Wall clock time and date at job start Tue Mar 31 2020 05:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00029 * 2 1 4 4 H 1.48499 * 109.46972 * 269.99858 * 3 2 1 5 5 H 1.48492 * 109.46984 * 29.99917 * 3 2 1 6 6 H 1.48500 * 109.47023 * 150.00098 * 3 2 1 7 7 C 1.37879 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99839 * 359.97438 * 7 2 1 9 9 C 1.50691 * 120.00343 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47536 * 184.60910 * 9 7 2 11 11 C 1.46898 * 110.99686 * 300.30527 * 10 9 7 12 12 C 1.50703 * 109.47101 * 288.07425 * 11 10 9 13 13 C 1.38675 * 120.41956 * 275.76138 * 12 11 10 14 14 C 1.38625 * 118.41987 * 179.78603 * 13 12 11 15 15 C 1.38222 * 119.16022 * 0.50890 * 14 13 12 16 16 N 1.31859 * 120.76661 * 359.73446 * 15 14 13 17 17 C 1.31885 * 121.72090 * 359.97438 * 16 15 14 18 18 C 1.46900 * 111.00126 * 64.25627 * 10 9 7 19 19 N 1.46504 * 109.46844 * 81.04905 * 18 10 9 20 20 N 1.40447 * 126.30259 * 285.29157 * 19 18 10 21 21 C 1.28453 * 108.08111 * 180.13163 * 20 19 18 22 22 N 1.38424 * 108.80100 * 359.67708 * 21 20 19 23 23 C 1.33796 * 108.43896 * 0.15487 * 22 21 20 24 24 O 1.21818 * 126.36009 * 180.10502 * 23 22 21 25 25 C 1.47224 * 122.74599 * 180.13531 * 22 21 20 26 26 C 1.53137 * 107.84068 * 67.39541 * 25 22 21 27 27 C 1.51014 * 111.77372 * 276.77658 * 26 25 22 28 28 C 1.51069 * 115.14639 * 70.81216 * 27 26 25 29 29 C 1.51507 * 128.59347 * 179.97438 * 21 20 19 30 30 H 0.97006 * 120.00218 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47334 * 64.59949 * 9 7 2 32 32 H 1.09000 * 109.47065 * 304.60816 * 9 7 2 33 33 H 1.08999 * 109.47169 * 48.07357 * 11 10 9 34 34 H 1.09002 * 109.47314 * 168.07436 * 11 10 9 35 35 H 1.08005 * 120.78684 * 0.02562 * 13 12 11 36 36 H 1.08001 * 120.41857 * 180.22465 * 14 13 12 37 37 H 1.08004 * 119.61648 * 179.75273 * 15 14 13 38 38 H 1.08001 * 119.61142 * 180.02562 * 17 16 15 39 39 H 1.09004 * 109.47216 * 321.05205 * 18 10 9 40 40 H 1.08996 * 109.47049 * 201.05110 * 18 10 9 41 41 H 1.09002 * 109.78266 * 307.80405 * 25 22 21 42 42 H 1.08999 * 109.83186 * 187.00835 * 25 22 21 43 43 H 1.09006 * 109.02203 * 156.19017 * 26 25 22 44 44 H 1.08997 * 108.96123 * 37.32438 * 26 25 22 45 45 H 1.08999 * 108.34889 * 309.34040 * 27 26 25 46 46 H 1.09001 * 108.20924 * 192.17309 * 27 26 25 47 47 H 1.08999 * 109.07114 * 169.07627 * 28 27 26 48 48 H 1.09001 * 109.06574 * 50.13347 * 28 27 26 49 49 H 1.09001 * 109.81272 * 232.25628 * 29 21 20 50 50 H 1.08994 * 109.81695 * 353.10517 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5745 -0.1120 11 6 3.5238 -3.3950 1.0091 12 6 4.2473 -2.9942 2.2688 13 6 5.4916 -3.5302 2.5648 14 6 6.1220 -3.1290 3.7324 15 6 5.4892 -2.2227 4.5622 16 7 4.3033 -1.7373 4.2513 17 6 3.6768 -2.0920 3.1463 18 6 3.6156 -3.1671 -1.3997 19 7 4.5480 -2.7246 -2.4395 20 7 4.5893 -1.4522 -3.0325 21 6 5.5372 -1.4470 -3.8995 22 7 6.1462 -2.6900 -3.9021 23 6 5.5309 -3.4646 -3.0012 24 8 5.8054 -4.6214 -2.7358 25 6 7.2781 -3.0204 -4.7836 26 6 8.4824 -2.1891 -4.3322 27 6 8.4525 -0.7968 -4.9161 28 6 7.3858 0.1127 -4.3529 29 6 5.9856 -0.3163 -4.8027 30 1 -0.4851 0.8401 -0.0004 31 1 3.8745 -0.7539 0.9288 32 1 3.8751 -0.6099 -0.8452 33 1 2.4527 -3.2421 1.1409 34 1 3.7174 -4.4467 0.7979 35 1 5.9600 -4.2404 1.8994 36 1 7.0932 -3.5232 3.9926 37 1 5.9719 -1.9081 5.4758 38 1 2.7064 -1.6728 2.9250 39 1 2.6056 -2.8490 -1.6581 40 1 3.6459 -4.2539 -1.3231 41 1 7.0261 -2.7751 -5.8153 42 1 7.5117 -4.0821 -4.7034 43 1 9.3979 -2.6881 -4.6504 44 1 8.4763 -2.1184 -3.2446 45 1 8.3001 -0.8791 -5.9922 46 1 9.4241 -0.3340 -4.7432 47 1 7.5717 1.1320 -4.6913 48 1 7.4335 0.0859 -3.2642 49 1 6.0192 -0.6603 -5.8365 50 1 5.2954 0.5227 -4.7149 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044894842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:32 Heat of formation + Delta-G solvation = 67.492302 kcal Electronic energy + Delta-G solvation = -33061.177455 eV Core-core repulsion = 28896.635450 eV Total energy + Delta-G solvation = -4164.542005 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.191 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.48811 -41.14132 -39.08613 -38.52144 -37.75060 -34.91073 -34.63689 -33.93493 -33.16276 -32.31112 -30.78370 -29.76427 -28.71578 -26.83008 -25.56662 -24.88812 -24.43308 -23.66862 -22.56808 -21.53724 -21.35343 -21.20772 -19.30745 -18.42860 -17.90190 -17.75138 -17.26724 -17.06822 -16.91276 -16.41882 -16.28118 -16.02830 -15.88962 -15.72800 -15.40961 -14.96844 -14.60799 -14.50746 -14.39106 -14.26551 -13.91939 -13.83890 -13.74568 -13.48978 -13.14018 -13.11281 -13.02607 -12.82843 -12.77906 -12.47432 -12.36489 -12.21407 -11.95132 -11.83782 -11.72287 -11.59337 -11.58108 -11.20919 -10.87260 -10.77964 -10.67658 -10.35562 -9.94473 -9.61421 -9.18999 -8.31189 -6.33115 0.19152 0.38886 0.85089 1.12153 1.31217 1.32452 1.42709 1.65323 2.12176 2.32419 2.82129 3.05409 3.26896 3.40548 3.58470 3.61920 3.81609 3.84736 3.89635 3.98536 4.00660 4.13536 4.14033 4.17980 4.34040 4.39806 4.42045 4.48189 4.52209 4.57190 4.62987 4.83098 4.86995 4.88202 4.89887 4.92075 5.03546 5.06584 5.13357 5.18409 5.21656 5.23613 5.26708 5.29507 5.39112 5.46701 5.49185 5.72653 5.83407 5.95176 6.17456 6.24397 6.69005 6.76717 7.05441 7.07164 7.32884 8.83874 Molecular weight = 357.19amu Principal moments of inertia in cm(-1) A = 0.008374 B = 0.004038 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3342.793326 B = 6933.188152 C = 8513.071670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.031 3.969 3 Si 0.929 3.071 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.536 4.536 8 H 0.050 0.950 9 C 0.175 3.825 10 N -0.541 5.541 11 C 0.105 3.895 12 C -0.122 4.122 13 C -0.064 4.064 14 C -0.167 4.167 15 C 0.082 3.918 16 N -0.516 5.516 17 C 0.096 3.904 18 C 0.330 3.670 19 N -0.444 5.444 20 N -0.303 5.303 21 C 0.272 3.728 22 N -0.554 5.554 23 C 0.642 3.358 24 O -0.601 6.601 25 C 0.122 3.878 26 C -0.132 4.132 27 C -0.118 4.118 28 C -0.116 4.116 29 C -0.036 4.036 30 H 0.265 0.735 31 H 0.013 0.987 32 H 0.032 0.968 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.145 0.855 36 H 0.170 0.830 37 H 0.184 0.816 38 H 0.133 0.867 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.124 0.876 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.037 0.963 45 H 0.094 0.906 46 H 0.079 0.921 47 H 0.105 0.895 48 H 0.036 0.964 49 H 0.132 0.868 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.890 -2.821 -10.057 23.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.168 4.168 3 Si 0.755 3.245 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.575 4.575 8 H 0.068 0.932 9 C 0.048 3.952 10 N -0.266 5.266 11 C -0.023 4.023 12 C -0.125 4.125 13 C -0.090 4.090 14 C -0.186 4.186 15 C -0.076 4.076 16 N -0.225 5.225 17 C -0.061 4.061 18 C 0.120 3.880 19 N -0.264 5.264 20 N -0.123 5.123 21 C -0.006 4.006 22 N -0.283 5.283 23 C 0.341 3.659 24 O -0.479 6.479 25 C 0.003 3.997 26 C -0.171 4.171 27 C -0.155 4.155 28 C -0.154 4.154 29 C -0.076 4.076 30 H 0.074 0.926 31 H 0.031 0.969 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.163 0.837 36 H 0.188 0.812 37 H 0.201 0.799 38 H 0.150 0.850 39 H 0.083 0.917 40 H 0.124 0.876 41 H 0.142 0.858 42 H 0.109 0.891 43 H 0.125 0.875 44 H 0.056 0.944 45 H 0.113 0.887 46 H 0.098 0.902 47 H 0.124 0.876 48 H 0.055 0.945 49 H 0.150 0.850 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 20.240 -2.440 -8.790 22.201 hybrid contribution -0.602 -0.264 -0.347 0.744 sum 19.638 -2.704 -9.137 21.827 Atomic orbital electron populations 1.70025 1.07719 1.27837 1.52064 1.25533 0.95160 1.02157 0.93986 0.85975 0.79117 0.80328 0.79108 1.18835 1.21053 1.19113 1.21658 0.91624 0.93444 1.50761 0.93211 1.19914 0.92462 0.86686 0.96186 1.61995 1.59478 1.03895 1.01183 1.20841 0.97485 0.96642 0.87294 1.20706 0.96809 0.98433 0.96507 1.21700 0.92822 0.97899 0.96589 1.22453 1.02380 0.99016 0.94757 1.23330 0.90451 0.93538 1.00234 1.67680 1.11015 1.25384 1.18462 1.22619 0.99549 0.93971 0.89920 1.21655 0.88563 0.96821 0.81002 1.49367 1.31936 1.08744 1.36346 1.76802 1.21455 1.02557 1.11501 1.25491 0.89742 0.88960 0.96445 1.46617 1.32881 1.11897 1.36880 1.16658 0.81649 0.85419 0.82138 1.90968 1.71677 1.14924 1.70378 1.22348 0.82384 1.01596 0.93419 1.21639 0.97951 0.97151 1.00316 1.20877 0.99391 0.93235 1.02013 1.21277 0.92219 1.01669 1.00284 1.20882 0.98235 0.91579 0.96865 0.92586 0.96853 0.95036 0.93202 0.88875 0.83730 0.81227 0.79916 0.84956 0.91679 0.87582 0.85832 0.89084 0.87480 0.94440 0.88707 0.90197 0.87647 0.94465 0.85011 0.87698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.40 13.96 21.45 0.30 -57.10 16 2 C 0.03 1.79 5.47 84.66 0.46 2.25 16 3 Si 0.93 45.78 27.38 68.60 1.88 47.66 16 4 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.27 -13.01 6.68 99.48 0.66 -12.35 16 7 C -0.54 -29.63 7.68 25.60 0.20 -29.44 16 8 H 0.05 2.96 6.38 -2.91 -0.02 2.94 16 9 C 0.17 8.59 3.94 85.55 0.34 8.93 16 10 N -0.54 -23.09 4.76 -917.75 -4.36 -27.45 16 11 C 0.11 4.05 4.95 85.56 0.42 4.48 16 12 C -0.12 -4.47 4.90 -19.77 -0.10 -4.56 16 13 C -0.06 -1.91 9.88 22.47 0.22 -1.68 16 14 C -0.17 -4.17 10.11 22.36 0.23 -3.95 16 15 C 0.08 2.30 11.18 84.68 0.95 3.25 16 16 N -0.52 -19.19 10.36 -195.84 -2.03 -21.22 16 17 C 0.10 3.85 9.74 84.67 0.82 4.68 16 18 C 0.33 13.74 6.11 170.80 1.04 14.79 16 19 N -0.44 -17.86 3.84 -488.02 -1.88 -19.73 16 20 N -0.30 -11.56 11.25 -48.73 -0.55 -12.11 16 21 C 0.27 7.56 7.10 137.85 0.98 8.54 16 22 N -0.55 -15.33 2.76 -643.40 -1.77 -17.10 16 23 C 0.64 24.13 8.68 179.21 1.56 25.68 16 24 O -0.60 -25.28 17.58 -4.73 -0.08 -25.37 16 25 C 0.12 2.01 6.32 86.29 0.55 2.55 16 26 C -0.13 -1.71 5.63 29.99 0.17 -1.55 16 27 C -0.12 -1.00 5.19 29.32 0.15 -0.85 16 28 C -0.12 -1.49 5.57 30.03 0.17 -1.32 16 29 C -0.04 -0.56 5.81 30.17 0.18 -0.39 16 30 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 31 H 0.01 0.70 6.07 -2.39 -0.01 0.68 16 32 H 0.03 1.63 6.01 -2.39 -0.01 1.61 16 33 H 0.05 2.16 5.97 -2.39 -0.01 2.14 16 34 H 0.09 3.08 7.63 -2.39 -0.02 3.06 16 35 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 36 H 0.17 2.80 8.06 -2.91 -0.02 2.77 16 37 H 0.18 3.68 8.06 -2.91 -0.02 3.66 16 38 H 0.13 6.00 8.06 -2.91 -0.02 5.98 16 39 H 0.07 3.04 6.52 -2.38 -0.02 3.02 16 40 H 0.11 4.04 7.28 -2.39 -0.02 4.02 16 41 H 0.12 1.13 7.67 -2.39 -0.02 1.11 16 42 H 0.09 1.64 8.01 -2.39 -0.02 1.62 16 43 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 44 H 0.04 0.75 8.06 -2.39 -0.02 0.73 16 45 H 0.09 0.32 7.80 -2.39 -0.02 0.30 16 46 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.04 0.73 7.89 -2.39 -0.02 0.71 16 49 H 0.13 1.09 7.70 -2.39 -0.02 1.08 16 50 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -81.15 397.13 0.74 -80.40 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.91 Total: 20.64 kcal Atomic # 6 Polarization: 23.06 SS G_CDS: 8.33 Total: 31.39 kcal Atomic # 7 Polarization: -144.43 SS G_CDS: -10.29 Total: -154.72 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.08 Total: -25.37 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.88 Total: 47.66 kcal Total: -81.15 0.74 -80.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044894842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.895 kcal (2) G-P(sol) polarization free energy of solvation -81.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds