Wall clock time and date at job start Tue Mar 31 2020 05:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99916 * 2 1 4 4 H 1.48490 * 109.47287 * 270.00159 * 3 2 1 5 5 H 1.48501 * 109.47071 * 30.00357 * 3 2 1 6 6 H 1.48505 * 109.47096 * 149.99761 * 3 2 1 7 7 C 1.37873 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99714 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00427 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47283 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99843 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00309 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.99943 * 180.02562 * 11 10 9 14 14 N 1.46494 * 109.47275 * 179.97438 * 13 11 10 15 15 C 1.33855 * 124.19382 * 270.04092 * 14 13 11 16 16 O 1.21540 * 123.78065 * 359.97438 * 15 14 13 17 17 N 1.34642 * 112.43139 * 179.97438 * 15 14 13 18 18 C 1.46941 * 106.46621 * 359.97438 * 17 15 14 19 19 C 1.52354 * 110.38107 * 241.74238 * 18 17 15 20 20 C 1.53376 * 108.42642 * 287.08534 * 19 18 17 21 21 C 1.52706 * 108.47920 * 291.01346 * 20 19 18 22 22 C 1.50605 * 110.73414 * 51.47076 * 21 20 19 23 23 C 1.38869 * 117.87651 * 161.85711 * 22 21 20 24 24 C 1.37940 * 120.54997 * 179.38812 * 23 22 21 25 25 C 1.38271 * 119.76567 * 359.97438 * 24 23 22 26 26 C 1.37932 * 119.78564 * 0.38419 * 25 24 23 27 27 C 1.37787 * 122.42948 * 341.45544 * 22 21 20 28 28 C 1.34885 * 124.19483 * 90.00028 * 14 13 11 29 29 O 1.21233 * 127.22897 * 0.02593 * 28 14 13 30 30 H 0.97003 * 120.00238 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.47024 * 60.00265 * 9 7 2 32 32 H 1.09000 * 109.47206 * 300.00648 * 9 7 2 33 33 H 0.97000 * 119.99970 * 0.02562 * 10 9 7 34 34 H 1.09000 * 109.47402 * 59.99880 * 13 11 10 35 35 H 1.09000 * 109.47368 * 300.00041 * 13 11 10 36 36 H 0.96998 * 126.76570 * 179.97438 * 17 15 14 37 37 H 1.09002 * 109.67211 * 46.82632 * 19 18 17 38 38 H 1.09003 * 109.67367 * 167.35185 * 19 18 17 39 39 H 1.09003 * 109.63453 * 50.71254 * 20 19 18 40 40 H 1.09003 * 109.63660 * 171.31404 * 20 19 18 41 41 H 1.09001 * 109.23084 * 291.14559 * 21 20 19 42 42 H 1.09007 * 109.22541 * 171.78727 * 21 20 19 43 43 H 1.07996 * 119.72690 * 359.35726 * 23 22 21 44 44 H 1.08000 * 120.12241 * 180.02562 * 24 23 22 45 45 H 1.08002 * 120.10409 * 180.09853 * 25 24 23 46 46 H 1.07996 * 119.72193 * 179.70490 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7538 -4.8833 -0.0025 12 8 0.5614 -5.1050 -0.0017 13 6 2.7331 -6.0288 -0.0032 14 7 2.0006 -7.2974 -0.0033 15 6 1.6242 -7.9489 1.1038 16 8 1.8522 -7.5543 2.2305 17 7 0.9648 -9.0902 0.8292 18 6 0.9040 -9.1941 -0.6353 19 6 -0.5443 -9.1859 -1.1081 20 6 -1.1778 -10.5368 -0.7533 21 6 -0.5410 -11.6147 -1.6278 22 6 0.9614 -11.5458 -1.5496 23 6 1.6845 -12.6590 -1.9575 24 6 3.0634 -12.6514 -1.9210 25 6 3.7321 -11.5262 -1.4752 26 6 3.0158 -10.4220 -1.0625 27 6 1.6275 -10.4263 -1.1005 28 6 1.6212 -7.9536 -1.1191 29 8 1.8143 -7.6190 -2.2682 30 1 -0.4851 0.8401 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6247 -2.5570 0.8896 33 1 3.1567 -3.4354 -0.0021 34 1 3.3598 -5.9716 0.8868 35 1 3.3597 -5.9705 -0.8931 36 1 0.6014 -9.7197 1.4715 37 1 -1.0883 -8.3832 -0.6102 38 1 -0.5771 -9.0374 -2.1875 39 1 -0.9951 -10.7624 0.2974 40 1 -2.2508 -10.4990 -0.9416 41 1 -0.8536 -11.4691 -2.6618 42 1 -0.8734 -12.5955 -1.2877 43 1 1.1630 -13.5382 -2.3058 44 1 3.6189 -13.5208 -2.2403 45 1 4.8116 -11.5137 -1.4458 46 1 3.5390 -9.5455 -0.7100 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031630769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:49 Heat of formation + Delta-G solvation = -54.175016 kcal Electronic energy + Delta-G solvation = -32115.291756 eV Core-core repulsion = 27777.348014 eV Total energy + Delta-G solvation = -4337.943741 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.96423 -40.10849 -38.75430 -38.55936 -36.89201 -35.70757 -34.51829 -34.12036 -32.37932 -31.75300 -30.74770 -29.20840 -28.86705 -26.81060 -24.82313 -23.35440 -23.24890 -22.94907 -22.25793 -20.85505 -20.01993 -19.62818 -18.15872 -17.72875 -17.25722 -16.66628 -16.21583 -15.93457 -15.84930 -15.70501 -15.46950 -15.23453 -14.84689 -14.72119 -14.64133 -14.35303 -14.09284 -13.90719 -13.73067 -13.53230 -13.16119 -12.84981 -12.64323 -12.53760 -12.51891 -11.99138 -11.93277 -11.56871 -11.53895 -11.29624 -11.06050 -11.00475 -10.89600 -10.88142 -10.37057 -10.25473 -10.18190 -9.68031 -9.41395 -9.23066 -9.04393 -9.01784 -8.75564 -7.95240 -6.16886 -4.24063 0.80527 0.97682 1.54771 2.09009 2.89700 2.98208 3.20103 3.24963 3.30879 3.31362 3.33433 3.80293 4.01579 4.04896 4.17497 4.36188 4.40366 4.48748 4.65694 4.69187 4.74184 4.88071 4.96678 5.07037 5.13698 5.18750 5.19393 5.25610 5.34613 5.37843 5.46363 5.52704 5.55327 5.57561 5.63685 5.76385 5.84086 6.05832 6.10588 6.14277 6.55851 6.65059 6.95126 7.24758 7.29454 7.35143 7.49613 7.63212 7.95017 8.05640 8.53096 8.73199 8.99085 9.42107 10.93347 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.020959 B = 0.002277 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.592472 B =12293.072691 C =12612.796704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.705 5.705 11 C 0.487 3.513 12 O -0.546 6.546 13 C 0.095 3.905 14 N -0.558 5.558 15 C 0.710 3.290 16 O -0.535 6.535 17 N -0.715 5.715 18 C 0.173 3.827 19 C -0.119 4.119 20 C -0.115 4.115 21 C -0.087 4.087 22 C -0.050 4.050 23 C -0.124 4.124 24 C -0.104 4.104 25 C -0.121 4.121 26 C -0.097 4.097 27 C -0.085 4.085 28 C 0.540 3.460 29 O -0.453 6.453 30 H 0.266 0.734 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.393 0.607 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.438 0.562 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.126 0.874 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.178 -29.317 -3.427 29.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.354 5.354 11 C 0.269 3.731 12 O -0.424 6.424 13 C -0.030 4.030 14 N -0.304 5.304 15 C 0.411 3.589 16 O -0.408 6.408 17 N -0.379 5.379 18 C 0.082 3.918 19 C -0.158 4.158 20 C -0.152 4.152 21 C -0.124 4.124 22 C -0.051 4.051 23 C -0.142 4.142 24 C -0.123 4.123 25 C -0.139 4.139 26 C -0.115 4.115 27 C -0.086 4.086 28 C 0.326 3.674 29 O -0.321 6.321 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.226 0.774 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.283 0.717 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.144 0.856 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.426 -28.788 -3.452 29.196 hybrid contribution 0.826 0.901 0.287 1.256 sum 4.252 -27.887 -3.165 28.387 Atomic orbital electron populations 1.69977 1.06133 1.27347 1.48803 1.24957 0.94929 0.99498 0.94655 0.86391 0.79615 0.82548 0.78219 1.20441 1.21005 1.19705 1.21208 0.93308 0.90329 1.53341 0.91771 1.19145 0.88231 0.81723 0.97862 1.46379 1.11389 1.05694 1.71905 1.20489 0.89619 0.84671 0.78281 1.90674 1.16465 1.84683 1.50613 1.21611 0.94236 0.80435 1.06722 1.45878 1.53834 1.22547 1.08098 1.15792 0.78328 0.80633 0.84121 1.91022 1.59516 1.69971 1.20244 1.45561 1.61067 1.24807 1.06471 1.19721 0.97756 0.92355 0.81949 1.21818 0.90882 0.99661 1.03414 1.21533 1.00474 0.93227 0.99986 1.20581 0.90327 1.00030 1.01413 1.19614 0.95883 0.92583 0.97001 1.21144 0.94196 0.98002 1.00811 1.21171 0.94470 0.98157 0.98466 1.21053 1.00129 0.93228 0.99479 1.21122 0.93153 0.98719 0.98531 1.19007 0.93284 0.93637 1.02686 1.20449 0.77581 0.84372 0.84994 1.90801 1.53043 1.70571 1.17687 0.92420 0.95419 0.95380 0.77448 0.85829 0.86109 0.71716 0.89175 0.88885 0.91333 0.89940 0.89711 0.90058 0.85618 0.85643 0.85583 0.86681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 8 H 0.06 1.62 7.60 -52.48 -0.40 1.23 16 9 C 0.25 6.73 5.43 -5.20 -0.03 6.71 16 10 N -0.70 -14.97 5.55 -61.47 -0.34 -15.31 16 11 C 0.49 10.01 7.90 -10.99 -0.09 9.93 16 12 O -0.55 -13.50 16.43 5.56 0.09 -13.41 16 13 C 0.10 1.43 6.18 -5.20 -0.03 1.40 16 14 N -0.56 -8.54 2.10 -122.08 -0.26 -8.80 16 15 C 0.71 10.82 8.63 -87.86 -0.76 10.07 16 16 O -0.53 -9.81 17.48 5.33 0.09 -9.71 16 17 N -0.71 -8.08 5.63 -54.88 -0.31 -8.38 16 18 C 0.17 1.96 0.82 -134.16 -0.11 1.85 16 19 C -0.12 -1.20 4.97 -26.87 -0.13 -1.33 16 20 C -0.11 -0.76 5.96 -26.69 -0.16 -0.92 16 21 C -0.09 -0.52 5.67 -28.08 -0.16 -0.68 16 22 C -0.05 -0.40 5.74 -104.60 -0.60 -1.00 16 23 C -0.12 -0.85 9.61 -39.46 -0.38 -1.23 16 24 C -0.10 -0.73 10.05 -39.68 -0.40 -1.12 16 25 C -0.12 -0.98 10.05 -39.68 -0.40 -1.38 16 26 C -0.10 -0.97 9.07 -39.45 -0.36 -1.32 16 27 C -0.08 -0.84 5.09 -104.75 -0.53 -1.38 16 28 C 0.54 7.98 5.55 -10.67 -0.06 7.92 16 29 O -0.45 -7.69 17.77 5.60 0.10 -7.59 16 30 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.39 6.93 8.32 -40.82 -0.34 6.59 16 34 H 0.12 1.59 7.86 -51.93 -0.41 1.18 16 35 H 0.12 1.49 8.01 -51.93 -0.42 1.07 16 36 H 0.44 3.82 8.45 -40.82 -0.34 3.47 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 0.96 8.11 -51.93 -0.42 0.54 16 39 H 0.07 0.41 7.40 -51.93 -0.38 0.03 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.35 8.12 -51.92 -0.42 -0.08 16 43 H 0.13 0.58 8.05 -52.49 -0.42 0.16 16 44 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 45 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 46 H 0.12 1.20 7.26 -52.49 -0.38 0.82 16 LS Contribution 388.87 15.07 5.86 5.86 Total: -1.00 -36.99 388.87 -9.69 -46.68 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.03 Total: 6.23 kcal Atomic # 6 Polarization: 18.64 SS G_CDS: -4.61 Total: 14.03 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.17 Total: -58.06 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: 0.28 Total: -30.71 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.99 -9.69 -46.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031630769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.492 kcal (2) G-P(sol) polarization free energy of solvation -36.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds