Wall clock time and date at job start Tue Mar 31 2020 05:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35911 * 117.00506 * 2 1 4 4 C 1.38857 * 119.98230 * 0.02562 * 3 2 1 5 5 C 1.38236 * 120.23850 * 179.97438 * 4 3 2 6 6 C 1.38007 * 120.21014 * 359.76598 * 5 4 3 7 7 C 1.39558 * 119.96072 * 0.51056 * 6 5 4 8 8 C 1.47861 * 120.11843 * 179.74449 * 7 6 5 9 9 O 1.21552 * 120.00337 * 146.77032 * 8 7 6 10 10 N 1.34777 * 119.99785 * 326.76405 * 8 7 6 11 11 C 1.47084 * 120.88299 * 354.75488 * 10 8 7 12 12 C 1.53233 * 108.52063 * 231.20410 * 11 10 8 13 13 N 1.46896 * 109.34115 * 306.16651 * 12 11 10 14 14 C 1.46904 * 111.00271 * 187.25296 * 13 12 11 15 15 C 1.52997 * 109.47043 * 170.00015 * 14 13 12 16 16 H 1.08996 * 109.47317 * 55.00350 * 15 14 13 17 17 C 1.47201 * 109.47318 * 294.99787 * 15 14 13 18 18 N 9.06975 * 145.79319 * 29.99929 * 5 1 2 19 19 C 1.53009 * 109.46892 * 175.00404 * 15 14 13 20 20 C 1.50696 * 109.46986 * 185.00056 * 19 15 14 21 21 H 1.08000 * 119.99946 * 359.97438 * 20 19 15 22 22 C 1.37876 * 119.99978 * 179.72162 * 20 19 15 23 23 N 1.31520 * 120.00068 * 0.27430 * 22 20 19 24 24 Si 1.86801 * 120.00247 * 180.27636 * 22 20 19 25 25 H 1.48505 * 109.47014 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47470 * 119.99821 * 24 22 20 27 27 H 1.48503 * 109.47182 * 240.00329 * 24 22 20 28 28 C 1.46905 * 111.27022 * 63.10747 * 13 12 11 29 29 C 1.47081 * 120.88049 * 174.77312 * 10 8 7 30 30 C 1.38445 * 119.98993 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.47449 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46998 * 300.00132 * 1 2 3 33 33 H 1.09003 * 109.47359 * 59.99694 * 1 2 3 34 34 H 1.08006 * 119.88027 * 359.97438 * 4 3 2 35 35 H 1.08003 * 119.89668 * 180.02562 * 5 4 3 36 36 H 1.08002 * 120.01778 * 180.25556 * 6 5 4 37 37 H 1.08993 * 109.63251 * 111.49166 * 11 10 8 38 38 H 1.09004 * 109.62453 * 350.90864 * 11 10 8 39 39 H 1.09005 * 109.49822 * 186.20652 * 12 11 10 40 40 H 1.09000 * 109.49848 * 66.12874 * 12 11 10 41 41 H 1.09003 * 109.46823 * 50.00084 * 14 13 12 42 42 H 1.09004 * 109.47399 * 290.00345 * 14 13 12 43 43 H 1.08991 * 109.47127 * 64.99807 * 19 15 14 44 44 H 1.09006 * 109.46567 * 304.99564 * 19 15 14 45 45 H 0.96997 * 120.00137 * 180.02562 * 23 22 20 46 46 H 1.09003 * 109.48971 * 56.85701 * 28 13 12 47 47 H 1.08999 * 109.49186 * 176.93727 * 28 13 12 48 48 H 1.09008 * 109.62881 * 248.50146 * 29 10 8 49 49 H 1.08990 * 109.63310 * 8.89140 * 29 10 8 50 50 H 1.08005 * 120.10290 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2896 2.3753 0.0005 5 6 1.9117 3.6097 0.0011 6 6 3.2893 3.6931 0.0060 7 6 4.0580 2.5283 -0.0004 8 6 5.5341 2.6135 -0.0009 9 8 6.1921 1.7666 0.5712 10 7 6.1502 3.6303 -0.6359 11 6 5.3815 4.6009 -1.4299 12 6 6.0235 4.7126 -2.8167 13 7 7.4514 5.0238 -2.6681 14 6 8.0667 5.3084 -3.9714 15 6 9.4753 5.8667 -3.7594 16 1 10.0529 5.1731 -3.1484 17 6 9.3898 7.1680 -3.0766 18 7 9.3245 8.1724 -2.5469 19 6 10.1621 6.0462 -5.1148 20 6 11.5897 6.4789 -4.9011 21 1 11.9691 6.6130 -3.8989 22 6 12.4130 6.6987 -5.9850 23 7 11.9509 6.5358 -7.2056 24 14 14.1849 7.2276 -5.7201 25 1 14.4556 7.3396 -4.2642 26 1 15.0971 6.2195 -6.3175 27 1 14.4104 8.5448 -6.3677 28 6 8.1634 3.9417 -1.9751 29 6 7.6090 3.7984 -0.5537 30 6 3.4286 1.2830 -0.0005 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 0.2111 2.3163 0.0005 35 1 1.3179 4.5119 0.0019 36 1 3.7721 4.6591 0.0105 37 1 5.4008 5.5734 -0.9381 38 1 4.3515 4.2583 -1.5298 39 1 5.5350 5.5070 -3.3810 40 1 5.9107 3.7670 -3.3471 41 1 7.4622 6.0410 -4.5063 42 1 8.1241 4.3894 -4.5547 43 1 9.6347 6.8058 -5.6916 44 1 10.1463 5.1013 -5.6580 45 1 12.5303 6.6901 -7.9681 46 1 8.0207 3.0069 -2.5172 47 1 9.2267 4.1772 -1.9288 48 1 7.8425 4.6939 0.0223 49 1 8.0514 2.9270 -0.0712 50 1 4.0183 0.3781 -0.0005 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040497401.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:40 Heat of formation + Delta-G solvation = -20.107922 kcal Electronic energy + Delta-G solvation = -31032.130237 eV Core-core repulsion = 26831.496851 eV Total energy + Delta-G solvation = -4200.633387 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.83602 -40.73877 -39.56355 -38.14248 -37.83314 -36.00123 -35.24854 -33.35280 -32.74819 -32.12443 -31.01412 -29.49011 -28.21598 -27.47628 -25.39252 -24.70130 -23.89113 -23.53482 -23.14272 -22.03109 -20.52061 -19.13066 -18.53565 -18.20515 -17.86434 -17.34343 -16.92035 -16.87401 -16.73886 -16.60193 -16.33120 -16.00190 -15.87480 -15.66083 -15.16653 -14.80251 -14.70354 -14.60912 -14.45436 -14.27079 -13.98431 -13.78303 -13.67660 -13.41666 -13.18831 -13.11993 -13.00089 -12.74996 -12.65061 -12.59758 -12.48372 -12.32730 -12.21235 -12.18156 -12.00075 -11.90352 -11.69260 -11.34507 -11.16978 -10.94695 -10.54845 -10.13750 -9.84470 -9.26257 -9.24320 -8.19180 -6.26840 -0.19442 0.35118 1.39160 1.42666 1.52603 1.60979 1.80817 2.09393 2.16755 2.37454 2.41783 2.68877 2.88499 3.16659 3.35359 3.37110 3.78300 3.84005 3.93401 4.01069 4.06244 4.13433 4.24118 4.24376 4.27279 4.40516 4.41605 4.42449 4.46032 4.48065 4.58663 4.69919 4.74296 4.75811 4.76852 4.87051 4.87561 4.94958 5.00347 5.06246 5.16201 5.26168 5.33938 5.38813 5.48026 5.62635 5.63124 5.79932 5.94784 6.08616 6.21516 6.29496 6.38541 6.84851 6.96502 6.97519 7.41820 8.91757 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.022981 B = 0.001770 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.121291 B =15811.679208 C =15850.119920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.340 6.340 3 C 0.113 3.887 4 C -0.179 4.179 5 C -0.076 4.076 6 C -0.129 4.129 7 C -0.105 4.105 8 C 0.556 3.444 9 O -0.581 6.581 10 N -0.601 5.601 11 C 0.097 3.903 12 C 0.039 3.961 13 N -0.548 5.548 14 C 0.074 3.926 15 C 0.020 3.980 16 H 0.114 0.886 17 C 0.267 3.733 18 N -0.511 5.511 19 C 0.038 3.962 20 C -0.537 4.537 21 H 0.053 0.947 22 C 0.012 3.988 23 N -0.922 5.922 24 Si 0.947 3.053 25 H -0.270 1.270 26 H -0.275 1.275 27 H -0.285 1.285 28 C 0.040 3.960 29 C 0.119 3.881 30 C -0.122 4.122 31 H 0.115 0.885 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.162 0.838 35 H 0.170 0.830 36 H 0.156 0.844 37 H 0.091 0.909 38 H 0.123 0.877 39 H 0.107 0.893 40 H 0.040 0.960 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.004 0.996 44 H 0.033 0.967 45 H 0.263 0.737 46 H 0.041 0.959 47 H 0.094 0.906 48 H 0.079 0.921 49 H 0.086 0.914 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.156 -10.448 12.710 32.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.254 6.254 3 C 0.067 3.933 4 C -0.198 4.198 5 C -0.094 4.094 6 C -0.148 4.148 7 C -0.108 4.108 8 C 0.346 3.654 9 O -0.462 6.462 10 N -0.333 5.333 11 C -0.024 4.024 12 C -0.089 4.089 13 N -0.272 5.272 14 C -0.054 4.054 15 C -0.002 4.002 16 H 0.132 0.868 17 C -0.049 4.049 18 N -0.188 5.188 19 C -0.001 4.001 20 C -0.575 4.575 21 H 0.072 0.928 22 C -0.187 4.187 23 N -0.563 5.563 24 Si 0.773 3.227 25 H -0.194 1.194 26 H -0.200 1.200 27 H -0.211 1.211 28 C -0.089 4.089 29 C -0.003 4.003 30 C -0.142 4.142 31 H 0.133 0.867 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.179 0.821 35 H 0.187 0.813 36 H 0.173 0.827 37 H 0.110 0.890 38 H 0.140 0.860 39 H 0.125 0.875 40 H 0.059 0.941 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.023 0.977 44 H 0.051 0.949 45 H 0.072 0.928 46 H 0.059 0.941 47 H 0.113 0.887 48 H 0.097 0.903 49 H 0.104 0.896 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -27.739 -9.133 13.917 32.350 hybrid contribution 1.363 -0.802 -0.891 1.815 sum -26.376 -9.935 13.025 31.049 Atomic orbital electron populations 1.23403 0.75922 1.05717 1.02709 1.86079 1.23908 1.26767 1.88676 1.18945 0.91508 0.85579 0.97235 1.21809 1.01767 0.91552 1.04622 1.21342 0.93727 0.98457 0.95851 1.21723 0.94754 0.97596 1.00698 1.19526 0.91682 0.94561 1.05025 1.18682 0.88138 0.80385 0.78148 1.90755 1.67575 1.40888 1.46975 1.48131 1.08302 1.27640 1.49192 1.22661 0.96603 0.92767 0.90382 1.22587 0.87847 1.01345 0.97089 1.61954 1.03169 1.41508 1.20618 1.22057 0.92635 1.00838 0.89899 1.19187 0.97963 0.86036 0.96982 0.86840 1.29286 0.90075 0.94427 0.91113 1.81048 1.11863 1.13263 1.12674 1.18992 0.93574 0.97430 0.90116 1.21579 0.97577 1.45780 0.92576 0.92831 1.25688 1.02309 0.95587 0.95128 1.70032 1.37443 1.50331 0.98451 0.85669 0.80836 0.77898 0.78315 1.19422 1.19999 1.21096 1.22528 0.99659 0.92752 0.93929 1.21699 0.79049 1.02655 0.96927 1.20350 0.92493 0.97407 1.03956 0.86705 0.91185 0.91051 0.82069 0.81296 0.82684 0.89047 0.85987 0.87516 0.94123 0.89491 0.91612 0.97721 0.94854 0.92760 0.94080 0.88739 0.90265 0.89571 0.86510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 113.37 1.11 1.22 16 2 O -0.34 -5.58 10.49 -92.54 -0.97 -6.55 16 3 C 0.11 1.90 6.68 22.47 0.15 2.05 16 4 C -0.18 -1.85 9.03 22.42 0.20 -1.65 16 5 C -0.08 -0.66 10.02 22.21 0.22 -0.44 16 6 C -0.13 -1.67 7.38 22.53 0.17 -1.50 16 7 C -0.10 -2.12 5.36 -20.10 -0.11 -2.23 16 8 C 0.56 14.16 7.42 86.79 0.64 14.80 16 9 O -0.58 -19.51 16.23 -3.88 -0.06 -19.57 16 10 N -0.60 -12.84 3.01 -821.32 -2.47 -15.31 16 11 C 0.10 1.48 4.87 86.35 0.42 1.90 16 12 C 0.04 0.68 5.62 86.38 0.49 1.17 16 13 N -0.55 -12.46 4.33 -895.23 -3.88 -16.34 16 14 C 0.07 1.93 4.32 86.30 0.37 2.31 16 15 C 0.02 0.69 2.14 -12.60 -0.03 0.66 16 16 H 0.11 3.62 6.19 -2.39 -0.01 3.61 16 17 C 0.27 10.49 13.67 89.43 1.22 11.71 16 18 N -0.51 -22.03 18.55 20.02 0.37 -21.66 16 19 C 0.04 1.69 4.42 29.85 0.13 1.82 16 20 C -0.54 -28.03 8.60 25.60 0.22 -27.81 16 21 H 0.05 2.78 7.59 -2.91 -0.02 2.76 16 22 C 0.01 0.64 5.46 84.65 0.46 1.10 16 23 N -0.92 -52.39 13.29 21.45 0.28 -52.11 16 24 Si 0.95 43.24 29.54 68.60 2.03 45.27 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 27 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 28 C 0.04 0.90 5.46 86.38 0.47 1.38 16 29 C 0.12 2.72 6.61 86.35 0.57 3.29 16 30 C -0.12 -2.65 9.54 22.63 0.22 -2.43 16 31 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.07 0.25 7.66 -2.39 -0.02 0.23 16 33 H 0.07 0.24 7.66 -2.39 -0.02 0.22 16 34 H 0.16 0.66 6.28 -2.91 -0.02 0.64 16 35 H 0.17 0.31 8.06 -2.91 -0.02 0.29 16 36 H 0.16 1.47 5.75 -2.91 -0.02 1.45 16 37 H 0.09 1.26 7.97 -2.39 -0.02 1.24 16 38 H 0.12 1.39 4.50 -2.38 -0.01 1.38 16 39 H 0.11 1.52 7.99 -2.38 -0.02 1.50 16 40 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.09 2.21 7.97 -2.39 -0.02 2.19 16 42 H 0.07 1.60 8.12 -2.39 -0.02 1.58 16 43 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 44 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 45 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 46 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.09 2.18 6.07 -2.39 -0.01 2.17 16 48 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 49 H 0.09 2.16 7.04 -2.39 -0.02 2.15 16 50 H 0.12 2.94 7.97 -2.91 -0.02 2.91 16 Total: -1.00 -73.98 407.18 3.20 -70.78 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 0.96 Total: 8.16 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 6.94 Total: 7.35 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -5.69 Total: -105.43 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -1.03 Total: -26.12 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -73.98 3.20 -70.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040497401.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.669 kcal (2) G-P(sol) polarization free energy of solvation -73.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds