Wall clock time and date at job start Tue Mar 31 2020 05:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38277 * 119.96395 * 2 1 4 4 C 1.38280 * 120.14635 * 180.02562 * 3 2 1 5 5 C 1.50695 * 119.97054 * 179.97438 * 4 3 2 6 6 C 1.38121 * 120.06713 * 359.96521 * 4 3 2 7 7 C 1.38872 * 119.92790 * 0.02562 * 6 4 3 8 8 N 1.39924 * 120.07172 * 180.02562 * 7 6 4 9 9 C 1.46494 * 119.99933 * 292.12703 * 8 7 6 10 10 C 1.50701 * 109.47406 * 269.99810 * 9 8 7 11 11 H 1.08000 * 119.99457 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00039 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00317 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99829 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.46825 * 89.99806 * 14 12 10 16 16 H 1.48496 * 109.46922 * 209.99996 * 14 12 10 17 17 H 1.48500 * 109.47225 * 329.99917 * 14 12 10 18 18 C 1.34783 * 119.99824 * 112.12629 * 8 7 6 19 19 O 1.21283 * 119.99838 * 355.26627 * 18 8 7 20 20 C 1.50696 * 119.99921 * 175.26947 * 18 8 7 21 21 O 1.45201 * 109.47245 * 180.02562 * 20 18 8 22 22 C 1.34757 * 116.99951 * 180.02562 * 21 20 18 23 23 O 1.21517 * 119.99997 * 359.97438 * 22 21 20 24 24 C 1.47289 * 119.99699 * 179.97438 * 22 21 20 25 25 C 1.41341 * 126.42544 * 0.04156 * 24 22 21 26 26 N 1.30430 * 108.00977 * 179.68425 * 25 24 22 27 27 N 1.39928 * 108.92021 * 0.44110 * 26 25 24 28 28 H 0.96996 * 125.75016 * 179.81703 * 27 26 25 29 29 C 1.34226 * 108.51080 * 359.54513 * 27 26 25 30 30 C 1.38117 * 119.96545 * 180.24740 * 2 1 3 31 31 H 1.08991 * 109.47627 * 89.99603 * 1 2 3 32 32 H 1.09008 * 109.46774 * 209.99662 * 1 2 3 33 33 H 1.09002 * 109.46972 * 329.98644 * 1 2 3 34 34 H 1.08003 * 119.93281 * 359.97438 * 3 2 1 35 35 H 1.09007 * 109.46885 * 269.98456 * 5 4 3 36 36 H 1.08996 * 109.46920 * 29.97630 * 5 4 3 37 37 H 1.08998 * 109.47719 * 149.98273 * 5 4 3 38 38 H 1.07995 * 120.03765 * 179.97438 * 6 4 3 39 39 H 1.09003 * 109.47180 * 30.00046 * 9 8 7 40 40 H 1.09009 * 109.47164 * 149.99873 * 9 8 7 41 41 H 0.96991 * 120.00284 * 180.02562 * 13 12 10 42 42 H 1.08999 * 109.47338 * 59.99680 * 20 18 8 43 43 H 1.09001 * 109.47063 * 300.00373 * 20 18 8 44 44 H 1.07994 * 125.99776 * 359.95664 * 25 24 22 45 45 H 1.08009 * 126.29586 * 180.23906 * 29 27 26 46 46 H 1.07999 * 120.03635 * 0.03104 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1979 0.0000 4 6 3.5804 1.2024 -0.0005 5 6 4.3291 2.5102 -0.0011 6 6 4.2762 0.0092 -0.0003 7 6 3.5856 -1.1956 -0.0002 8 7 4.2875 -2.4061 0.0006 9 6 5.0687 -2.8005 -1.1742 10 6 4.1983 -3.5962 -2.1124 11 1 3.1664 -3.7891 -1.8587 12 6 4.7195 -4.0786 -3.2942 13 7 5.9762 -3.8441 -3.6029 14 14 3.6407 -5.0656 -4.4568 15 1 2.9749 -4.1464 -5.4144 16 1 4.4783 -6.0375 -5.2043 17 1 2.6112 -5.7973 -3.6757 18 6 4.2447 -3.2092 1.0822 19 8 3.6695 -2.8446 2.0858 20 6 4.9117 -4.5600 1.0445 21 8 4.7255 -5.2275 2.3204 22 6 5.2656 -6.4549 2.4533 23 8 5.8751 -6.9539 1.5280 24 6 5.1171 -7.1916 3.7201 25 6 4.4393 -6.7440 4.8767 26 7 4.5237 -7.6800 5.7812 27 7 5.2570 -8.7510 5.2586 28 1 5.4685 -9.5744 5.7257 29 6 5.6133 -8.4498 4.0001 30 6 2.1969 -1.1965 -0.0052 31 1 -0.3634 0.0001 -1.0275 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3633 0.8899 0.5141 34 1 1.6559 2.1323 -0.0004 35 1 4.5094 2.8251 -1.0290 36 1 3.7372 3.2678 0.5124 37 1 5.2820 2.3837 0.5126 38 1 5.3562 0.0132 -0.0012 39 1 5.4328 -1.9088 -1.6846 40 1 5.9157 -3.4102 -0.8594 41 1 6.3428 -4.1832 -4.4344 42 1 5.9771 -4.4339 0.8521 43 1 4.4681 -5.1622 0.2516 44 1 3.9357 -5.7954 4.9902 45 1 6.1837 -9.0759 3.3299 46 1 1.6569 -2.1318 -0.0097 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032934807.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:01 Heat of formation + Delta-G solvation = -39.351681 kcal Electronic energy + Delta-G solvation = -31078.234533 eV Core-core repulsion = 26740.933579 eV Total energy + Delta-G solvation = -4337.300953 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.47550 -41.70773 -40.90873 -39.67627 -37.45971 -36.92542 -34.73555 -34.39820 -33.02163 -32.34626 -31.60288 -29.66550 -29.07442 -27.98355 -27.60751 -25.10543 -24.93849 -23.27590 -22.98691 -21.61270 -21.32063 -20.27845 -19.87660 -18.77369 -18.25328 -17.93454 -17.67619 -17.58297 -17.02228 -16.78918 -16.65762 -16.19307 -15.91394 -15.57713 -15.37628 -14.98419 -14.78074 -14.44167 -14.37708 -14.07047 -13.97489 -13.92477 -13.88707 -13.75564 -13.51766 -13.29490 -13.07576 -12.82108 -12.71149 -12.44671 -12.42944 -12.39835 -12.10061 -12.01515 -11.89235 -11.75956 -11.53458 -11.01104 -10.93767 -10.63727 -10.12684 -10.06913 -9.46644 -9.25821 -8.26008 -6.40982 0.27303 0.35121 0.44996 0.94816 1.17071 1.38527 1.39475 1.43307 1.50961 1.80102 2.08156 2.28508 2.40908 2.77013 3.05341 3.45551 3.57104 3.84061 3.88192 3.92929 3.93393 4.01368 4.16602 4.19138 4.29067 4.32339 4.46248 4.48339 4.60509 4.71373 4.77427 4.84600 4.90051 4.92637 5.00168 5.07109 5.14862 5.20062 5.31898 5.36717 5.48405 5.54814 5.63783 5.69177 5.77081 5.94939 6.13304 6.14264 6.29754 6.37098 6.67133 6.70555 7.07088 7.31007 8.80289 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.007478 B = 0.003279 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3743.339080 B = 8537.175219 C =10946.642305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.079 4.079 3 C -0.127 4.127 4 C -0.076 4.076 5 C -0.106 4.106 6 C -0.148 4.148 7 C 0.145 3.855 8 N -0.555 5.555 9 C 0.251 3.749 10 C -0.551 4.551 11 H 0.053 0.947 12 C 0.027 3.973 13 N -0.915 5.915 14 Si 0.955 3.045 15 H -0.273 1.273 16 H -0.278 1.278 17 H -0.271 1.271 18 C 0.523 3.477 19 O -0.557 6.557 20 C 0.070 3.930 21 O -0.340 6.340 22 C 0.540 3.460 23 O -0.541 6.541 24 C -0.310 4.310 25 C 0.106 3.894 26 N -0.316 5.316 27 N -0.440 5.440 28 H 0.466 0.534 29 C 0.173 3.827 30 C -0.138 4.138 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.158 0.842 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.119 0.881 39 H 0.027 0.973 40 H 0.036 0.964 41 H 0.270 0.730 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.203 0.797 45 H 0.229 0.771 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.160 0.016 12.292 12.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.080 4.080 3 C -0.145 4.145 4 C -0.077 4.077 5 C -0.163 4.163 6 C -0.168 4.168 7 C 0.055 3.945 8 N -0.283 5.283 9 C 0.132 3.868 10 C -0.589 4.589 11 H 0.072 0.928 12 C -0.174 4.174 13 N -0.554 5.554 14 Si 0.780 3.220 15 H -0.198 1.198 16 H -0.203 1.203 17 H -0.195 1.195 18 C 0.312 3.688 19 O -0.436 6.436 20 C -0.007 4.007 21 O -0.255 6.255 22 C 0.387 3.613 23 O -0.433 6.433 24 C -0.323 4.323 25 C -0.082 4.082 26 N -0.137 5.137 27 N -0.146 5.146 28 H 0.315 0.685 29 C 0.017 3.983 30 C -0.157 4.157 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.175 0.825 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.137 0.863 39 H 0.045 0.955 40 H 0.054 0.946 41 H 0.079 0.921 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.219 0.781 45 H 0.245 0.755 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.442 -0.322 13.615 14.047 hybrid contribution 0.331 -1.033 -1.880 2.171 sum -3.111 -1.355 11.734 12.215 Atomic orbital electron populations 1.20808 0.88725 1.03663 1.03155 1.20128 0.97771 0.91974 0.98104 1.21230 0.93254 0.98164 1.01842 1.20132 0.94463 0.95221 0.97854 1.20812 0.99902 0.92300 1.03266 1.21199 1.00031 0.91593 1.03958 1.17826 0.91216 0.85351 1.00129 1.45691 1.48608 1.17956 1.16043 1.19307 0.90433 0.95730 0.81318 1.21563 0.97641 1.34901 1.04844 0.92824 1.25608 0.96172 0.96704 0.98947 1.69988 1.14242 1.46040 1.25103 0.85594 0.78831 0.78659 0.78930 1.19819 1.20272 1.19535 1.20152 0.80374 0.85737 0.82530 1.90637 1.45495 1.75314 1.32164 1.22531 1.02632 0.91250 0.84294 1.86508 1.71389 1.30797 1.36852 1.20499 0.74686 0.78756 0.87364 1.90858 1.41445 1.68843 1.42123 1.19374 1.19127 0.99112 0.94715 1.24433 0.95570 0.99050 0.89127 1.77203 1.16769 0.96881 1.22809 1.46269 1.40451 1.17527 1.10403 0.68458 1.23470 0.93402 0.94134 0.87290 1.21128 0.92960 0.98600 1.03062 0.90208 0.92026 0.88999 0.82474 0.90176 0.89204 0.91405 0.86308 0.95469 0.94603 0.92093 0.87732 0.87788 0.78075 0.75453 0.88060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.46 10.01 71.24 0.71 -1.75 16 2 C -0.08 -2.48 5.88 -19.88 -0.12 -2.59 16 3 C -0.13 -3.47 9.35 22.29 0.21 -3.27 16 4 C -0.08 -2.26 5.88 -19.88 -0.12 -2.37 16 5 C -0.11 -2.21 10.01 71.23 0.71 -1.50 16 6 C -0.15 -5.53 9.34 22.39 0.21 -5.33 16 7 C 0.14 6.18 4.75 38.15 0.18 6.36 16 8 N -0.55 -25.29 2.51 -635.30 -1.59 -26.88 16 9 C 0.25 12.47 4.88 85.63 0.42 12.89 16 10 C -0.55 -29.41 9.16 25.60 0.23 -29.18 16 11 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 12 C 0.03 1.44 5.46 84.65 0.46 1.90 16 13 N -0.92 -50.96 13.29 21.45 0.28 -50.67 16 14 Si 0.95 42.64 29.54 68.60 2.03 44.67 16 15 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 18 C 0.52 23.58 7.61 87.65 0.67 24.25 16 19 O -0.56 -26.82 16.27 15.76 0.26 -26.57 16 20 C 0.07 2.89 4.62 71.23 0.33 3.22 16 21 O -0.34 -12.97 9.60 -50.29 -0.48 -13.46 16 22 C 0.54 18.39 7.95 70.20 0.56 18.95 16 23 O -0.54 -20.78 16.69 19.78 0.33 -20.44 16 24 C -0.31 -7.95 6.13 -20.16 -0.12 -8.08 16 25 C 0.11 2.56 11.87 85.66 1.02 3.58 16 26 N -0.32 -6.78 12.63 -56.25 -0.71 -7.49 16 27 N -0.44 -6.07 7.28 -56.28 -0.41 -6.48 16 28 H 0.47 2.38 8.96 -213.44 -1.91 0.46 16 29 C 0.17 2.85 11.82 84.30 1.00 3.85 16 30 C -0.14 -5.49 9.21 22.39 0.21 -5.28 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 1.46 8.09 -2.38 -0.02 1.44 16 33 H 0.09 1.60 8.09 -2.39 -0.02 1.58 16 34 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 35 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.09 1.42 8.08 -2.39 -0.02 1.40 16 37 H 0.07 1.38 8.08 -2.39 -0.02 1.36 16 38 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 39 H 0.03 1.43 7.86 -2.39 -0.02 1.41 16 40 H 0.04 1.81 6.47 -2.38 -0.02 1.80 16 41 H 0.27 14.21 8.31 -92.72 -0.77 13.44 16 42 H 0.10 4.19 7.25 -2.39 -0.02 4.18 16 43 H 0.10 4.54 7.91 -2.39 -0.02 4.52 16 44 H 0.20 4.59 8.06 -2.91 -0.02 4.57 16 45 H 0.23 2.20 8.06 -2.91 -0.02 2.18 16 46 H 0.10 4.25 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -74.91 406.53 5.37 -69.54 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -0.89 Total: 22.14 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 6.56 Total: 15.65 kcal Atomic # 7 Polarization: -89.10 SS G_CDS: -2.43 Total: -91.52 kcal Atomic # 8 Polarization: -60.57 SS G_CDS: 0.10 Total: -60.47 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -74.91 5.37 -69.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032934807.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.187 kcal (2) G-P(sol) polarization free energy of solvation -74.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds