Wall clock time and date at job start Tue Mar 31 2020 05:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46956 * 110.99700 * 293.79427 * 11 10 9 13 13 C 1.53049 * 109.36630 * 176.81026 * 12 11 10 14 14 N 1.46963 * 109.36171 * 58.40184 * 13 12 11 15 15 C 1.46896 * 111.00029 * 176.81114 * 14 13 12 16 16 C 1.50700 * 109.47199 * 293.80266 * 15 14 13 17 17 C 1.33732 * 122.07818 * 95.00015 * 16 15 14 18 18 S 1.76255 * 108.21835 * 180.02562 * 17 16 15 19 19 C 1.76178 * 89.83735 * 359.97438 * 18 17 16 20 20 C 1.47865 * 125.47079 * 179.97438 * 19 18 17 21 21 C 1.39551 * 120.14092 * 179.74392 * 20 19 18 22 22 C 1.37966 * 119.85192 * 179.78801 * 21 20 19 23 23 C 1.38349 * 120.14782 * 0.47405 * 22 21 20 24 24 C 1.38358 * 120.28418 * 359.78241 * 23 22 21 25 25 C 1.37961 * 120.14139 * 359.97438 * 24 23 22 26 26 N 1.30225 * 109.05253 * 359.73867 * 19 18 17 27 27 C 1.46948 * 110.88098 * 300.68193 * 14 13 12 28 28 C 1.46961 * 111.00124 * 170.00033 * 11 10 9 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 33 33 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 34 34 H 1.08999 * 109.49195 * 296.77993 * 12 11 10 35 35 H 1.09002 * 109.48564 * 56.84551 * 12 11 10 36 36 H 1.09000 * 109.49067 * 298.43979 * 13 12 11 37 37 H 1.09001 * 109.49268 * 178.36932 * 13 12 11 38 38 H 1.09003 * 109.47316 * 53.80231 * 15 14 13 39 39 H 1.08995 * 109.47173 * 173.80324 * 15 14 13 40 40 H 1.08003 * 125.88948 * 0.03729 * 17 16 15 41 41 H 1.07998 * 120.07179 * 0.02776 * 21 20 19 42 42 H 1.08008 * 119.92372 * 180.23222 * 22 21 20 43 43 H 1.07996 * 119.85968 * 179.76511 * 23 22 21 44 44 H 1.07994 * 119.92760 * 180.02562 * 24 23 22 45 45 H 1.08002 * 120.07288 * 180.02562 * 25 24 23 46 46 H 1.08999 * 109.48998 * 299.35229 * 27 14 13 47 47 H 1.09002 * 109.48626 * 179.28754 * 27 14 13 48 48 H 1.09001 * 109.48531 * 303.15255 * 28 11 10 49 49 H 1.09000 * 109.48854 * 63.21719 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 0.7673 -5.1195 1.2374 13 6 -0.0453 -6.4140 1.1593 14 7 0.8616 -7.5446 0.9160 15 6 0.1270 -8.8168 0.9098 16 6 -0.4182 -9.0888 2.2881 17 6 -1.6641 -8.7520 2.6383 18 16 -1.9144 -9.2336 4.3152 19 6 -0.2683 -9.8584 4.3762 20 6 0.3658 -10.4925 5.5520 21 6 1.6803 -10.9546 5.4751 22 6 2.2675 -11.5413 6.5771 23 6 1.5529 -11.6809 7.7535 24 6 0.2475 -11.2296 7.8346 25 6 -0.3497 -10.6366 6.7414 26 7 0.2986 -9.6767 3.2180 27 6 1.6048 -7.3594 -0.3380 28 6 2.4174 -6.0649 -0.2600 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 2.8718 -3.6005 -0.9002 33 1 2.8717 -3.6084 0.8798 34 1 1.4682 -5.1797 2.0700 35 1 0.0938 -4.2759 1.3889 36 1 -0.7649 -6.3431 0.3437 37 1 -0.5748 -6.5684 2.0995 38 1 -0.6968 -8.7572 0.1985 39 1 0.8000 -9.6235 0.6195 40 1 -2.3915 -8.2686 2.0030 41 1 2.2379 -10.8497 4.5562 42 1 3.2861 -11.8960 6.5200 43 1 2.0159 -12.1443 8.6121 44 1 -0.3048 -11.3411 8.7559 45 1 -1.3686 -10.2844 6.8061 46 1 0.9039 -7.2992 -1.1706 47 1 2.2783 -8.2030 -0.4895 48 1 2.9469 -5.9105 -1.2002 49 1 3.1370 -6.1358 0.5556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054993157.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:15 Heat of formation + Delta-G solvation = 61.720339 kcal Electronic energy + Delta-G solvation = -28062.124566 eV Core-core repulsion = 24307.792390 eV Total energy + Delta-G solvation = -3754.332176 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 357.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.18873 -40.21397 -39.59676 -36.99973 -35.09488 -33.54404 -32.14697 -31.92366 -31.79062 -30.53150 -28.78036 -26.81249 -25.80580 -24.85879 -24.43441 -23.61293 -22.39094 -22.09015 -20.76713 -20.20857 -19.01350 -18.63004 -17.77659 -17.25078 -16.70486 -16.58883 -16.24878 -16.04471 -15.83146 -15.80606 -15.66279 -15.42542 -15.03357 -14.93342 -14.42011 -14.36548 -14.21839 -14.08647 -13.98230 -13.60765 -13.42182 -13.11624 -13.02322 -12.82005 -12.56979 -12.43692 -12.29165 -12.26156 -12.07059 -11.99975 -11.88369 -11.69008 -11.28564 -11.19401 -10.83259 -10.73009 -10.55018 -10.24843 -9.92815 -9.43068 -9.23324 -9.11580 -8.21221 -6.32458 -0.77418 0.26131 0.43811 0.54222 0.64029 1.39074 1.40811 1.51793 1.75969 2.39175 2.84034 2.90124 2.99642 3.03986 3.12025 3.71181 3.87800 3.97660 4.03970 4.07934 4.11133 4.16288 4.20469 4.28428 4.32045 4.40605 4.46586 4.49660 4.53716 4.54845 4.58624 4.65991 4.76193 4.80213 4.88699 4.89682 4.95217 5.02106 5.04769 5.08737 5.11277 5.43188 5.47352 5.49642 5.55865 5.63313 5.74703 5.94031 5.96309 5.98349 6.11265 6.27024 6.30839 6.72342 6.84008 7.36336 8.90870 Molecular weight = 357.16amu Principal moments of inertia in cm(-1) A = 0.012864 B = 0.001892 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.153395 B =14794.085287 C =15231.536270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.038 3.962 10 C 0.080 3.920 11 N -0.547 5.547 12 C 0.063 3.937 13 C 0.071 3.929 14 N -0.544 5.544 15 C 0.132 3.868 16 C 0.068 3.932 17 C -0.247 4.247 18 S 0.113 5.887 19 C 0.099 3.901 20 C -0.050 4.050 21 C -0.089 4.089 22 C -0.125 4.125 23 C -0.102 4.102 24 C -0.119 4.119 25 C -0.106 4.106 26 N -0.470 5.470 27 C 0.068 3.932 28 C 0.055 3.945 29 H 0.264 0.736 30 H -0.008 1.008 31 H -0.006 1.006 32 H 0.067 0.933 33 H 0.014 0.986 34 H 0.021 0.979 35 H 0.062 0.938 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.195 0.805 41 H 0.123 0.877 42 H 0.148 0.852 43 H 0.155 0.845 44 H 0.156 0.844 45 H 0.133 0.867 46 H 0.046 0.954 47 H 0.102 0.898 48 H 0.089 0.911 49 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.571 -29.109 12.946 31.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.077 0.923 9 C 0.001 3.999 10 C -0.048 4.048 11 N -0.272 5.272 12 C -0.066 4.066 13 C -0.057 4.057 14 N -0.269 5.269 15 C 0.002 3.998 16 C -0.066 4.066 17 C -0.387 4.387 18 S 0.370 5.630 19 C -0.176 4.176 20 C -0.054 4.054 21 C -0.110 4.110 22 C -0.143 4.143 23 C -0.121 4.121 24 C -0.137 4.137 25 C -0.126 4.126 26 N -0.184 5.184 27 C -0.059 4.059 28 C -0.073 4.073 29 H 0.073 0.927 30 H 0.010 0.990 31 H 0.012 0.988 32 H 0.086 0.914 33 H 0.033 0.967 34 H 0.040 0.960 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.117 0.883 40 H 0.212 0.788 41 H 0.141 0.859 42 H 0.165 0.835 43 H 0.173 0.827 44 H 0.174 0.826 45 H 0.151 0.849 46 H 0.064 0.936 47 H 0.120 0.880 48 H 0.107 0.893 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.093 -29.077 13.507 32.130 hybrid contribution 0.387 1.579 -1.016 1.917 sum -1.706 -27.499 12.491 30.251 Atomic orbital electron populations 1.70111 1.07779 1.27767 1.51378 1.25974 0.95799 1.03337 0.94621 0.85418 0.78577 0.78294 0.78567 1.19608 1.20656 1.18863 1.21617 0.93490 0.92286 1.50957 0.92272 1.18900 0.94148 0.91878 0.94993 1.21966 0.95407 0.88438 0.98951 1.62222 1.28217 1.02517 1.34292 1.22042 0.96971 0.97444 0.90132 1.22036 0.93722 0.88969 1.00948 1.62038 1.27650 1.01506 1.35707 1.20596 0.97705 0.92085 0.89410 1.20083 0.90244 0.99068 0.97171 1.27152 1.01963 1.10200 0.99359 1.84655 1.14487 1.54860 1.08953 1.26153 0.94024 1.02139 0.95269 1.18042 0.95097 1.01686 0.90542 1.21370 0.93418 0.96519 0.99726 1.21451 1.01278 0.98997 0.92604 1.21732 0.94349 0.97653 0.98383 1.21414 0.95793 0.97746 0.98743 1.21366 1.00059 0.99208 0.92009 1.66288 1.35814 1.16252 1.00073 1.22139 0.97065 0.97187 0.89530 1.22229 0.94021 0.89956 1.01048 0.92745 0.98953 0.98785 0.91429 0.96725 0.96040 0.91958 0.93805 0.90445 0.91367 0.88344 0.78769 0.85924 0.83467 0.82712 0.82647 0.84939 0.93566 0.88008 0.89278 0.95269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.61 13.29 21.45 0.28 -57.32 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.55 -31.90 9.11 25.60 0.23 -31.66 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 9 C 0.04 2.11 4.91 29.85 0.15 2.25 16 10 C 0.08 3.56 4.90 86.30 0.42 3.98 16 11 N -0.55 -20.96 4.71 -895.72 -4.22 -25.18 16 12 C 0.06 2.34 5.41 86.31 0.47 2.80 16 13 C 0.07 2.12 5.34 86.31 0.46 2.58 16 14 N -0.54 -14.43 4.70 -900.31 -4.23 -18.66 16 15 C 0.13 2.86 5.38 85.56 0.46 3.32 16 16 C 0.07 1.59 5.54 41.61 0.23 1.83 16 17 C -0.25 -5.03 9.72 66.80 0.65 -4.38 16 18 S 0.11 2.15 22.40 -56.49 -1.27 0.88 16 19 C 0.10 2.29 7.35 87.48 0.64 2.93 16 20 C -0.05 -1.01 5.87 -20.10 -0.12 -1.13 16 21 C -0.09 -1.70 9.68 22.52 0.22 -1.49 16 22 C -0.13 -1.71 10.03 22.23 0.22 -1.48 16 23 C -0.10 -1.08 10.04 22.32 0.22 -0.85 16 24 C -0.12 -1.34 10.03 22.23 0.22 -1.11 16 25 C -0.11 -1.64 9.61 22.52 0.22 -1.42 16 26 N -0.47 -12.28 10.11 -177.79 -1.80 -14.07 16 27 C 0.07 1.69 5.61 86.31 0.48 2.17 16 28 C 0.06 1.68 5.61 86.31 0.48 2.16 16 29 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 30 H -0.01 -0.46 6.49 -2.38 -0.02 -0.48 16 31 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 32 H 0.07 2.89 8.03 -2.38 -0.02 2.87 16 33 H 0.01 0.66 8.12 -2.39 -0.02 0.64 16 34 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 2.63 6.34 -2.39 -0.02 2.61 16 36 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.08 2.21 6.28 -2.39 -0.01 2.19 16 38 H 0.07 1.26 8.06 -2.39 -0.02 1.24 16 39 H 0.10 1.98 8.03 -2.39 -0.02 1.96 16 40 H 0.20 3.14 8.06 -2.91 -0.02 3.12 16 41 H 0.12 2.58 7.82 -2.91 -0.02 2.56 16 42 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 43 H 0.16 0.71 8.06 -2.91 -0.02 0.68 16 44 H 0.16 0.85 8.06 -2.91 -0.02 0.82 16 45 H 0.13 1.70 7.30 -2.91 -0.02 1.68 16 46 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.10 2.02 8.07 -2.39 -0.02 2.00 16 48 H 0.09 2.46 8.07 -2.39 -0.02 2.44 16 49 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -71.55 407.27 -2.14 -73.69 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.93 Total: 12.61 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: 6.13 Total: -19.00 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -9.96 Total: -115.23 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -1.27 Total: 0.88 kcal Total: -71.55 -2.14 -73.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054993157.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.408 kcal (2) G-P(sol) polarization free energy of solvation -71.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds