Wall clock time and date at job start Tue Mar 31 2020 05:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38277 * 119.96395 * 2 1 4 4 C 1.38280 * 120.14635 * 180.02562 * 3 2 1 5 5 C 1.50695 * 119.97054 * 179.97438 * 4 3 2 6 6 C 1.38121 * 120.06713 * 359.96521 * 4 3 2 7 7 C 1.38872 * 119.92790 * 0.02562 * 6 4 3 8 8 N 1.39924 * 120.07172 * 180.02562 * 7 6 4 9 9 C 1.46494 * 119.99933 * 292.12703 * 8 7 6 10 10 C 1.50701 * 109.47406 * 269.99810 * 9 8 7 11 11 H 1.08000 * 119.99457 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00039 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00317 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99829 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.46825 * 89.99806 * 14 12 10 16 16 H 1.48496 * 109.46922 * 209.99996 * 14 12 10 17 17 H 1.48500 * 109.47225 * 329.99917 * 14 12 10 18 18 C 1.34783 * 119.99824 * 112.12629 * 8 7 6 19 19 O 1.21283 * 119.99838 * 355.26627 * 18 8 7 20 20 C 1.50696 * 119.99921 * 175.26947 * 18 8 7 21 21 O 1.45201 * 109.47245 * 180.02562 * 20 18 8 22 22 C 1.34757 * 116.99951 * 180.02562 * 21 20 18 23 23 O 1.21517 * 119.99997 * 359.97438 * 22 21 20 24 24 C 1.47289 * 119.99699 * 179.97438 * 22 21 20 25 25 C 1.41341 * 126.42544 * 0.04156 * 24 22 21 26 26 N 1.30430 * 108.00977 * 179.68425 * 25 24 22 27 27 N 1.39928 * 108.92021 * 0.44110 * 26 25 24 28 28 H 0.96996 * 125.75016 * 179.81703 * 27 26 25 29 29 C 1.34226 * 108.51080 * 359.54513 * 27 26 25 30 30 C 1.38117 * 119.96545 * 180.24740 * 2 1 3 31 31 H 1.08991 * 109.47627 * 89.99603 * 1 2 3 32 32 H 1.09008 * 109.46774 * 209.99662 * 1 2 3 33 33 H 1.09002 * 109.46972 * 329.98644 * 1 2 3 34 34 H 1.08003 * 119.93281 * 359.97438 * 3 2 1 35 35 H 1.09007 * 109.46885 * 269.98456 * 5 4 3 36 36 H 1.08996 * 109.46920 * 29.97630 * 5 4 3 37 37 H 1.08998 * 109.47719 * 149.98273 * 5 4 3 38 38 H 1.07995 * 120.03765 * 179.97438 * 6 4 3 39 39 H 1.09003 * 109.47180 * 30.00046 * 9 8 7 40 40 H 1.09009 * 109.47164 * 149.99873 * 9 8 7 41 41 H 0.96991 * 120.00284 * 180.02562 * 13 12 10 42 42 H 1.08999 * 109.47338 * 59.99680 * 20 18 8 43 43 H 1.09001 * 109.47063 * 300.00373 * 20 18 8 44 44 H 1.07994 * 125.99776 * 359.95664 * 25 24 22 45 45 H 1.08009 * 126.29586 * 180.23906 * 29 27 26 46 46 H 1.07999 * 120.03635 * 0.03104 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1979 0.0000 4 6 3.5804 1.2024 -0.0005 5 6 4.3291 2.5102 -0.0011 6 6 4.2762 0.0092 -0.0003 7 6 3.5856 -1.1956 -0.0002 8 7 4.2875 -2.4061 0.0006 9 6 5.0687 -2.8005 -1.1742 10 6 4.1983 -3.5962 -2.1124 11 1 3.1664 -3.7891 -1.8587 12 6 4.7195 -4.0786 -3.2942 13 7 5.9762 -3.8441 -3.6029 14 14 3.6407 -5.0656 -4.4568 15 1 2.9749 -4.1464 -5.4144 16 1 4.4783 -6.0375 -5.2043 17 1 2.6112 -5.7973 -3.6757 18 6 4.2447 -3.2092 1.0822 19 8 3.6695 -2.8446 2.0858 20 6 4.9117 -4.5600 1.0445 21 8 4.7255 -5.2275 2.3204 22 6 5.2656 -6.4549 2.4533 23 8 5.8751 -6.9539 1.5280 24 6 5.1171 -7.1916 3.7201 25 6 4.4393 -6.7440 4.8767 26 7 4.5237 -7.6800 5.7812 27 7 5.2570 -8.7510 5.2586 28 1 5.4685 -9.5744 5.7257 29 6 5.6133 -8.4498 4.0001 30 6 2.1969 -1.1965 -0.0052 31 1 -0.3634 0.0001 -1.0275 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3633 0.8899 0.5141 34 1 1.6559 2.1323 -0.0004 35 1 4.5094 2.8251 -1.0290 36 1 3.7372 3.2678 0.5124 37 1 5.2820 2.3837 0.5126 38 1 5.3562 0.0132 -0.0012 39 1 5.4328 -1.9088 -1.6846 40 1 5.9157 -3.4102 -0.8594 41 1 6.3428 -4.1832 -4.4344 42 1 5.9771 -4.4339 0.8521 43 1 4.4681 -5.1622 0.2516 44 1 3.9357 -5.7954 4.9902 45 1 6.1837 -9.0759 3.3299 46 1 1.6569 -2.1318 -0.0097 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032934807.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:02 Heat of formation + Delta-G solvation = -21.149774 kcal Electronic energy + Delta-G solvation = -31077.445239 eV Core-core repulsion = 26740.933579 eV Total energy + Delta-G solvation = -4336.511660 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.55137 -40.18738 -39.55300 -38.22522 -36.02225 -35.20304 -33.23159 -32.79551 -32.12660 -30.95338 -30.57012 -28.12980 -27.36267 -26.78059 -26.36944 -23.87709 -23.06794 -22.09662 -21.88243 -20.37171 -20.20598 -18.93540 -18.62749 -16.90436 -16.80991 -16.37767 -16.17625 -16.11347 -15.66489 -15.35230 -15.24346 -14.90285 -14.73692 -14.40754 -13.95524 -13.72387 -13.55314 -13.15578 -13.02014 -13.01846 -12.66430 -12.57849 -12.35990 -12.32403 -12.17545 -11.78723 -11.66149 -11.37701 -11.25588 -11.19359 -11.00706 -10.83465 -10.74428 -10.35681 -10.29373 -10.23537 -10.10788 -9.88493 -9.27950 -9.13164 -8.61661 -8.55447 -8.16488 -7.71227 -6.23608 -4.31840 1.21210 1.71822 1.77836 1.93952 2.32409 2.77072 3.11045 3.22332 3.23338 3.29473 3.32906 3.82335 4.10239 4.30979 4.55214 4.61013 4.92971 5.04345 5.09206 5.11840 5.13340 5.16622 5.44695 5.48283 5.49849 5.55727 5.62702 5.75063 5.75933 5.82637 5.84525 5.90598 6.02264 6.05062 6.15717 6.22169 6.48693 6.62446 6.66299 6.76861 6.84899 6.90363 6.96040 7.08289 7.21208 7.22264 7.58014 7.70789 7.93936 7.99308 8.06278 8.67341 8.81820 9.36494 10.83512 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.007478 B = 0.003279 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3743.339080 B = 8537.175219 C =10946.642305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.079 4.079 3 C -0.132 4.132 4 C -0.080 4.080 5 C -0.109 4.109 6 C -0.127 4.127 7 C 0.184 3.816 8 N -0.557 5.557 9 C 0.235 3.765 10 C -0.544 4.544 11 H 0.063 0.937 12 C 0.069 3.931 13 N -0.888 5.888 14 Si 0.898 3.102 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.272 1.272 18 C 0.525 3.475 19 O -0.537 6.537 20 C 0.060 3.940 21 O -0.333 6.333 22 C 0.540 3.460 23 O -0.513 6.513 24 C -0.273 4.273 25 C 0.110 3.890 26 N -0.301 5.301 27 N -0.463 5.463 28 H 0.446 0.554 29 C 0.141 3.859 30 C -0.109 4.109 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.117 0.883 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.122 0.878 39 H 0.044 0.956 40 H 0.043 0.957 41 H 0.267 0.733 42 H 0.102 0.898 43 H 0.117 0.883 44 H 0.202 0.798 45 H 0.196 0.804 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.203 -0.456 11.803 12.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.080 4.080 3 C -0.151 4.151 4 C -0.080 4.080 5 C -0.165 4.165 6 C -0.146 4.146 7 C 0.093 3.907 8 N -0.286 5.286 9 C 0.117 3.883 10 C -0.582 4.582 11 H 0.081 0.919 12 C -0.134 4.134 13 N -0.525 5.525 14 Si 0.725 3.275 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.197 1.197 18 C 0.313 3.687 19 O -0.415 6.415 20 C -0.016 4.016 21 O -0.248 6.248 22 C 0.385 3.615 23 O -0.402 6.402 24 C -0.287 4.287 25 C -0.078 4.078 26 N -0.122 5.122 27 N -0.168 5.168 28 H 0.291 0.709 29 C -0.012 4.012 30 C -0.129 4.129 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.135 0.865 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.140 0.860 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.120 0.880 43 H 0.135 0.865 44 H 0.219 0.781 45 H 0.213 0.787 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.474 -0.783 13.084 13.338 hybrid contribution 0.039 -0.895 -1.818 2.027 sum -2.436 -1.678 11.266 11.648 Atomic orbital electron populations 1.20739 0.91406 1.02383 1.02077 1.19675 0.95757 0.92692 0.99836 1.20746 0.93359 0.97109 1.03837 1.19634 0.93680 0.94662 1.00052 1.20732 0.99749 0.93941 1.02120 1.21035 0.99874 0.91073 1.02640 1.17429 0.90422 0.85285 0.97592 1.45788 1.48852 1.17154 1.16794 1.19671 0.90690 0.96988 0.80973 1.21406 0.97894 1.34719 1.04205 0.91858 1.24909 0.95072 0.95852 0.97611 1.69904 1.12986 1.45104 1.24515 0.86491 0.80348 0.79870 0.80819 1.20425 1.20928 1.19654 1.19907 0.80647 0.85293 0.82865 1.90674 1.44458 1.74712 1.31615 1.22787 1.02935 0.92182 0.83725 1.86483 1.70807 1.29667 1.37875 1.19912 0.75659 0.79557 0.86418 1.90885 1.39931 1.68512 1.40865 1.19393 1.16017 0.97441 0.95799 1.24380 0.95570 0.98624 0.89248 1.77237 1.15995 0.96278 1.22675 1.46240 1.42193 1.17567 1.10823 0.70917 1.23045 0.95534 0.95565 0.87090 1.21075 0.93239 0.97796 1.00775 0.91345 0.91683 0.91860 0.86531 0.91313 0.91869 0.91731 0.86048 0.93822 0.93949 0.92336 0.88014 0.86489 0.78135 0.78719 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 36.01 0.36 -1.01 16 2 C -0.08 -1.27 5.88 -104.65 -0.62 -1.89 16 3 C -0.13 -1.97 9.35 -39.55 -0.37 -2.34 16 4 C -0.08 -1.24 5.88 -104.65 -0.62 -1.85 16 5 C -0.11 -1.28 10.01 36.00 0.36 -0.92 16 6 C -0.13 -2.30 9.34 -39.39 -0.37 -2.67 16 7 C 0.18 3.74 4.75 -83.69 -0.40 3.34 16 8 N -0.56 -11.94 2.51 -114.74 -0.29 -12.23 16 9 C 0.24 5.51 4.88 -5.20 -0.03 5.49 16 10 C -0.54 -13.96 9.16 -34.44 -0.32 -14.28 16 11 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 12 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 13 N -0.89 -24.22 13.29 55.43 0.74 -23.49 16 14 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 C 0.52 11.12 7.61 -10.98 -0.08 11.04 16 19 O -0.54 -12.28 16.27 -14.10 -0.23 -12.51 16 20 C 0.06 1.17 4.62 36.00 0.17 1.33 16 21 O -0.33 -6.03 9.60 -47.33 -0.45 -6.48 16 22 C 0.54 8.92 7.95 34.41 0.27 9.19 16 23 O -0.51 -9.58 16.69 -19.28 -0.32 -9.90 16 24 C -0.27 -3.55 6.13 -105.08 -0.64 -4.19 16 25 C 0.11 1.33 11.87 -16.97 -0.20 1.13 16 26 N -0.30 -3.43 12.63 30.87 0.39 -3.04 16 27 N -0.46 -3.77 7.28 30.86 0.22 -3.54 16 28 H 0.45 1.83 8.96 -182.73 -1.64 0.20 16 29 C 0.14 1.31 11.82 -16.55 -0.20 1.12 16 30 C -0.11 -2.10 9.21 -39.39 -0.36 -2.46 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.80 8.09 -51.92 -0.42 0.38 16 33 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 34 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 35 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 36 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 37 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 38 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 39 H 0.04 1.08 7.86 -51.93 -0.41 0.67 16 40 H 0.04 1.01 6.47 -51.92 -0.34 0.67 16 41 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.10 1.90 7.25 -51.93 -0.38 1.52 16 43 H 0.12 2.38 7.91 -51.93 -0.41 1.97 16 44 H 0.20 2.20 8.06 -52.49 -0.42 1.78 16 45 H 0.20 1.25 8.06 -52.48 -0.42 0.83 16 46 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 406.53 15.07 6.13 6.13 Total: -1.00 -33.34 406.53 -9.32 -42.66 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -7.35 Total: 4.08 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -3.13 Total: 2.76 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 1.06 Total: -42.29 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -1.01 Total: -28.89 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.34 -9.32 -42.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032934807.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.513 kcal (2) G-P(sol) polarization free energy of solvation -33.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds