Wall clock time and date at job start Tue Mar 31 2020 05:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00456 * 2 1 4 4 H 1.48497 * 109.47227 * 240.00347 * 3 2 1 5 5 H 1.48502 * 109.47034 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47081 * 119.99767 * 3 2 1 7 7 C 1.37880 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99731 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.46938 * 180.02562 * 9 7 2 11 11 C 1.34782 * 120.00020 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99916 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.99790 * 179.97438 * 11 10 9 14 14 N 1.46506 * 109.46966 * 179.97438 * 13 11 10 15 15 C 1.33846 * 124.19360 * 270.31311 * 14 13 11 16 16 O 1.21536 * 123.78883 * 0.02562 * 15 14 13 17 17 N 1.34651 * 112.42520 * 180.20842 * 15 14 13 18 18 C 1.46944 * 106.47092 * 359.57595 * 17 15 14 19 19 C 1.52355 * 110.38575 * 118.47577 * 18 17 15 20 20 C 1.53388 * 108.41538 * 172.89726 * 19 18 17 21 21 C 1.52717 * 108.45338 * 290.95044 * 20 19 18 22 22 C 1.50607 * 110.74070 * 51.43027 * 21 20 19 23 23 C 1.38862 * 117.87289 * 161.78675 * 22 21 20 24 24 C 1.37947 * 120.54693 * 179.71076 * 23 22 21 25 25 C 1.38261 * 119.76808 * 359.97438 * 24 23 22 26 26 C 1.37930 * 119.78754 * 0.14307 * 25 24 23 27 27 C 1.37792 * 122.42914 * 341.73421 * 22 21 20 28 28 C 1.34888 * 124.18812 * 90.00260 * 14 13 11 29 29 O 1.21231 * 127.23416 * 359.97438 * 28 14 13 30 30 H 0.97003 * 119.99466 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47584 * 60.00847 * 9 7 2 32 32 H 1.09005 * 109.47710 * 300.00109 * 9 7 2 33 33 H 0.97000 * 120.00566 * 0.02562 * 10 9 7 34 34 H 1.09000 * 109.47161 * 60.00707 * 13 11 10 35 35 H 1.08997 * 109.47459 * 300.00443 * 13 11 10 36 36 H 0.97001 * 126.76807 * 179.84828 * 17 15 14 37 37 H 1.09001 * 109.68292 * 292.62674 * 19 18 17 38 38 H 1.08998 * 109.67832 * 53.16972 * 19 18 17 39 39 H 1.08997 * 109.63909 * 50.63796 * 20 19 18 40 40 H 1.08991 * 109.64042 * 171.25732 * 20 19 18 41 41 H 1.09008 * 109.21961 * 171.74933 * 21 20 19 42 42 H 1.08994 * 109.22679 * 291.09975 * 21 20 19 43 43 H 1.08000 * 119.72937 * 359.73078 * 23 22 21 44 44 H 1.07997 * 120.11566 * 180.02562 * 24 23 22 45 45 H 1.08002 * 120.11127 * 180.16097 * 25 24 23 46 46 H 1.08001 * 119.72062 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4991 -0.0005 10 7 2.2028 -3.6127 -0.0005 11 6 1.7534 -4.8834 0.0000 12 8 0.5610 -5.1049 0.0000 13 6 2.7327 -6.0289 -0.0006 14 7 2.0001 -7.2976 0.0008 15 6 1.6200 -7.9455 1.1085 16 8 1.8433 -7.5472 2.2348 17 7 0.9657 -9.0902 0.8352 18 6 0.9047 -9.1957 -0.6292 19 6 1.6359 -10.4458 -1.1022 20 6 1.3942 -10.6079 -2.6082 21 6 -0.0731 -10.9710 -2.8260 22 6 -0.9747 -10.0006 -2.1093 23 6 -2.3057 -9.9406 -2.5006 24 6 -3.1814 -9.0758 -1.8776 25 6 -2.7312 -8.2620 -0.8546 26 6 -1.4090 -8.3180 -0.4658 27 6 -0.5245 -9.1857 -1.0935 28 6 1.6199 -7.9545 -1.1143 29 8 1.8115 -7.6204 -2.2638 30 1 -0.4849 0.8401 0.0004 31 1 0.6239 -2.5567 -0.8903 32 1 0.6244 -2.5571 0.8897 33 1 3.1565 -3.4356 -0.0002 34 1 3.3600 -5.9711 0.8890 35 1 3.3588 -5.9713 -0.8910 36 1 0.6024 -9.7192 1.4781 37 1 2.7039 -10.3407 -0.9113 38 1 1.2520 -11.3179 -0.5730 39 1 1.6194 -9.6713 -3.1183 40 1 2.0300 -11.4027 -2.9979 41 1 -0.2945 -10.9456 -3.8930 42 1 -0.2542 -11.9765 -2.4465 43 1 -2.6583 -10.5766 -3.2991 44 1 -4.2152 -9.0352 -2.1872 45 1 -3.4126 -7.5847 -0.3612 46 1 -1.0584 -7.6815 0.3332 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031630771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:51 Heat of formation + Delta-G solvation = -80.047442 kcal Electronic energy + Delta-G solvation = -32507.365208 eV Core-core repulsion = 28168.299554 eV Total energy + Delta-G solvation = -4339.065654 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.03368 -41.00209 -40.35391 -39.75824 -37.67435 -36.86206 -36.24138 -35.48193 -34.44038 -32.37927 -31.36606 -30.73146 -29.57853 -28.65705 -25.72851 -24.85138 -24.10046 -23.88379 -23.07837 -22.52417 -21.49020 -20.34051 -19.45139 -19.19250 -18.41295 -17.94589 -17.52306 -17.20249 -17.06066 -16.66584 -16.61374 -16.45054 -16.35951 -16.10730 -15.75815 -15.33380 -15.18885 -14.99787 -14.69218 -14.33835 -14.30899 -14.08924 -14.02409 -13.86165 -13.44034 -13.26527 -13.17549 -12.99388 -12.69579 -12.50007 -12.35611 -12.27191 -12.05515 -11.86409 -11.72315 -11.60597 -11.56219 -11.16980 -10.83482 -10.76348 -10.57860 -9.96464 -9.84886 -9.63486 -8.32381 -6.49831 0.08092 0.35178 0.45660 0.98051 1.41276 1.45865 1.52897 1.54016 1.73433 1.95521 2.29333 2.49320 2.58590 2.98182 3.02503 3.21949 3.44826 3.71629 3.74864 3.86050 3.89812 4.05787 4.08070 4.10419 4.19808 4.24366 4.40104 4.44301 4.50456 4.64131 4.80088 4.85657 4.89111 4.98586 5.02758 5.12384 5.16041 5.20680 5.38674 5.39165 5.45506 5.51816 5.52534 5.59628 5.67104 5.78398 5.82469 5.97774 6.18169 6.59202 6.71782 6.93503 7.17211 7.32949 8.79861 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.014291 B = 0.002706 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.843212 B =10346.701320 C =11113.639611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.988 3.012 4 H -0.260 1.260 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.558 4.558 8 H 0.088 0.912 9 C 0.270 3.730 10 N -0.698 5.698 11 C 0.479 3.521 12 O -0.592 6.592 13 C 0.104 3.896 14 N -0.565 5.565 15 C 0.705 3.295 16 O -0.572 6.572 17 N -0.697 5.697 18 C 0.180 3.820 19 C -0.106 4.106 20 C -0.128 4.128 21 C -0.080 4.080 22 C -0.051 4.051 23 C -0.125 4.125 24 C -0.103 4.103 25 C -0.145 4.145 26 C -0.113 4.113 27 C -0.111 4.111 28 C 0.533 3.467 29 O -0.476 6.476 30 H 0.269 0.731 31 H -0.014 1.014 32 H -0.015 1.015 33 H 0.413 0.587 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.452 0.548 37 H 0.088 0.912 38 H 0.118 0.882 39 H 0.057 0.943 40 H 0.111 0.889 41 H 0.095 0.905 42 H 0.111 0.889 43 H 0.160 0.840 44 H 0.150 0.850 45 H 0.121 0.879 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.308 -29.251 -5.703 29.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.184 1.184 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.596 4.596 8 H 0.106 0.894 9 C 0.147 3.853 10 N -0.349 5.349 11 C 0.265 3.735 12 O -0.474 6.474 13 C -0.021 4.021 14 N -0.310 5.310 15 C 0.406 3.594 16 O -0.448 6.448 17 N -0.361 5.361 18 C 0.090 3.910 19 C -0.144 4.144 20 C -0.166 4.166 21 C -0.116 4.116 22 C -0.051 4.051 23 C -0.143 4.143 24 C -0.121 4.121 25 C -0.163 4.163 26 C -0.131 4.131 27 C -0.112 4.112 28 C 0.320 3.680 29 O -0.346 6.346 30 H 0.078 0.922 31 H 0.004 0.996 32 H 0.003 0.997 33 H 0.249 0.751 34 H 0.169 0.831 35 H 0.173 0.827 36 H 0.300 0.700 37 H 0.106 0.894 38 H 0.137 0.863 39 H 0.076 0.924 40 H 0.129 0.871 41 H 0.113 0.887 42 H 0.129 0.871 43 H 0.178 0.822 44 H 0.168 0.832 45 H 0.139 0.861 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.608 -28.799 -5.735 29.480 hybrid contribution -0.189 1.748 0.818 1.939 sum 2.419 -27.051 -4.917 27.601 Atomic orbital electron populations 1.70144 1.08398 1.28707 1.49811 1.26116 0.95795 1.04076 0.93709 0.85166 0.77883 0.76312 0.79616 1.18443 1.21097 1.18552 1.21590 0.94465 0.90327 1.53174 0.89416 1.18539 0.88603 0.84222 0.93917 1.46071 1.11588 1.05003 1.72192 1.21550 0.90079 0.85554 0.76352 1.90657 1.19057 1.85434 1.52230 1.21678 0.92699 0.78106 1.09643 1.46034 1.53907 1.22483 1.08593 1.15973 0.78552 0.81298 0.83566 1.90990 1.61459 1.70832 1.21507 1.45475 1.59707 1.23633 1.07301 1.19876 0.94135 0.96166 0.80869 1.21843 1.00485 0.93758 0.98333 1.21733 0.97183 1.03618 0.94028 1.20638 0.92297 0.97843 1.00861 1.20027 0.95536 0.95793 0.93770 1.21551 0.92291 0.99640 1.00823 1.21505 1.01317 0.94709 0.94548 1.21246 0.95364 1.00489 0.99165 1.21104 0.94899 0.97462 0.99673 1.19100 0.92085 1.00181 0.99873 1.21160 0.76947 0.85337 0.84514 1.90741 1.54312 1.71180 1.18368 0.92212 0.99607 0.99708 0.75052 0.83098 0.82746 0.70049 0.89355 0.86350 0.92399 0.87082 0.88682 0.87097 0.82201 0.83225 0.86097 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 2 C 0.00 0.15 5.46 84.66 0.46 0.61 16 3 Si 0.99 43.03 29.54 68.60 2.03 45.06 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 5 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.56 -31.01 9.28 25.60 0.24 -30.77 16 8 H 0.09 4.34 7.60 -2.91 -0.02 4.32 16 9 C 0.27 15.39 5.43 85.63 0.46 15.85 16 10 N -0.70 -30.71 5.55 -466.77 -2.59 -33.30 16 11 C 0.48 20.61 7.90 87.66 0.69 21.30 16 12 O -0.59 -31.42 16.43 -3.03 -0.05 -31.47 16 13 C 0.10 3.11 6.18 85.63 0.53 3.63 16 14 N -0.57 -17.56 2.10 -777.27 -1.63 -19.19 16 15 C 0.71 21.82 8.32 179.38 1.49 23.31 16 16 O -0.57 -21.42 17.49 -3.83 -0.07 -21.49 16 17 N -0.70 -15.51 5.04 -445.88 -2.25 -17.76 16 18 C 0.18 3.95 0.87 1.85 0.00 3.95 16 19 C -0.11 -1.34 5.09 30.51 0.16 -1.19 16 20 C -0.13 -1.51 5.95 30.63 0.18 -1.33 16 21 C -0.08 -0.82 5.67 29.72 0.17 -0.66 16 22 C -0.05 -0.92 5.74 -19.85 -0.11 -1.03 16 23 C -0.13 -2.07 9.61 22.35 0.21 -1.85 16 24 C -0.10 -2.03 10.05 22.21 0.22 -1.81 16 25 C -0.14 -3.83 10.05 22.20 0.22 -3.61 16 26 C -0.11 -3.37 9.12 22.35 0.20 -3.17 16 27 C -0.11 -2.68 4.93 -19.95 -0.10 -2.78 16 28 C 0.53 15.80 6.62 87.81 0.58 16.39 16 29 O -0.48 -16.06 16.01 -2.88 -0.05 -16.10 16 30 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 31 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 32 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 33 H 0.41 14.52 8.32 -92.71 -0.77 13.74 16 34 H 0.15 3.71 7.87 -2.39 -0.02 3.70 16 35 H 0.15 3.59 8.01 -2.39 -0.02 3.57 16 36 H 0.45 7.44 8.96 -92.71 -0.83 6.61 16 37 H 0.09 1.00 8.09 -2.39 -0.02 0.98 16 38 H 0.12 0.85 8.11 -2.39 -0.02 0.83 16 39 H 0.06 1.08 6.12 -2.39 -0.01 1.06 16 40 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.09 0.79 8.12 -2.38 -0.02 0.77 16 42 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.16 1.49 8.05 -2.91 -0.02 1.47 16 44 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 45 H 0.12 3.14 8.06 -2.91 -0.02 3.12 16 46 H 0.09 3.20 7.33 -2.91 -0.02 3.18 16 Total: -1.00 -87.67 386.60 0.75 -86.92 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: -0.55 Total: 27.80 kcal Atomic # 6 Polarization: 31.23 SS G_CDS: 5.62 Total: 36.85 kcal Atomic # 7 Polarization: -121.38 SS G_CDS: -6.18 Total: -127.57 kcal Atomic # 8 Polarization: -68.90 SS G_CDS: -0.16 Total: -69.06 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -87.67 0.75 -86.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031630771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.873 kcal (2) G-P(sol) polarization free energy of solvation -87.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds