92.45 -0.61 -7.04 16 3 C 0.11 2.14 5.41 22.51 0.12 2.26 16 4 C -0.21 -3.27 9.04 22.37 0.20 -3.06 16 5 C -0.09 -1.23 9.69 22.25 0.22 -1.02 16 6 C -0.13 -1.90 5.88 -19.85 -0.12 -2.02 16 7 C -0.11 -1.00 10.01 71.23 0.71 -0.29 16 8 C -0.07 -1.21 9.32 22.25 0.21 -1.00 16 9 C -0.12 -2.34 5.17 -19.77 -0.10 -2.45 16 10 C 0.11 2.17 4.99 85.56 0.43 2.60 16 11 N -0.53 -12.10 4.70 -900.28 -4.23 -16.33 16 12 C 0.07 1.78 4.15 86.31 0.36 2.14 16 13 C 0.06 1.51 5.61 86.31 0.48 2.00 16 14 N -0.55 -15.55 4.38 -895.72 -3.92 -19.47 16 15 C 0.07 2.25 4.33 86.30 0.37 2.62 16 16 C 0.02 0.84 2.12 -12.60 -0.03 0.81 16 17 H 0.12 3.96 6.33 -2.39 -0.02 3.94 16 18 C 0.27 11.40 13.65 89.41 1.22 12.62 16 19 N -0.51 -23.97 18.55 20.03 0.37 -23.60 16 20 C 0.04 1.81 4.42 29.85 0.13 1.94 16 21 C -0.54 -28.73 8.60 25.60 0.22 -28.51 16 22 H 0.05 2.85 7.59 -2.91 -0.02 2.83 16 23 C 0.01 0.57 5.46 84.65 0.46 1.03 16 24 N -0.92 -53.34 13.29 21.45 0.28 -53.06 16 25 Si 0.95 43.83 29.54 68.60 2.03 45.85 16 26 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 27 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 28 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 29 C 0.05 1.32 5.41 86.31 0.47 1.79 16 30 C 0.06 1.40 5.61 86.31 0.48 1.88 16 31 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 33 H 0.06 0.67 7.66 -2.38 -0.02 0.65 16 34 H 0.14 1.62 6.30 -2.91 -0.02 1.60 16 35 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 37 H 0.07 0.52 8.08 -2.39 -0.02 0.51 16 38 H 0.07 0.58 8.08 -2.39 -0.02 0.56 16 39 H 0.14 1.87 8.04 -2.91 -0.02 1.85 16 40 H 0.09 1.58 7.89 -2.38 -0.02 1.56 16 41 H 0.03 0.71 7.82 -2.39 -0.02 0.69 16 42 H 0.02 0.65 7.89 -2.39 -0.02 0.63 16 43 H 0.09 2.12 4.72 -2.39 -0.01 2.11 16 44 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.08 1.87 8.07 -2.39 -0.02 1.85 16 46 H 0.08 2.34 8.03 -2.38 -0.02 2.32 16 47 H 0.07 1.89 8.12 -2.39 -0.02 1.87 16 48 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 49 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 51 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 52 H 0.08 2.08 6.26 -2.39 -0.01 2.07 16 53 H 0.10 1.80 8.07 -2.39 -0.02 1.78 16 54 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -67.36 427.08 1.75 -65.62 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.88 Total: 13.35 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 6.96 Total: -5.31 kcal Atomic # 7 Polarization: -104.97 SS G_CDS: -7.50 Total: -112.47 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.61 Total: -7.04 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -67.36 1.75 -65.62 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026715916.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.562 kcal (2) G-P(sol) polarization free energy of solvation -67.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds