Wall clock time and date at job start Tue Mar 31 2020 05:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99916 * 2 1 4 4 H 1.48490 * 109.47287 * 270.00159 * 3 2 1 5 5 H 1.48501 * 109.47071 * 30.00357 * 3 2 1 6 6 H 1.48505 * 109.47096 * 149.99761 * 3 2 1 7 7 C 1.37873 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99714 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00427 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47283 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99843 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00309 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.99943 * 180.02562 * 11 10 9 14 14 N 1.46494 * 109.47275 * 179.97438 * 13 11 10 15 15 C 1.33855 * 124.19382 * 270.04092 * 14 13 11 16 16 O 1.21540 * 123.78065 * 359.97438 * 15 14 13 17 17 N 1.34642 * 112.43139 * 179.97438 * 15 14 13 18 18 C 1.46941 * 106.46621 * 359.97438 * 17 15 14 19 19 C 1.52354 * 110.38107 * 241.74238 * 18 17 15 20 20 C 1.53376 * 108.42642 * 287.08534 * 19 18 17 21 21 C 1.52706 * 108.47920 * 291.01346 * 20 19 18 22 22 C 1.50605 * 110.73414 * 51.47076 * 21 20 19 23 23 C 1.38869 * 117.87651 * 161.85711 * 22 21 20 24 24 C 1.37940 * 120.54997 * 179.38812 * 23 22 21 25 25 C 1.38271 * 119.76567 * 359.97438 * 24 23 22 26 26 C 1.37932 * 119.78564 * 0.38419 * 25 24 23 27 27 C 1.37787 * 122.42948 * 341.45544 * 22 21 20 28 28 C 1.34885 * 124.19483 * 90.00028 * 14 13 11 29 29 O 1.21233 * 127.22897 * 0.02593 * 28 14 13 30 30 H 0.97003 * 120.00238 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.47024 * 60.00265 * 9 7 2 32 32 H 1.09000 * 109.47206 * 300.00648 * 9 7 2 33 33 H 0.97000 * 119.99970 * 0.02562 * 10 9 7 34 34 H 1.09000 * 109.47402 * 59.99880 * 13 11 10 35 35 H 1.09000 * 109.47368 * 300.00041 * 13 11 10 36 36 H 0.96998 * 126.76570 * 179.97438 * 17 15 14 37 37 H 1.09002 * 109.67211 * 46.82632 * 19 18 17 38 38 H 1.09003 * 109.67367 * 167.35185 * 19 18 17 39 39 H 1.09003 * 109.63453 * 50.71254 * 20 19 18 40 40 H 1.09003 * 109.63660 * 171.31404 * 20 19 18 41 41 H 1.09001 * 109.23084 * 291.14559 * 21 20 19 42 42 H 1.09007 * 109.22541 * 171.78727 * 21 20 19 43 43 H 1.07996 * 119.72690 * 359.35726 * 23 22 21 44 44 H 1.08000 * 120.12241 * 180.02562 * 24 23 22 45 45 H 1.08002 * 120.10409 * 180.09853 * 25 24 23 46 46 H 1.07996 * 119.72193 * 179.70490 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7538 -4.8833 -0.0025 12 8 0.5614 -5.1050 -0.0017 13 6 2.7331 -6.0288 -0.0032 14 7 2.0006 -7.2974 -0.0033 15 6 1.6242 -7.9489 1.1038 16 8 1.8522 -7.5543 2.2305 17 7 0.9648 -9.0902 0.8292 18 6 0.9040 -9.1941 -0.6353 19 6 -0.5443 -9.1859 -1.1081 20 6 -1.1778 -10.5368 -0.7533 21 6 -0.5410 -11.6147 -1.6278 22 6 0.9614 -11.5458 -1.5496 23 6 1.6845 -12.6590 -1.9575 24 6 3.0634 -12.6514 -1.9210 25 6 3.7321 -11.5262 -1.4752 26 6 3.0158 -10.4220 -1.0625 27 6 1.6275 -10.4263 -1.1005 28 6 1.6212 -7.9536 -1.1191 29 8 1.8143 -7.6190 -2.2682 30 1 -0.4851 0.8401 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6247 -2.5570 0.8896 33 1 3.1567 -3.4354 -0.0021 34 1 3.3598 -5.9716 0.8868 35 1 3.3597 -5.9705 -0.8931 36 1 0.6014 -9.7197 1.4715 37 1 -1.0883 -8.3832 -0.6102 38 1 -0.5771 -9.0374 -2.1875 39 1 -0.9951 -10.7624 0.2974 40 1 -2.2508 -10.4990 -0.9416 41 1 -0.8536 -11.4691 -2.6618 42 1 -0.8734 -12.5955 -1.2877 43 1 1.1630 -13.5382 -2.3058 44 1 3.6189 -13.5208 -2.2403 45 1 4.8116 -11.5137 -1.4458 46 1 3.5390 -9.5455 -0.7100 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031630769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:48 Heat of formation + Delta-G solvation = -81.040148 kcal Electronic energy + Delta-G solvation = -32116.456715 eV Core-core repulsion = 27777.348014 eV Total energy + Delta-G solvation = -4339.108701 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.152 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.05377 -41.00237 -40.33772 -39.78432 -37.81480 -36.82882 -36.23399 -35.32851 -34.43272 -32.50854 -31.36829 -30.73310 -29.64826 -28.64370 -25.77898 -24.84383 -24.15678 -23.90207 -23.29722 -22.17098 -21.38092 -20.56460 -19.42911 -19.11418 -18.36801 -18.04221 -17.49168 -17.28439 -16.89365 -16.79537 -16.63105 -16.40066 -16.36361 -16.19543 -15.66743 -15.47192 -15.30328 -14.92175 -14.67895 -14.37308 -14.33217 -14.24756 -14.06308 -13.82312 -13.33293 -13.27994 -13.13806 -12.96916 -12.72620 -12.52586 -12.29349 -12.25561 -12.04551 -11.95373 -11.74564 -11.64642 -11.52725 -11.25411 -10.83949 -10.76828 -10.57264 -9.96193 -9.86812 -9.61339 -8.31678 -6.48747 0.14869 0.35135 0.41996 0.95495 1.42124 1.44764 1.52062 1.56069 1.73060 1.93356 2.29528 2.49587 2.60427 2.93350 3.03338 3.21868 3.43048 3.70832 3.72932 3.81274 3.89213 4.01720 4.05312 4.09010 4.20119 4.22279 4.38236 4.45523 4.48773 4.58451 4.72691 4.83134 4.87534 5.02091 5.03929 5.09393 5.16134 5.17450 5.28442 5.39573 5.46468 5.53912 5.56298 5.60040 5.66291 5.78972 5.79366 6.00717 6.13788 6.60153 6.71682 6.92341 7.17662 7.32758 8.80708 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.020959 B = 0.002277 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.592472 B =12293.072691 C =12612.796704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.556 4.556 8 H 0.087 0.913 9 C 0.268 3.732 10 N -0.698 5.698 11 C 0.482 3.518 12 O -0.593 6.593 13 C 0.103 3.897 14 N -0.565 5.565 15 C 0.706 3.294 16 O -0.571 6.571 17 N -0.694 5.694 18 C 0.181 3.819 19 C -0.121 4.121 20 C -0.109 4.109 21 C -0.084 4.084 22 C -0.053 4.053 23 C -0.122 4.122 24 C -0.102 4.102 25 C -0.129 4.129 26 C -0.119 4.119 27 C -0.104 4.104 28 C 0.533 3.467 29 O -0.482 6.482 30 H 0.269 0.731 31 H -0.012 1.012 32 H -0.013 1.013 33 H 0.413 0.587 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.450 0.550 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.156 0.844 44 H 0.153 0.847 45 H 0.140 0.860 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.762 -31.651 -4.031 32.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.594 4.594 8 H 0.105 0.895 9 C 0.146 3.854 10 N -0.348 5.348 11 C 0.267 3.733 12 O -0.475 6.475 13 C -0.022 4.022 14 N -0.310 5.310 15 C 0.407 3.593 16 O -0.447 6.447 17 N -0.359 5.359 18 C 0.091 3.909 19 C -0.160 4.160 20 C -0.146 4.146 21 C -0.121 4.121 22 C -0.054 4.054 23 C -0.140 4.140 24 C -0.120 4.120 25 C -0.147 4.147 26 C -0.137 4.137 27 C -0.105 4.105 28 C 0.321 3.679 29 O -0.351 6.351 30 H 0.078 0.922 31 H 0.006 0.994 32 H 0.005 0.995 33 H 0.250 0.750 34 H 0.169 0.831 35 H 0.171 0.829 36 H 0.298 0.702 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.127 0.873 43 H 0.173 0.827 44 H 0.171 0.829 45 H 0.158 0.842 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.045 -31.191 -4.062 31.856 hybrid contribution 0.299 1.531 0.429 1.618 sum 5.343 -29.660 -3.634 30.355 Atomic orbital electron populations 1.70144 1.08345 1.28633 1.49884 1.26104 0.95807 1.04036 0.93774 0.85118 0.78484 0.76743 0.78641 1.19510 1.20978 1.17794 1.21610 0.94446 0.90324 1.53016 0.89473 1.18571 0.88622 0.84162 0.94094 1.46078 1.11634 1.05004 1.72102 1.21475 0.89996 0.85491 0.76328 1.90646 1.19027 1.85443 1.52356 1.21673 0.92778 0.78157 1.09575 1.46026 1.53938 1.22453 1.08547 1.15960 0.78459 0.81354 0.83551 1.90989 1.61207 1.71110 1.21380 1.45493 1.59570 1.23664 1.07126 1.19753 0.98252 0.91608 0.81282 1.21861 0.89959 1.01393 1.02768 1.21559 1.01184 0.91146 1.00704 1.20654 0.88776 1.00931 1.01719 1.19899 0.97166 0.92132 0.96187 1.21518 0.94358 0.98388 0.99720 1.21555 0.94890 0.98410 0.97112 1.21295 1.01001 0.93111 0.99295 1.21173 0.93457 0.99184 0.99935 1.18937 0.93285 0.93562 1.04714 1.21096 0.77062 0.85245 0.84497 1.90767 1.54210 1.71580 1.18586 0.92214 0.99411 0.99517 0.75048 0.83107 0.82914 0.70196 0.91374 0.89421 0.90564 0.88295 0.88968 0.87279 0.82658 0.82912 0.84197 0.88144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 2 C 0.00 0.13 5.46 84.65 0.46 0.60 16 3 Si 0.99 42.90 29.54 68.60 2.03 44.93 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 6 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.56 -30.72 9.28 25.60 0.24 -30.49 16 8 H 0.09 4.31 7.60 -2.91 -0.02 4.28 16 9 C 0.27 15.15 5.43 85.63 0.46 15.61 16 10 N -0.70 -30.47 5.55 -466.79 -2.59 -33.06 16 11 C 0.48 20.54 7.90 87.66 0.69 21.23 16 12 O -0.59 -31.08 16.43 -3.03 -0.05 -31.13 16 13 C 0.10 3.11 6.18 85.63 0.53 3.63 16 14 N -0.56 -17.74 2.10 -777.31 -1.63 -19.37 16 15 C 0.71 22.10 8.63 179.38 1.55 23.64 16 16 O -0.57 -21.48 17.48 -3.84 -0.07 -21.55 16 17 N -0.69 -15.86 5.63 -445.89 -2.51 -18.37 16 18 C 0.18 4.14 0.82 1.85 0.00 4.14 16 19 C -0.12 -2.45 4.97 30.51 0.15 -2.30 16 20 C -0.11 -1.23 5.96 30.62 0.18 -1.05 16 21 C -0.08 -0.74 5.67 29.72 0.17 -0.57 16 22 C -0.05 -0.73 5.74 -19.85 -0.11 -0.84 16 23 C -0.12 -1.25 9.61 22.35 0.21 -1.04 16 24 C -0.10 -1.09 10.05 22.21 0.22 -0.87 16 25 C -0.13 -1.88 10.05 22.21 0.22 -1.66 16 26 C -0.12 -2.32 9.07 22.35 0.20 -2.12 16 27 C -0.10 -1.98 5.09 -19.95 -0.10 -2.08 16 28 C 0.53 16.26 5.55 87.81 0.49 16.75 16 29 O -0.48 -16.91 17.77 -2.89 -0.05 -16.96 16 30 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 31 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 32 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 33 H 0.41 14.44 8.32 -92.71 -0.77 13.67 16 34 H 0.15 3.75 7.86 -2.39 -0.02 3.73 16 35 H 0.15 3.63 8.01 -2.39 -0.02 3.61 16 36 H 0.45 7.69 8.45 -92.71 -0.78 6.91 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.09 1.85 8.11 -2.39 -0.02 1.83 16 39 H 0.08 0.76 7.40 -2.39 -0.02 0.74 16 40 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.11 0.43 8.12 -2.38 -0.02 0.41 16 43 H 0.16 0.67 8.05 -2.91 -0.02 0.64 16 44 H 0.15 0.77 8.06 -2.91 -0.02 0.75 16 45 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 46 H 0.10 2.16 7.26 -2.91 -0.02 2.14 16 Total: -1.00 -85.60 388.87 0.48 -85.12 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: -0.51 Total: 24.68 kcal Atomic # 6 Polarization: 37.02 SS G_CDS: 5.57 Total: 42.59 kcal Atomic # 7 Polarization: -121.24 SS G_CDS: -6.44 Total: -127.68 kcal Atomic # 8 Polarization: -69.47 SS G_CDS: -0.17 Total: -69.63 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -85.60 0.48 -85.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031630769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.079 kcal (2) G-P(sol) polarization free energy of solvation -85.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds