Wall clock time and date at job start Tue Mar 31 2020 05:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00456 * 2 1 4 4 H 1.48497 * 109.47227 * 240.00347 * 3 2 1 5 5 H 1.48502 * 109.47034 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47081 * 119.99767 * 3 2 1 7 7 C 1.37880 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99731 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.46938 * 180.02562 * 9 7 2 11 11 C 1.34782 * 120.00020 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99916 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.99790 * 179.97438 * 11 10 9 14 14 N 1.46506 * 109.46966 * 179.97438 * 13 11 10 15 15 C 1.33846 * 124.19360 * 270.31311 * 14 13 11 16 16 O 1.21536 * 123.78883 * 0.02562 * 15 14 13 17 17 N 1.34651 * 112.42520 * 180.20842 * 15 14 13 18 18 C 1.46944 * 106.47092 * 359.57595 * 17 15 14 19 19 C 1.52355 * 110.38575 * 118.47577 * 18 17 15 20 20 C 1.53388 * 108.41538 * 172.89726 * 19 18 17 21 21 C 1.52717 * 108.45338 * 290.95044 * 20 19 18 22 22 C 1.50607 * 110.74070 * 51.43027 * 21 20 19 23 23 C 1.38862 * 117.87289 * 161.78675 * 22 21 20 24 24 C 1.37947 * 120.54693 * 179.71076 * 23 22 21 25 25 C 1.38261 * 119.76808 * 359.97438 * 24 23 22 26 26 C 1.37930 * 119.78754 * 0.14307 * 25 24 23 27 27 C 1.37792 * 122.42914 * 341.73421 * 22 21 20 28 28 C 1.34888 * 124.18812 * 90.00260 * 14 13 11 29 29 O 1.21231 * 127.23416 * 359.97438 * 28 14 13 30 30 H 0.97003 * 119.99466 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47584 * 60.00847 * 9 7 2 32 32 H 1.09005 * 109.47710 * 300.00109 * 9 7 2 33 33 H 0.97000 * 120.00566 * 0.02562 * 10 9 7 34 34 H 1.09000 * 109.47161 * 60.00707 * 13 11 10 35 35 H 1.08997 * 109.47459 * 300.00443 * 13 11 10 36 36 H 0.97001 * 126.76807 * 179.84828 * 17 15 14 37 37 H 1.09001 * 109.68292 * 292.62674 * 19 18 17 38 38 H 1.08998 * 109.67832 * 53.16972 * 19 18 17 39 39 H 1.08997 * 109.63909 * 50.63796 * 20 19 18 40 40 H 1.08991 * 109.64042 * 171.25732 * 20 19 18 41 41 H 1.09008 * 109.21961 * 171.74933 * 21 20 19 42 42 H 1.08994 * 109.22679 * 291.09975 * 21 20 19 43 43 H 1.08000 * 119.72937 * 359.73078 * 23 22 21 44 44 H 1.07997 * 120.11566 * 180.02562 * 24 23 22 45 45 H 1.08002 * 120.11127 * 180.16097 * 25 24 23 46 46 H 1.08001 * 119.72062 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4991 -0.0005 10 7 2.2028 -3.6127 -0.0005 11 6 1.7534 -4.8834 0.0000 12 8 0.5610 -5.1049 0.0000 13 6 2.7327 -6.0289 -0.0006 14 7 2.0001 -7.2976 0.0008 15 6 1.6200 -7.9455 1.1085 16 8 1.8433 -7.5472 2.2348 17 7 0.9657 -9.0902 0.8352 18 6 0.9047 -9.1957 -0.6292 19 6 1.6359 -10.4458 -1.1022 20 6 1.3942 -10.6079 -2.6082 21 6 -0.0731 -10.9710 -2.8260 22 6 -0.9747 -10.0006 -2.1093 23 6 -2.3057 -9.9406 -2.5006 24 6 -3.1814 -9.0758 -1.8776 25 6 -2.7312 -8.2620 -0.8546 26 6 -1.4090 -8.3180 -0.4658 27 6 -0.5245 -9.1857 -1.0935 28 6 1.6199 -7.9545 -1.1143 29 8 1.8115 -7.6204 -2.2638 30 1 -0.4849 0.8401 0.0004 31 1 0.6239 -2.5567 -0.8903 32 1 0.6244 -2.5571 0.8897 33 1 3.1565 -3.4356 -0.0002 34 1 3.3600 -5.9711 0.8890 35 1 3.3588 -5.9713 -0.8910 36 1 0.6024 -9.7192 1.4781 37 1 2.7039 -10.3407 -0.9113 38 1 1.2520 -11.3179 -0.5730 39 1 1.6194 -9.6713 -3.1183 40 1 2.0300 -11.4027 -2.9979 41 1 -0.2945 -10.9456 -3.8930 42 1 -0.2542 -11.9765 -2.4465 43 1 -2.6583 -10.5766 -3.2991 44 1 -4.2152 -9.0352 -2.1872 45 1 -3.4126 -7.5847 -0.3612 46 1 -1.0584 -7.6815 0.3332 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031630771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:52 Heat of formation + Delta-G solvation = -53.136448 kcal Electronic energy + Delta-G solvation = -32506.198259 eV Core-core repulsion = 28168.299554 eV Total energy + Delta-G solvation = -4337.898706 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.94874 -39.96834 -38.75164 -38.55276 -36.64808 -35.79109 -34.59008 -34.14219 -32.37603 -31.46978 -30.59137 -29.18633 -28.73438 -26.80979 -24.75234 -23.19222 -23.11155 -22.88678 -22.01635 -21.29677 -19.86710 -19.46885 -18.19878 -17.72993 -17.22446 -16.45971 -16.22818 -15.98864 -15.72508 -15.60748 -15.38814 -15.10633 -14.87722 -14.64633 -14.49748 -14.17185 -14.15985 -13.96971 -13.49889 -13.28363 -13.13973 -12.82705 -12.61811 -12.53217 -12.44271 -11.97980 -11.77000 -11.58560 -11.51512 -11.12238 -11.02419 -10.91341 -10.88714 -10.86743 -10.36809 -10.25932 -10.14488 -9.70101 -9.42779 -9.03284 -8.93642 -8.80276 -8.74965 -7.94765 -6.16725 -4.23996 0.99312 1.23743 1.58687 2.10853 2.88078 2.98364 3.21016 3.26042 3.30592 3.32144 3.48649 3.91800 4.02739 4.07912 4.20032 4.36312 4.52079 4.62974 4.74535 4.86882 4.90092 4.97403 5.14133 5.17533 5.19453 5.19801 5.26172 5.30093 5.34591 5.50296 5.52195 5.55346 5.58062 5.65305 5.81129 5.91106 5.98621 6.29994 6.33638 6.41460 6.64554 6.81303 6.95056 7.25359 7.30724 7.35646 7.49843 7.63140 7.95221 8.04465 8.53451 8.73323 8.99455 9.42123 10.93473 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.014291 B = 0.002706 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.843212 B =10346.701320 C =11113.639611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.252 3.748 10 N -0.705 5.705 11 C 0.486 3.514 12 O -0.545 6.545 13 C 0.095 3.905 14 N -0.558 5.558 15 C 0.709 3.291 16 O -0.535 6.535 17 N -0.718 5.718 18 C 0.174 3.826 19 C -0.110 4.110 20 C -0.129 4.129 21 C -0.082 4.082 22 C -0.052 4.052 23 C -0.129 4.129 24 C -0.103 4.103 25 C -0.121 4.121 26 C -0.084 4.084 27 C -0.097 4.097 28 C 0.541 3.459 29 O -0.452 6.452 30 H 0.267 0.733 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.392 0.608 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.439 0.561 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.385 -26.798 -4.186 27.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.354 5.354 11 C 0.269 3.731 12 O -0.423 6.423 13 C -0.030 4.030 14 N -0.303 5.303 15 C 0.410 3.590 16 O -0.407 6.407 17 N -0.382 5.382 18 C 0.083 3.917 19 C -0.148 4.148 20 C -0.167 4.167 21 C -0.118 4.118 22 C -0.052 4.052 23 C -0.147 4.147 24 C -0.121 4.121 25 C -0.139 4.139 26 C -0.103 4.103 27 C -0.098 4.098 28 C 0.327 3.673 29 O -0.320 6.320 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.225 0.775 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.284 0.716 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.649 -26.278 -4.212 26.622 hybrid contribution 0.529 1.038 0.390 1.229 sum 1.178 -25.240 -3.822 25.555 Atomic orbital electron populations 1.69968 1.06139 1.27452 1.48705 1.24953 0.94924 0.99478 0.94636 0.86454 0.79405 0.82218 0.78716 1.20022 1.21070 1.20024 1.21176 0.93275 0.90357 1.53482 0.91822 1.19131 0.88212 0.81699 0.97820 1.46377 1.11366 1.05696 1.71944 1.20500 0.89645 0.84677 0.78309 1.90673 1.16427 1.84670 1.50540 1.21613 0.94225 0.80424 1.06716 1.45873 1.53739 1.22605 1.08075 1.15804 0.78416 0.80599 0.84152 1.91025 1.59688 1.69724 1.20294 1.45558 1.61245 1.24804 1.06622 1.19715 0.94361 0.96117 0.81548 1.21706 1.00355 0.95069 0.97713 1.21715 0.96204 1.03988 0.94763 1.20506 0.93481 0.97490 1.00361 1.19558 0.94507 0.96233 0.94951 1.21087 0.92749 1.00102 1.00730 1.21188 0.99764 0.95478 0.95670 1.21122 0.95748 0.99293 0.97703 1.21231 0.93537 0.96329 0.99170 1.18987 0.92245 0.99700 0.98872 1.20497 0.77368 0.84418 0.84987 1.90765 1.53333 1.70270 1.17627 0.92367 0.95445 0.95431 0.77474 0.85860 0.86096 0.71588 0.90244 0.89323 0.89424 0.90227 0.90097 0.90238 0.85774 0.85728 0.85507 0.85704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -14.88 9.28 -34.44 -0.32 -15.20 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.77 5.43 -5.19 -0.03 6.74 16 10 N -0.71 -14.98 5.55 -61.47 -0.34 -15.32 16 11 C 0.49 10.00 7.90 -10.98 -0.09 9.91 16 12 O -0.54 -13.42 16.43 5.56 0.09 -13.33 16 13 C 0.10 1.43 6.18 -5.19 -0.03 1.40 16 14 N -0.56 -8.51 2.10 -122.07 -0.26 -8.77 16 15 C 0.71 10.68 8.32 -87.86 -0.73 9.95 16 16 O -0.53 -9.68 17.49 5.33 0.09 -9.59 16 17 N -0.72 -7.96 5.04 -54.88 -0.28 -8.24 16 18 C 0.17 1.96 0.87 -134.16 -0.12 1.84 16 19 C -0.11 -0.86 5.09 -26.86 -0.14 -0.99 16 20 C -0.13 -0.98 5.95 -26.68 -0.16 -1.14 16 21 C -0.08 -0.59 5.67 -28.07 -0.16 -0.75 16 22 C -0.05 -0.53 5.74 -104.60 -0.60 -1.13 16 23 C -0.13 -1.23 9.61 -39.46 -0.38 -1.61 16 24 C -0.10 -1.06 10.05 -39.68 -0.40 -1.46 16 25 C -0.12 -1.50 10.05 -39.69 -0.40 -1.90 16 26 C -0.08 -1.17 9.12 -39.45 -0.36 -1.53 16 27 C -0.10 -1.17 4.93 -104.75 -0.52 -1.69 16 28 C 0.54 7.96 6.62 -10.67 -0.07 7.89 16 29 O -0.45 -7.54 16.01 5.60 0.09 -7.45 16 30 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.39 6.94 8.32 -40.82 -0.34 6.60 16 34 H 0.12 1.58 7.87 -51.93 -0.41 1.17 16 35 H 0.12 1.49 8.01 -51.93 -0.42 1.07 16 36 H 0.44 3.67 8.96 -40.82 -0.37 3.30 16 37 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 38 H 0.09 0.51 8.11 -51.93 -0.42 0.09 16 39 H 0.09 0.90 6.12 -51.93 -0.32 0.58 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.52 8.12 -51.92 -0.42 0.10 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.12 0.86 8.05 -52.49 -0.42 0.44 16 44 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 45 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 46 H 0.12 2.01 7.33 -52.49 -0.38 1.62 16 LS Contribution 386.60 15.07 5.83 5.83 Total: -1.00 -36.83 386.60 -9.64 -46.47 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -5.99 Total: 7.99 kcal Atomic # 6 Polarization: 16.62 SS G_CDS: -4.59 Total: 12.03 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -0.14 Total: -57.95 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: 0.27 Total: -30.36 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.83 -9.64 -46.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031630771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.666 kcal (2) G-P(sol) polarization free energy of solvation -36.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds