Wall clock time and date at job start Tue Mar 31 2020 05:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00029 * 2 1 4 4 H 1.48499 * 109.46972 * 269.99858 * 3 2 1 5 5 H 1.48492 * 109.46984 * 29.99917 * 3 2 1 6 6 H 1.48500 * 109.47023 * 150.00098 * 3 2 1 7 7 C 1.37879 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99839 * 359.97438 * 7 2 1 9 9 C 1.50691 * 120.00343 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47536 * 184.60910 * 9 7 2 11 11 C 1.46898 * 110.99686 * 300.30527 * 10 9 7 12 12 C 1.50703 * 109.47101 * 288.07425 * 11 10 9 13 13 C 1.38675 * 120.41956 * 275.76138 * 12 11 10 14 14 C 1.38625 * 118.41987 * 179.78603 * 13 12 11 15 15 C 1.38222 * 119.16022 * 0.50890 * 14 13 12 16 16 N 1.31859 * 120.76661 * 359.73446 * 15 14 13 17 17 C 1.31885 * 121.72090 * 359.97438 * 16 15 14 18 18 C 1.46900 * 111.00126 * 64.25627 * 10 9 7 19 19 N 1.46504 * 109.46844 * 81.04905 * 18 10 9 20 20 N 1.40447 * 126.30259 * 285.29157 * 19 18 10 21 21 C 1.28453 * 108.08111 * 180.13163 * 20 19 18 22 22 N 1.38424 * 108.80100 * 359.67708 * 21 20 19 23 23 C 1.33796 * 108.43896 * 0.15487 * 22 21 20 24 24 O 1.21818 * 126.36009 * 180.10502 * 23 22 21 25 25 C 1.47224 * 122.74599 * 180.13531 * 22 21 20 26 26 C 1.53137 * 107.84068 * 67.39541 * 25 22 21 27 27 C 1.51014 * 111.77372 * 276.77658 * 26 25 22 28 28 C 1.51069 * 115.14639 * 70.81216 * 27 26 25 29 29 C 1.51507 * 128.59347 * 179.97438 * 21 20 19 30 30 H 0.97006 * 120.00218 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47334 * 64.59949 * 9 7 2 32 32 H 1.09000 * 109.47065 * 304.60816 * 9 7 2 33 33 H 1.08999 * 109.47169 * 48.07357 * 11 10 9 34 34 H 1.09002 * 109.47314 * 168.07436 * 11 10 9 35 35 H 1.08005 * 120.78684 * 0.02562 * 13 12 11 36 36 H 1.08001 * 120.41857 * 180.22465 * 14 13 12 37 37 H 1.08004 * 119.61648 * 179.75273 * 15 14 13 38 38 H 1.08001 * 119.61142 * 180.02562 * 17 16 15 39 39 H 1.09004 * 109.47216 * 321.05205 * 18 10 9 40 40 H 1.08996 * 109.47049 * 201.05110 * 18 10 9 41 41 H 1.09002 * 109.78266 * 307.80405 * 25 22 21 42 42 H 1.08999 * 109.83186 * 187.00835 * 25 22 21 43 43 H 1.09006 * 109.02203 * 156.19017 * 26 25 22 44 44 H 1.08997 * 108.96123 * 37.32438 * 26 25 22 45 45 H 1.08999 * 108.34889 * 309.34040 * 27 26 25 46 46 H 1.09001 * 108.20924 * 192.17309 * 27 26 25 47 47 H 1.08999 * 109.07114 * 169.07627 * 28 27 26 48 48 H 1.09001 * 109.06574 * 50.13347 * 28 27 26 49 49 H 1.09001 * 109.81272 * 232.25628 * 29 21 20 50 50 H 1.08994 * 109.81695 * 353.10517 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5745 -0.1120 11 6 3.5238 -3.3950 1.0091 12 6 4.2473 -2.9942 2.2688 13 6 5.4916 -3.5302 2.5648 14 6 6.1220 -3.1290 3.7324 15 6 5.4892 -2.2227 4.5622 16 7 4.3033 -1.7373 4.2513 17 6 3.6768 -2.0920 3.1463 18 6 3.6156 -3.1671 -1.3997 19 7 4.5480 -2.7246 -2.4395 20 7 4.5893 -1.4522 -3.0325 21 6 5.5372 -1.4470 -3.8995 22 7 6.1462 -2.6900 -3.9021 23 6 5.5309 -3.4646 -3.0012 24 8 5.8054 -4.6214 -2.7358 25 6 7.2781 -3.0204 -4.7836 26 6 8.4824 -2.1891 -4.3322 27 6 8.4525 -0.7968 -4.9161 28 6 7.3858 0.1127 -4.3529 29 6 5.9856 -0.3163 -4.8027 30 1 -0.4851 0.8401 -0.0004 31 1 3.8745 -0.7539 0.9288 32 1 3.8751 -0.6099 -0.8452 33 1 2.4527 -3.2421 1.1409 34 1 3.7174 -4.4467 0.7979 35 1 5.9600 -4.2404 1.8994 36 1 7.0932 -3.5232 3.9926 37 1 5.9719 -1.9081 5.4758 38 1 2.7064 -1.6728 2.9250 39 1 2.6056 -2.8490 -1.6581 40 1 3.6459 -4.2539 -1.3231 41 1 7.0261 -2.7751 -5.8153 42 1 7.5117 -4.0821 -4.7034 43 1 9.3979 -2.6881 -4.6504 44 1 8.4763 -2.1184 -3.2446 45 1 8.3001 -0.8791 -5.9922 46 1 9.4241 -0.3340 -4.7432 47 1 7.5717 1.1320 -4.6913 48 1 7.4335 0.0859 -3.2642 49 1 6.0192 -0.6603 -5.8365 50 1 5.2954 0.5227 -4.7149 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044894842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:33 Heat of formation + Delta-G solvation = 89.776051 kcal Electronic energy + Delta-G solvation = -33060.211160 eV Core-core repulsion = 28896.635450 eV Total energy + Delta-G solvation = -4163.575709 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.22620 -39.79871 -37.87698 -37.01145 -36.58429 -33.84175 -32.76658 -32.64038 -31.81751 -31.00598 -29.54885 -28.14670 -27.47412 -25.50821 -24.04514 -23.83095 -23.11109 -22.19884 -21.33126 -20.62022 -20.15655 -19.78912 -17.58557 -16.95857 -16.60545 -16.39899 -15.90842 -15.78060 -15.60781 -15.11495 -14.95450 -14.64061 -14.38756 -14.37067 -14.23173 -14.05177 -13.53459 -13.19643 -13.02302 -12.91062 -12.70527 -12.65633 -12.44253 -11.95741 -11.93588 -11.76627 -11.45891 -11.33680 -11.30345 -11.19296 -11.06849 -11.01125 -10.92491 -10.81065 -10.36477 -10.02144 -9.79592 -9.77321 -9.59359 -9.39540 -9.02862 -8.63171 -8.58033 -8.19992 -7.45099 -6.13681 -4.13943 1.49333 1.68025 2.12060 2.30111 3.04806 3.27408 3.30806 3.37174 3.43084 4.16363 4.33828 4.40510 4.42660 4.47858 4.59770 4.77125 4.82561 4.96999 5.03936 5.09905 5.12342 5.14523 5.21220 5.27506 5.34465 5.37751 5.40313 5.51388 5.53936 5.60679 5.69500 5.79458 5.80141 5.87672 5.90227 5.92508 6.03004 6.15557 6.22784 6.27039 6.39491 6.45003 6.48769 6.76406 6.80948 6.93514 7.14558 7.15142 7.46615 7.81334 7.87282 8.08664 8.36470 8.38777 8.44626 8.84229 9.50026 10.98312 Molecular weight = 357.19amu Principal moments of inertia in cm(-1) A = 0.008374 B = 0.004038 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3342.793326 B = 6933.188152 C = 8513.071670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.082 3.918 3 Si 0.874 3.126 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.553 4.553 8 H 0.076 0.924 9 C 0.153 3.847 10 N -0.546 5.546 11 C 0.101 3.899 12 C -0.109 4.109 13 C -0.062 4.062 14 C -0.184 4.184 15 C 0.084 3.916 16 N -0.490 5.490 17 C 0.119 3.881 18 C 0.323 3.677 19 N -0.430 5.430 20 N -0.243 5.243 21 C 0.249 3.751 22 N -0.562 5.562 23 C 0.652 3.348 24 O -0.571 6.571 25 C 0.133 3.867 26 C -0.138 4.138 27 C -0.120 4.120 28 C -0.120 4.120 29 C -0.035 4.035 30 H 0.264 0.736 31 H 0.026 0.974 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.147 0.853 38 H 0.165 0.835 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.079 0.921 48 H 0.069 0.931 49 H 0.093 0.907 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.665 -3.298 -8.442 18.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.121 4.121 3 Si 0.702 3.298 4 H -0.199 1.199 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.591 4.591 8 H 0.094 0.906 9 C 0.027 3.973 10 N -0.270 5.270 11 C -0.027 4.027 12 C -0.111 4.111 13 C -0.088 4.088 14 C -0.204 4.204 15 C -0.073 4.073 16 N -0.199 5.199 17 C -0.038 4.038 18 C 0.113 3.887 19 N -0.251 5.251 20 N -0.062 5.062 21 C -0.030 4.030 22 N -0.292 5.292 23 C 0.352 3.648 24 O -0.446 6.446 25 C 0.011 3.989 26 C -0.177 4.177 27 C -0.157 4.157 28 C -0.158 4.158 29 C -0.075 4.075 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.164 0.836 38 H 0.182 0.818 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.115 0.885 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.098 0.902 48 H 0.088 0.912 49 H 0.111 0.889 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 15.981 -2.926 -7.131 17.742 hybrid contribution 0.595 -0.025 -0.836 1.026 sum 16.575 -2.950 -7.968 18.626 Atomic orbital electron populations 1.69910 1.06293 1.27096 1.49873 1.24832 0.94532 0.98999 0.93765 0.86853 0.80428 0.83828 0.78723 1.19920 1.21433 1.19113 1.21516 0.90211 0.94581 1.52819 0.90639 1.20303 0.94675 0.84774 0.97584 1.61954 1.59888 1.04979 1.00186 1.20857 0.98808 0.95685 0.87354 1.20803 0.95546 0.97726 0.97065 1.21451 0.93849 0.97973 0.95559 1.22016 1.01277 1.00699 0.96434 1.22650 0.91640 0.94060 0.98955 1.67736 1.09228 1.24290 1.18625 1.23007 0.99920 0.92448 0.88436 1.21877 0.89333 0.96291 0.81169 1.49463 1.31576 1.07874 1.36161 1.76819 1.18127 1.02608 1.08641 1.24446 0.92083 0.88239 0.98216 1.46359 1.32589 1.12605 1.37692 1.16484 0.81450 0.85486 0.81384 1.91014 1.70739 1.13723 1.69170 1.21828 0.83318 1.01293 0.92450 1.21647 0.97770 0.95861 1.02392 1.20868 0.99416 0.94868 1.00575 1.21256 0.92678 0.99671 1.02215 1.20469 0.97582 0.93401 0.96077 0.92621 0.95550 0.94065 0.90657 0.91251 0.85366 0.85590 0.83592 0.81812 0.88910 0.88845 0.89608 0.88525 0.90084 0.91070 0.91754 0.91535 0.90218 0.91210 0.88906 0.87773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.96 55.43 0.77 -25.41 16 2 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 3 Si 0.87 21.54 27.38 -169.99 -4.65 16.88 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.54 6.68 56.52 0.38 -6.16 16 7 C -0.55 -14.38 7.68 -34.44 -0.26 -14.64 16 8 H 0.08 2.08 6.38 -52.48 -0.33 1.74 16 9 C 0.15 3.59 3.94 -4.98 -0.02 3.57 16 10 N -0.55 -11.13 4.76 -241.43 -1.15 -12.28 16 11 C 0.10 1.85 4.95 -4.98 -0.02 1.82 16 12 C -0.11 -1.95 4.90 -104.48 -0.51 -2.46 16 13 C -0.06 -0.97 9.88 -39.28 -0.39 -1.36 16 14 C -0.18 -2.60 10.11 -39.44 -0.40 -3.00 16 15 C 0.08 1.28 11.18 -17.55 -0.20 1.08 16 16 N -0.49 -9.06 10.36 -13.25 -0.14 -9.20 16 17 C 0.12 2.28 9.74 -17.55 -0.17 2.11 16 18 C 0.32 6.37 6.11 -63.31 -0.39 5.98 16 19 N -0.43 -8.37 3.84 -68.34 -0.26 -8.63 16 20 N -0.24 -4.55 11.25 33.24 0.37 -4.17 16 21 C 0.25 3.59 7.10 -153.50 -1.09 2.50 16 22 N -0.56 -8.09 2.76 -117.19 -0.32 -8.41 16 23 C 0.65 12.13 8.68 -87.36 -0.76 11.37 16 24 O -0.57 -11.86 17.58 5.08 0.09 -11.77 16 25 C 0.13 1.28 6.32 -3.58 -0.02 1.26 16 26 C -0.14 -1.11 5.63 -27.66 -0.16 -1.27 16 27 C -0.12 -0.78 5.19 -28.70 -0.15 -0.93 16 28 C -0.12 -0.97 5.57 -27.60 -0.15 -1.12 16 29 C -0.04 -0.33 5.81 -27.39 -0.16 -0.49 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.03 0.66 6.07 -51.93 -0.32 0.34 16 32 H 0.04 1.03 6.01 -51.93 -0.31 0.71 16 33 H 0.08 1.49 5.97 -51.93 -0.31 1.18 16 34 H 0.07 1.12 7.63 -51.93 -0.40 0.72 16 35 H 0.13 1.85 8.06 -52.48 -0.42 1.43 16 36 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.15 1.74 8.06 -52.48 -0.42 1.32 16 38 H 0.16 3.36 8.06 -52.49 -0.42 2.93 16 39 H 0.09 2.00 6.52 -51.93 -0.34 1.66 16 40 H 0.09 1.69 7.28 -51.93 -0.38 1.31 16 41 H 0.09 0.60 7.67 -51.93 -0.40 0.20 16 42 H 0.10 0.97 8.01 -51.93 -0.42 0.55 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 45 H 0.06 0.32 7.80 -51.93 -0.41 -0.09 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.07 0.74 7.89 -51.93 -0.41 0.33 16 49 H 0.09 0.63 7.70 -51.93 -0.40 0.23 16 50 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 397.13 15.07 5.98 5.98 Total: -1.00 -34.32 397.13 -11.62 -45.95 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -7.37 Total: 4.46 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: -4.95 Total: 6.60 kcal Atomic # 7 Polarization: -67.38 SS G_CDS: -0.72 Total: -68.10 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.65 Total: 16.88 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.32 -11.62 -45.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044894842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.723 kcal (2) G-P(sol) polarization free energy of solvation -34.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds