Wall clock time and date at job start Tue Mar 31 2020 05:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46956 * 110.99700 * 293.79427 * 11 10 9 13 13 C 1.53049 * 109.36630 * 176.81026 * 12 11 10 14 14 N 1.46963 * 109.36171 * 58.40184 * 13 12 11 15 15 C 1.46896 * 111.00029 * 176.81114 * 14 13 12 16 16 C 1.50700 * 109.47199 * 293.80266 * 15 14 13 17 17 C 1.33732 * 122.07818 * 95.00015 * 16 15 14 18 18 S 1.76255 * 108.21835 * 180.02562 * 17 16 15 19 19 C 1.76178 * 89.83735 * 359.97438 * 18 17 16 20 20 C 1.47865 * 125.47079 * 179.97438 * 19 18 17 21 21 C 1.39551 * 120.14092 * 179.74392 * 20 19 18 22 22 C 1.37966 * 119.85192 * 179.78801 * 21 20 19 23 23 C 1.38349 * 120.14782 * 0.47405 * 22 21 20 24 24 C 1.38358 * 120.28418 * 359.78241 * 23 22 21 25 25 C 1.37961 * 120.14139 * 359.97438 * 24 23 22 26 26 N 1.30225 * 109.05253 * 359.73867 * 19 18 17 27 27 C 1.46948 * 110.88098 * 300.68193 * 14 13 12 28 28 C 1.46961 * 111.00124 * 170.00033 * 11 10 9 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 33 33 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 34 34 H 1.08999 * 109.49195 * 296.77993 * 12 11 10 35 35 H 1.09002 * 109.48564 * 56.84551 * 12 11 10 36 36 H 1.09000 * 109.49067 * 298.43979 * 13 12 11 37 37 H 1.09001 * 109.49268 * 178.36932 * 13 12 11 38 38 H 1.09003 * 109.47316 * 53.80231 * 15 14 13 39 39 H 1.08995 * 109.47173 * 173.80324 * 15 14 13 40 40 H 1.08003 * 125.88948 * 0.03729 * 17 16 15 41 41 H 1.07998 * 120.07179 * 0.02776 * 21 20 19 42 42 H 1.08008 * 119.92372 * 180.23222 * 22 21 20 43 43 H 1.07996 * 119.85968 * 179.76511 * 23 22 21 44 44 H 1.07994 * 119.92760 * 180.02562 * 24 23 22 45 45 H 1.08002 * 120.07288 * 180.02562 * 25 24 23 46 46 H 1.08999 * 109.48998 * 299.35229 * 27 14 13 47 47 H 1.09002 * 109.48626 * 179.28754 * 27 14 13 48 48 H 1.09001 * 109.48531 * 303.15255 * 28 11 10 49 49 H 1.09000 * 109.48854 * 63.21719 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 0.7673 -5.1195 1.2374 13 6 -0.0453 -6.4140 1.1593 14 7 0.8616 -7.5446 0.9160 15 6 0.1270 -8.8168 0.9098 16 6 -0.4182 -9.0888 2.2881 17 6 -1.6641 -8.7520 2.6383 18 16 -1.9144 -9.2336 4.3152 19 6 -0.2683 -9.8584 4.3762 20 6 0.3658 -10.4925 5.5520 21 6 1.6803 -10.9546 5.4751 22 6 2.2675 -11.5413 6.5771 23 6 1.5529 -11.6809 7.7535 24 6 0.2475 -11.2296 7.8346 25 6 -0.3497 -10.6366 6.7414 26 7 0.2986 -9.6767 3.2180 27 6 1.6048 -7.3594 -0.3380 28 6 2.4174 -6.0649 -0.2600 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 2.8718 -3.6005 -0.9002 33 1 2.8717 -3.6084 0.8798 34 1 1.4682 -5.1797 2.0700 35 1 0.0938 -4.2759 1.3889 36 1 -0.7649 -6.3431 0.3437 37 1 -0.5748 -6.5684 2.0995 38 1 -0.6968 -8.7572 0.1985 39 1 0.8000 -9.6235 0.6195 40 1 -2.3915 -8.2686 2.0030 41 1 2.2379 -10.8497 4.5562 42 1 3.2861 -11.8960 6.5200 43 1 2.0159 -12.1443 8.6121 44 1 -0.3048 -11.3411 8.7559 45 1 -1.3686 -10.2844 6.8061 46 1 0.9039 -7.2992 -1.1706 47 1 2.2783 -8.2030 -0.4895 48 1 2.9469 -5.9105 -1.2002 49 1 3.1370 -6.1358 0.5556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054993157.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:16 Heat of formation + Delta-G solvation = 81.540404 kcal Electronic energy + Delta-G solvation = -28061.265104 eV Core-core repulsion = 24307.792390 eV Total energy + Delta-G solvation = -3753.472714 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 357.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.32777 -39.33940 -38.60858 -35.60786 -33.18216 -32.59688 -31.37148 -30.82870 -30.33007 -29.41128 -27.51715 -25.59676 -24.53830 -23.45785 -23.12279 -22.99370 -21.64628 -20.30416 -19.46686 -19.37849 -18.25222 -17.09351 -16.59139 -16.06098 -15.91791 -15.23815 -15.17218 -14.86036 -14.65475 -14.58288 -14.49666 -14.22100 -13.87772 -13.80795 -13.67966 -13.39738 -13.11752 -12.97636 -12.71276 -12.25043 -12.10413 -11.87099 -11.71877 -11.53900 -11.42252 -11.13995 -11.02374 -10.92227 -10.74832 -10.53544 -10.43129 -10.11012 -9.90766 -9.80739 -9.47561 -9.34686 -9.31944 -9.10184 -8.47977 -8.31775 -8.27295 -7.68771 -5.98405 -4.00450 -0.03034 1.01495 1.04524 1.22529 1.44516 2.58633 3.33025 3.39044 3.42502 3.48106 3.61758 4.04123 4.39687 4.47207 4.53424 4.57374 4.60731 4.75552 4.90985 5.00937 5.04670 5.09574 5.13537 5.28382 5.33533 5.37343 5.39900 5.46573 5.57489 5.62812 5.66047 5.68405 5.79807 5.82584 5.95858 6.05361 6.10084 6.13332 6.15701 6.20721 6.33383 6.43658 6.52683 6.53691 6.98680 7.00453 7.08854 7.52855 7.54375 7.59898 7.81870 7.91481 8.09750 8.45345 9.06678 9.62969 11.12987 Molecular weight = 357.16amu Principal moments of inertia in cm(-1) A = 0.012864 B = 0.001892 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.153395 B =14794.085287 C =15231.536270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.028 3.972 10 C 0.064 3.936 11 N -0.540 5.540 12 C 0.059 3.941 13 C 0.057 3.943 14 N -0.532 5.532 15 C 0.127 3.873 16 C 0.086 3.914 17 C -0.241 4.241 18 S 0.084 5.916 19 C 0.111 3.889 20 C -0.024 4.024 21 C -0.071 4.071 22 C -0.121 4.121 23 C -0.106 4.106 24 C -0.119 4.119 25 C -0.099 4.099 26 N -0.442 5.442 27 C 0.063 3.937 28 C 0.056 3.944 29 H 0.260 0.740 30 H 0.016 0.984 31 H 0.024 0.976 32 H 0.060 0.940 33 H 0.020 0.980 34 H 0.034 0.966 35 H 0.090 0.910 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.091 0.909 40 H 0.179 0.821 41 H 0.137 0.863 42 H 0.129 0.871 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.124 0.876 46 H 0.043 0.957 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.226 -27.936 11.990 30.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.063 4.063 11 N -0.265 5.265 12 C -0.069 4.069 13 C -0.071 4.071 14 N -0.258 5.258 15 C -0.003 4.003 16 C -0.048 4.048 17 C -0.381 4.381 18 S 0.341 5.659 19 C -0.164 4.164 20 C -0.028 4.028 21 C -0.092 4.092 22 C -0.140 4.140 23 C -0.125 4.125 24 C -0.137 4.137 25 C -0.119 4.119 26 N -0.155 5.155 27 C -0.065 4.065 28 C -0.072 4.072 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.052 0.948 35 H 0.108 0.892 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.109 0.891 40 H 0.196 0.804 41 H 0.155 0.845 42 H 0.147 0.853 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.142 0.858 46 H 0.061 0.939 47 H 0.093 0.907 48 H 0.094 0.906 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.751 -27.875 12.553 30.695 hybrid contribution 0.613 1.295 -0.815 1.649 sum -2.138 -26.580 11.738 29.135 Atomic orbital electron populations 1.69974 1.06012 1.26527 1.50762 1.24998 0.94844 0.99180 0.95350 0.86592 0.79822 0.83482 0.78086 1.20660 1.21243 1.19928 1.21201 0.92990 0.91065 1.50720 0.92801 1.19088 0.93981 0.90144 0.97676 1.22315 0.96722 0.88286 0.98976 1.62279 1.27665 1.02579 1.33980 1.22127 0.97480 0.96497 0.90820 1.22257 0.94216 0.90055 1.00569 1.62081 1.27399 1.01082 1.35206 1.20575 0.97214 0.93398 0.89131 1.19946 0.89658 0.98258 0.96904 1.26889 1.01970 1.10565 0.98635 1.84843 1.15771 1.55643 1.09642 1.25797 0.93144 1.02279 0.95154 1.17840 0.94444 1.00364 0.90116 1.21336 0.93303 0.95255 0.99298 1.21181 1.00310 0.99588 0.92879 1.21339 0.94489 0.98720 0.97984 1.21033 0.95464 0.98915 0.98318 1.21168 0.99621 0.98988 0.92151 1.66283 1.34808 1.15108 0.99324 1.22146 0.96881 0.97806 0.89699 1.22108 0.94223 0.90177 1.00740 0.93038 0.96565 0.95795 0.92107 0.96170 0.94811 0.89227 0.93922 0.90964 0.92976 0.89096 0.80366 0.84541 0.85317 0.85623 0.85353 0.85780 0.93923 0.90656 0.90581 0.94650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.09 13.29 55.43 0.74 -26.35 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.75 4.91 -27.88 -0.14 0.62 16 10 C 0.06 1.39 4.90 -3.83 -0.02 1.37 16 11 N -0.54 -10.18 4.71 -234.47 -1.10 -11.28 16 12 C 0.06 1.06 5.41 -3.77 -0.02 1.04 16 13 C 0.06 0.84 5.34 -3.76 -0.02 0.82 16 14 N -0.53 -7.30 4.70 -235.92 -1.11 -8.41 16 15 C 0.13 1.45 5.38 -4.98 -0.03 1.43 16 16 C 0.09 1.03 5.54 -84.40 -0.47 0.56 16 17 C -0.24 -2.53 9.72 29.15 0.28 -2.25 16 18 S 0.08 0.82 22.40 -107.50 -2.41 -1.59 16 19 C 0.11 1.28 7.35 -14.29 -0.11 1.17 16 20 C -0.02 -0.24 5.87 -104.98 -0.62 -0.86 16 21 C -0.07 -0.67 9.68 -39.19 -0.38 -1.05 16 22 C -0.12 -0.90 10.03 -39.64 -0.40 -1.29 16 23 C -0.11 -0.69 10.04 -39.50 -0.40 -1.08 16 24 C -0.12 -0.80 10.03 -39.64 -0.40 -1.20 16 25 C -0.10 -0.81 9.61 -39.19 -0.38 -1.19 16 26 N -0.44 -5.71 10.11 -7.55 -0.08 -5.78 16 27 C 0.06 0.82 5.61 -3.77 -0.02 0.80 16 28 C 0.06 0.87 5.61 -3.77 -0.02 0.85 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.02 0.45 6.49 -51.93 -0.34 0.11 16 31 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 1.30 8.03 -51.93 -0.42 0.88 16 33 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 1.77 6.34 -51.93 -0.33 1.44 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 1.03 6.28 -51.93 -0.33 0.70 16 38 H 0.05 0.53 8.06 -51.93 -0.42 0.11 16 39 H 0.09 0.98 8.03 -51.93 -0.42 0.56 16 40 H 0.18 1.55 8.06 -52.48 -0.42 1.12 16 41 H 0.14 1.34 7.82 -52.49 -0.41 0.93 16 42 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 43 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 44 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 45 H 0.12 0.86 7.30 -52.49 -0.38 0.47 16 46 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 48 H 0.08 1.11 8.07 -51.93 -0.42 0.69 16 49 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 407.27 15.07 6.14 6.14 Total: -1.00 -32.35 407.27 -14.02 -46.37 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -7.64 Total: -2.02 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -3.53 Total: -13.95 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -1.55 Total: -51.83 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.41 Total: -1.59 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.35 -14.02 -46.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054993157.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.911 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds