Wall clock time and date at job start Tue Mar 31 2020 05:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35911 * 117.00506 * 2 1 4 4 C 1.38857 * 119.98230 * 0.02562 * 3 2 1 5 5 C 1.38236 * 120.23850 * 179.97438 * 4 3 2 6 6 C 1.38007 * 120.21014 * 359.76598 * 5 4 3 7 7 C 1.39558 * 119.96072 * 0.51056 * 6 5 4 8 8 C 1.47861 * 120.11843 * 179.74449 * 7 6 5 9 9 O 1.21552 * 120.00337 * 146.77032 * 8 7 6 10 10 N 1.34777 * 119.99785 * 326.76405 * 8 7 6 11 11 C 1.47084 * 120.88299 * 354.75488 * 10 8 7 12 12 C 1.53233 * 108.52063 * 231.20410 * 11 10 8 13 13 N 1.46896 * 109.34115 * 306.16651 * 12 11 10 14 14 C 1.46904 * 111.00271 * 187.25296 * 13 12 11 15 15 C 1.52997 * 109.47043 * 170.00015 * 14 13 12 16 16 H 1.08996 * 109.47317 * 55.00350 * 15 14 13 17 17 C 1.47201 * 109.47318 * 294.99787 * 15 14 13 18 18 N 9.06975 * 145.79319 * 29.99929 * 5 1 2 19 19 C 1.53009 * 109.46892 * 175.00404 * 15 14 13 20 20 C 1.50696 * 109.46986 * 185.00056 * 19 15 14 21 21 H 1.08000 * 119.99946 * 359.97438 * 20 19 15 22 22 C 1.37876 * 119.99978 * 179.72162 * 20 19 15 23 23 N 1.31520 * 120.00068 * 0.27430 * 22 20 19 24 24 Si 1.86801 * 120.00247 * 180.27636 * 22 20 19 25 25 H 1.48505 * 109.47014 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47470 * 119.99821 * 24 22 20 27 27 H 1.48503 * 109.47182 * 240.00329 * 24 22 20 28 28 C 1.46905 * 111.27022 * 63.10747 * 13 12 11 29 29 C 1.47081 * 120.88049 * 174.77312 * 10 8 7 30 30 C 1.38445 * 119.98993 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.47449 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46998 * 300.00132 * 1 2 3 33 33 H 1.09003 * 109.47359 * 59.99694 * 1 2 3 34 34 H 1.08006 * 119.88027 * 359.97438 * 4 3 2 35 35 H 1.08003 * 119.89668 * 180.02562 * 5 4 3 36 36 H 1.08002 * 120.01778 * 180.25556 * 6 5 4 37 37 H 1.08993 * 109.63251 * 111.49166 * 11 10 8 38 38 H 1.09004 * 109.62453 * 350.90864 * 11 10 8 39 39 H 1.09005 * 109.49822 * 186.20652 * 12 11 10 40 40 H 1.09000 * 109.49848 * 66.12874 * 12 11 10 41 41 H 1.09003 * 109.46823 * 50.00084 * 14 13 12 42 42 H 1.09004 * 109.47399 * 290.00345 * 14 13 12 43 43 H 1.08991 * 109.47127 * 64.99807 * 19 15 14 44 44 H 1.09006 * 109.46567 * 304.99564 * 19 15 14 45 45 H 0.96997 * 120.00137 * 180.02562 * 23 22 20 46 46 H 1.09003 * 109.48971 * 56.85701 * 28 13 12 47 47 H 1.08999 * 109.49186 * 176.93727 * 28 13 12 48 48 H 1.09008 * 109.62881 * 248.50146 * 29 10 8 49 49 H 1.08990 * 109.63310 * 8.89140 * 29 10 8 50 50 H 1.08005 * 120.10290 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2896 2.3753 0.0005 5 6 1.9117 3.6097 0.0011 6 6 3.2893 3.6931 0.0060 7 6 4.0580 2.5283 -0.0004 8 6 5.5341 2.6135 -0.0009 9 8 6.1921 1.7666 0.5712 10 7 6.1502 3.6303 -0.6359 11 6 5.3815 4.6009 -1.4299 12 6 6.0235 4.7126 -2.8167 13 7 7.4514 5.0238 -2.6681 14 6 8.0667 5.3084 -3.9714 15 6 9.4753 5.8667 -3.7594 16 1 10.0529 5.1731 -3.1484 17 6 9.3898 7.1680 -3.0766 18 7 9.3245 8.1724 -2.5469 19 6 10.1621 6.0462 -5.1148 20 6 11.5897 6.4789 -4.9011 21 1 11.9691 6.6130 -3.8989 22 6 12.4130 6.6987 -5.9850 23 7 11.9509 6.5358 -7.2056 24 14 14.1849 7.2276 -5.7201 25 1 14.4556 7.3396 -4.2642 26 1 15.0971 6.2195 -6.3175 27 1 14.4104 8.5448 -6.3677 28 6 8.1634 3.9417 -1.9751 29 6 7.6090 3.7984 -0.5537 30 6 3.4286 1.2830 -0.0005 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 0.2111 2.3163 0.0005 35 1 1.3179 4.5119 0.0019 36 1 3.7721 4.6591 0.0105 37 1 5.4008 5.5734 -0.9381 38 1 4.3515 4.2583 -1.5298 39 1 5.5350 5.5070 -3.3810 40 1 5.9107 3.7670 -3.3471 41 1 7.4622 6.0410 -4.5063 42 1 8.1241 4.3894 -4.5547 43 1 9.6347 6.8058 -5.6916 44 1 10.1463 5.1013 -5.6580 45 1 12.5303 6.6901 -7.9681 46 1 8.0207 3.0069 -2.5172 47 1 9.2267 4.1772 -1.9288 48 1 7.8425 4.6939 0.0223 49 1 8.0514 2.9270 -0.0712 50 1 4.0183 0.3781 -0.0005 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040497401.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:41 Heat of formation + Delta-G solvation = 0.778781 kcal Electronic energy + Delta-G solvation = -31031.224522 eV Core-core repulsion = 26831.496851 eV Total energy + Delta-G solvation = -4199.727671 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.07299 -40.04299 -38.53898 -37.47544 -36.44240 -34.73136 -33.49262 -32.05105 -31.67033 -31.46893 -30.29621 -28.24288 -27.78374 -26.03197 -24.53800 -23.65957 -22.94745 -22.55251 -21.70178 -21.19009 -19.74856 -18.39806 -17.20797 -16.78035 -16.75656 -16.49370 -16.24931 -16.12177 -16.03563 -15.52586 -15.17755 -14.80497 -14.76485 -14.46104 -14.35424 -14.00574 -13.92039 -13.58534 -13.30017 -12.96177 -12.84061 -12.71007 -12.64880 -12.39130 -12.06624 -11.98035 -11.83298 -11.58059 -11.48485 -11.39357 -11.29425 -11.22172 -11.19587 -11.07630 -10.69333 -10.52929 -10.24480 -10.05175 -9.57965 -9.46975 -9.25620 -8.93479 -8.66832 -8.48218 -8.28661 -6.11978 -4.15141 0.46795 0.93961 2.43405 2.59251 2.92044 3.27320 3.34987 3.35761 3.40283 3.67811 3.77994 3.87432 4.09772 4.28686 4.39574 4.51470 4.57290 4.60428 4.65840 4.79330 4.81520 4.84948 4.91495 4.99025 5.00688 5.05076 5.07759 5.22171 5.26395 5.33236 5.46732 5.50804 5.59608 5.62905 5.64970 5.74344 5.77142 5.86646 5.89506 5.92039 5.99370 6.10955 6.27275 6.30885 6.45277 6.88445 6.97424 7.02515 7.17585 7.39366 7.49149 7.83355 7.88815 8.20339 8.55414 8.89816 9.50695 10.98890 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.022981 B = 0.001770 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.121291 B =15811.679208 C =15850.119920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.121 3.879 4 C -0.188 4.188 5 C -0.086 4.086 6 C -0.132 4.132 7 C -0.089 4.089 8 C 0.560 3.440 9 O -0.534 6.534 10 N -0.604 5.604 11 C 0.096 3.904 12 C 0.041 3.959 13 N -0.541 5.541 14 C 0.063 3.937 15 C 0.010 3.990 16 H 0.100 0.900 17 C 0.256 3.744 18 N -0.479 5.479 19 C 0.031 3.969 20 C -0.526 4.526 21 H 0.057 0.943 22 C 0.062 3.938 23 N -0.891 5.891 24 Si 0.891 3.109 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.284 1.284 28 C 0.036 3.964 29 C 0.117 3.883 30 C -0.096 4.096 31 H 0.101 0.899 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.140 0.860 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.040 0.960 41 H 0.082 0.918 42 H 0.055 0.945 43 H 0.026 0.974 44 H 0.037 0.963 45 H 0.262 0.738 46 H 0.043 0.957 47 H 0.098 0.902 48 H 0.078 0.922 49 H 0.097 0.903 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.740 -11.258 12.372 30.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.076 3.924 4 C -0.206 4.206 5 C -0.104 4.104 6 C -0.150 4.150 7 C -0.092 4.092 8 C 0.349 3.651 9 O -0.412 6.412 10 N -0.337 5.337 11 C -0.027 4.027 12 C -0.088 4.088 13 N -0.266 5.266 14 C -0.065 4.065 15 C -0.012 4.012 16 H 0.118 0.882 17 C -0.061 4.061 18 N -0.156 5.156 19 C -0.007 4.007 20 C -0.564 4.564 21 H 0.076 0.924 22 C -0.140 4.140 23 N -0.530 5.530 24 Si 0.719 3.281 25 H -0.197 1.197 26 H -0.209 1.209 27 H -0.210 1.210 28 C -0.093 4.093 29 C -0.005 4.005 30 C -0.116 4.116 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.158 0.842 37 H 0.099 0.901 38 H 0.120 0.880 39 H 0.108 0.892 40 H 0.059 0.941 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.045 0.955 44 H 0.055 0.945 45 H 0.072 0.928 46 H 0.061 0.939 47 H 0.116 0.884 48 H 0.096 0.904 49 H 0.115 0.885 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -25.302 -9.957 13.585 30.395 hybrid contribution 0.703 -0.527 -0.797 1.186 sum -24.599 -10.484 12.788 29.640 Atomic orbital electron populations 1.23097 0.78093 1.04247 1.01418 1.86108 1.21570 1.26514 1.88660 1.18850 0.91962 0.84508 0.97087 1.21439 1.00358 0.92336 1.06515 1.20916 0.94235 0.97306 0.97933 1.21534 0.94028 0.98125 1.01342 1.19652 0.93018 0.93562 1.02969 1.18247 0.87105 0.80904 0.78862 1.90792 1.66398 1.39132 1.44850 1.48044 1.08409 1.27662 1.49540 1.22475 0.96014 0.92877 0.91324 1.22475 0.89447 1.00703 0.96201 1.61996 1.01838 1.41106 1.21648 1.22245 0.94913 1.00484 0.88855 1.19261 0.95556 0.86651 0.99749 0.88196 1.28882 0.91120 0.94351 0.91749 1.81047 1.10573 1.12368 1.11578 1.19179 0.95060 0.98654 0.87853 1.21168 0.95754 1.46568 0.92892 0.92426 1.24954 0.98709 0.95169 0.95145 1.69946 1.36175 1.49049 0.97828 0.86537 0.84769 0.78326 0.78462 1.19653 1.20861 1.20968 1.22580 0.99809 0.92935 0.93935 1.21796 0.78445 1.03140 0.97153 1.20406 0.91414 0.97947 1.01805 0.88014 0.92523 0.92477 0.85022 0.84886 0.84230 0.90108 0.88030 0.89242 0.94130 0.89990 0.92688 0.95542 0.94466 0.92844 0.93897 0.88432 0.90401 0.88460 0.84141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.32 -2.67 10.49 -19.46 -0.20 -2.87 16 3 C 0.12 1.07 6.68 -39.28 -0.26 0.81 16 4 C -0.19 -1.26 9.03 -39.35 -0.36 -1.62 16 5 C -0.09 -0.54 10.02 -39.67 -0.40 -0.94 16 6 C -0.13 -1.02 7.38 -39.17 -0.29 -1.30 16 7 C -0.09 -0.91 5.36 -104.99 -0.56 -1.47 16 8 C 0.56 6.97 7.42 -12.32 -0.09 6.87 16 9 O -0.53 -8.43 16.23 5.32 0.09 -8.34 16 10 N -0.60 -6.63 3.01 -173.57 -0.52 -7.15 16 11 C 0.10 0.84 4.87 -3.60 -0.02 0.82 16 12 C 0.04 0.40 5.62 -3.71 -0.02 0.38 16 13 N -0.54 -6.62 4.33 -234.31 -1.01 -7.64 16 14 C 0.06 0.88 4.32 -3.82 -0.02 0.86 16 15 C 0.01 0.17 2.14 -93.40 -0.20 -0.03 16 16 H 0.10 1.65 6.19 -51.93 -0.32 1.33 16 17 C 0.26 5.13 13.67 -20.71 -0.28 4.85 16 18 N -0.48 -10.49 18.55 42.21 0.78 -9.71 16 19 C 0.03 0.70 4.42 -27.88 -0.12 0.58 16 20 C -0.53 -13.75 8.60 -34.44 -0.30 -14.05 16 21 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 22 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 23 N -0.89 -25.21 13.29 55.43 0.74 -24.47 16 24 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 28 C 0.04 0.42 5.46 -3.70 -0.02 0.40 16 29 C 0.12 1.34 6.61 -3.60 -0.02 1.31 16 30 C -0.10 -1.00 9.54 -39.02 -0.37 -1.37 16 31 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.18 7.66 -51.93 -0.40 -0.22 16 33 H 0.06 0.18 7.66 -51.93 -0.40 -0.22 16 34 H 0.13 0.56 6.28 -52.48 -0.33 0.23 16 35 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 36 H 0.14 0.89 5.75 -52.49 -0.30 0.59 16 37 H 0.08 0.68 7.97 -51.93 -0.41 0.27 16 38 H 0.10 0.73 4.50 -51.93 -0.23 0.49 16 39 H 0.09 0.78 7.99 -51.93 -0.41 0.37 16 40 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 1.12 7.97 -51.93 -0.41 0.71 16 42 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.10 1.16 6.07 -51.93 -0.32 0.85 16 48 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 49 H 0.10 1.17 7.04 -51.93 -0.37 0.80 16 50 H 0.14 1.55 7.97 -52.48 -0.42 1.13 16 LS Contribution 407.18 15.07 6.14 6.14 Total: -1.00 -33.45 407.18 -8.70 -42.15 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -7.24 Total: -3.01 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -2.44 Total: -1.21 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.02 Total: -48.97 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: -0.12 Total: -11.22 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.45 -8.70 -42.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040497401.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.930 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds