Wall clock time and date at job start Tue Mar 31 2020 05:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46852 * 2 1 4 4 C 1.52999 * 109.47001 * 119.99353 * 2 1 3 5 5 N 1.46501 * 109.46700 * 176.59658 * 4 2 1 6 6 C 1.46499 * 120.00439 * 274.90589 * 5 4 2 7 7 C 1.50696 * 109.47141 * 270.00599 * 6 5 4 8 8 H 1.08007 * 120.00266 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00286 * 179.97438 * 7 6 5 10 10 N 1.31521 * 119.99383 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00342 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47230 * 90.00156 * 11 9 7 13 13 H 1.48509 * 109.47098 * 210.00005 * 11 9 7 14 14 H 1.48495 * 109.47196 * 329.99898 * 11 9 7 15 15 C 1.34784 * 119.99553 * 94.91441 * 5 4 2 16 16 O 1.21691 * 119.99492 * 185.02997 * 15 5 4 17 17 C 1.46651 * 120.00062 * 5.02288 * 15 5 4 18 18 C 1.36547 * 125.98748 * 174.24490 * 17 15 5 19 19 C 1.40364 * 106.70948 * 180.02562 * 18 17 15 20 20 C 1.35126 * 107.11487 * 359.97438 * 19 18 17 21 21 C 1.50699 * 125.61754 * 180.02562 * 20 19 18 22 22 O 1.42898 * 109.47425 * 89.99928 * 21 20 19 23 23 C 1.35895 * 117.00229 * 180.02562 * 22 21 20 24 24 C 1.38729 * 120.05769 * 359.72736 * 23 22 21 25 25 C 1.38141 * 119.94679 * 179.74614 * 24 23 22 26 26 C 1.38267 * 120.05416 * 0.50520 * 25 24 23 27 27 C 1.38267 * 120.11102 * 359.77213 * 26 25 24 28 28 C 1.38137 * 120.05355 * 359.97438 * 27 26 25 29 29 O 1.33934 * 108.76693 * 0.26701 * 20 19 18 30 30 H 1.08995 * 109.47569 * 300.00239 * 1 2 3 31 31 H 1.09003 * 109.47198 * 60.00769 * 1 2 3 32 32 H 1.09005 * 109.46787 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47515 * 240.00268 * 2 1 3 34 34 H 1.09007 * 109.46891 * 304.02590 * 3 2 1 35 35 H 1.08997 * 109.47290 * 64.02216 * 3 2 1 36 36 H 1.09000 * 109.46817 * 184.02939 * 3 2 1 37 37 H 1.08997 * 109.46681 * 56.60212 * 4 2 1 38 38 H 1.08996 * 109.47256 * 296.60153 * 4 2 1 39 39 H 1.08998 * 109.46676 * 30.00319 * 6 5 4 40 40 H 1.08993 * 109.47042 * 150.00328 * 6 5 4 41 41 H 0.97002 * 119.99327 * 180.02562 * 10 9 7 42 42 H 1.07999 * 126.64421 * 359.97438 * 18 17 15 43 43 H 1.07999 * 126.44242 * 180.02562 * 19 18 17 44 44 H 1.09002 * 109.47117 * 210.00171 * 21 20 19 45 45 H 1.09000 * 109.47181 * 330.00032 * 21 20 19 46 46 H 1.08000 * 120.02797 * 359.97438 * 24 23 22 47 47 H 1.08000 * 119.97741 * 180.28014 * 25 24 23 48 48 H 1.08006 * 119.94369 * 179.74604 * 26 25 24 49 49 H 1.08000 * 119.97077 * 179.97438 * 27 26 25 50 50 H 1.08003 * 120.02500 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5027 -0.7925 1.2090 6 6 4.1633 -1.8811 0.4847 7 6 4.3837 -3.0440 1.4175 8 1 4.0641 -2.9785 2.4471 9 6 4.9935 -4.1915 0.9566 10 7 5.3822 -4.2714 -0.2973 11 14 5.2674 -5.6327 2.1131 12 1 4.0901 -6.5365 2.0653 13 1 6.4815 -6.3789 1.6952 14 1 5.4485 -5.1285 3.4981 15 6 4.2406 0.1434 1.8384 16 8 5.4526 0.1373 1.7293 17 6 3.5829 1.1690 2.6546 18 6 4.2103 2.1019 3.4296 19 6 3.2020 2.8723 4.0297 20 6 2.0184 2.3824 3.5998 21 6 0.6592 2.9048 3.9882 22 8 0.2575 3.9197 3.0659 23 6 -0.9536 4.4994 3.2753 24 6 -1.7418 4.0958 4.3432 25 6 -2.9703 4.6903 4.5570 26 6 -3.4191 5.6796 3.7017 27 6 -2.6379 6.0797 2.6332 28 6 -1.4065 5.4919 2.4182 29 8 2.2519 1.3527 2.7757 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6188 1.9768 -0.8518 35 1 1.7367 1.9352 0.9238 36 1 3.1275 1.4434 -0.0722 37 1 1.6277 -1.7296 1.2803 38 1 1.7272 -0.1732 2.1382 39 1 3.5349 -2.1973 -0.3479 40 1 5.1236 -1.5338 0.1037 41 1 5.8108 -5.0789 -0.6216 42 1 5.2759 2.2230 3.5568 43 1 3.3454 3.7012 4.7070 44 1 -0.0631 2.0888 3.9678 45 1 0.7049 3.3246 4.9931 46 1 -1.3937 3.3200 5.0090 47 1 -3.5823 4.3796 5.3909 48 1 -4.3816 6.1403 3.8681 49 1 -2.9909 6.8523 1.9663 50 1 -0.7968 5.8045 1.5833 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058113706.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:21 Heat of formation + Delta-G solvation = -24.795577 kcal Electronic energy + Delta-G solvation = -32213.849524 eV Core-core repulsion = 27980.720114 eV Total energy + Delta-G solvation = -4233.129410 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.75985 -40.38868 -38.97447 -37.72548 -36.42837 -33.73034 -33.17744 -32.30733 -31.78961 -31.16539 -29.87206 -28.07328 -26.92976 -26.61412 -25.52337 -23.54983 -22.91389 -22.43243 -21.65359 -21.08417 -19.93009 -19.50994 -18.69936 -17.10706 -16.78377 -16.51442 -16.31978 -16.13621 -16.09076 -15.51092 -15.21710 -14.70902 -14.41959 -14.39047 -14.12980 -13.76913 -13.69916 -13.48799 -13.18915 -13.05599 -13.02041 -12.92150 -12.32769 -12.29523 -12.20735 -11.94223 -11.87250 -11.53004 -11.37013 -11.31910 -11.20770 -10.97323 -10.87677 -10.67054 -10.57173 -10.27705 -10.09954 -9.91529 -9.67029 -9.38954 -9.35602 -8.57911 -8.55274 -8.46480 -7.72405 -6.07535 -4.12797 0.98787 1.10444 1.11648 2.21109 2.58899 3.23775 3.28622 3.35297 3.39483 3.45103 3.72610 3.82586 4.32009 4.42273 4.48093 4.56973 4.66640 4.71838 4.81566 4.93852 5.02964 5.04635 5.14546 5.18494 5.22900 5.27010 5.30507 5.44959 5.61103 5.65246 5.71520 5.83384 5.86022 5.90519 5.95020 6.03527 6.05574 6.08885 6.18428 6.19014 6.29516 6.34260 6.39984 6.40942 6.55953 6.69579 6.89212 7.04729 7.09263 7.36905 7.45488 7.88179 8.17600 8.26381 8.75364 8.94448 9.52160 11.00482 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.015911 B = 0.002392 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.405287 B =11703.761833 C =12134.939456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 C -0.149 4.149 4 C 0.103 3.897 5 N -0.579 5.579 6 C 0.245 3.755 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.899 3.101 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.585 3.415 16 O -0.520 6.520 17 C -0.030 4.030 18 C -0.147 4.147 19 C -0.177 4.177 20 C -0.030 4.030 21 C 0.145 3.855 22 O -0.307 6.307 23 C 0.133 3.867 24 C -0.211 4.211 25 C -0.080 4.080 26 C -0.161 4.161 27 C -0.081 4.081 28 C -0.150 4.150 29 O -0.139 6.139 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.037 0.963 40 H 0.047 0.953 41 H 0.264 0.736 42 H 0.160 0.840 43 H 0.153 0.847 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.129 0.871 47 H 0.124 0.876 48 H 0.122 0.878 49 H 0.129 0.871 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.828 19.551 8.319 27.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.131 4.131 3 C -0.206 4.206 4 C -0.020 4.020 5 N -0.308 5.308 6 C 0.127 3.873 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.727 3.273 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.199 1.199 15 C 0.370 3.630 16 O -0.398 6.398 17 C -0.082 4.082 18 C -0.167 4.167 19 C -0.196 4.196 20 C -0.081 4.081 21 C 0.070 3.930 22 O -0.221 6.221 23 C 0.088 3.912 24 C -0.230 4.230 25 C -0.098 4.098 26 C -0.179 4.179 27 C -0.099 4.099 28 C -0.169 4.169 29 O -0.036 6.036 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.178 0.822 43 H 0.171 0.829 44 H 0.100 0.900 45 H 0.112 0.888 46 H 0.147 0.853 47 H 0.142 0.858 48 H 0.140 0.860 49 H 0.146 0.854 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.160 19.215 7.795 26.915 hybrid contribution 0.186 -0.902 0.854 1.256 sum -16.974 18.313 8.649 26.425 Atomic orbital electron populations 1.21719 0.94985 1.01580 1.01394 1.21470 0.95467 0.96681 0.99451 1.21985 1.00958 0.95945 1.01704 1.21984 0.80713 1.01439 0.97861 1.48187 1.06059 1.26168 1.50377 1.19387 0.93846 0.82536 0.91544 1.21408 1.39615 0.98771 0.97023 0.92373 1.24930 0.95171 0.98624 0.95282 1.69937 1.40386 1.28347 1.14454 0.86480 0.77718 0.82059 0.81085 1.20601 1.21030 1.19866 1.16703 0.86285 0.80048 0.79923 1.90856 1.12348 1.73643 1.62963 1.22858 0.79770 1.01660 1.03956 1.21907 1.01215 0.95450 0.98138 1.21552 0.91023 1.02495 1.04545 1.21949 0.95571 0.92337 0.98252 1.20858 0.89998 0.90046 0.92088 1.86179 1.32408 1.51280 1.52204 1.19015 0.84631 0.93163 0.94367 1.21298 0.97137 1.04490 1.00043 1.20961 0.94980 0.95229 0.98627 1.21084 1.00682 0.99586 0.96577 1.20989 0.93157 0.98601 0.97128 1.20497 0.97613 0.97928 1.00873 1.84448 1.25333 1.41802 1.51977 0.92960 0.92840 0.92579 0.90671 0.93274 0.91909 0.93115 0.89948 0.89453 0.94509 0.93465 0.92639 0.82191 0.82896 0.89973 0.88758 0.85343 0.85762 0.85955 0.85355 0.85083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.19 37.16 0.34 -1.39 16 2 C -0.11 -1.72 3.14 -90.62 -0.28 -2.00 16 3 C -0.15 -2.29 7.80 37.16 0.29 -2.00 16 4 C 0.10 1.82 4.87 -4.04 -0.02 1.80 16 5 N -0.58 -12.65 2.24 -176.62 -0.40 -13.05 16 6 C 0.25 6.42 5.22 -5.20 -0.03 6.39 16 7 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 8 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 11 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 14 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 15 C 0.59 12.85 6.33 -12.86 -0.08 12.77 16 16 O -0.52 -13.27 16.42 5.20 0.09 -13.18 16 17 C -0.03 -0.52 5.90 -36.80 -0.22 -0.74 16 18 C -0.15 -2.25 10.63 -39.39 -0.42 -2.67 16 19 C -0.18 -2.17 10.77 -39.89 -0.43 -2.60 16 20 C -0.03 -0.37 6.91 -35.42 -0.24 -0.62 16 21 C 0.14 1.34 5.27 36.01 0.19 1.53 16 22 O -0.31 -3.36 10.12 -19.41 -0.20 -3.55 16 23 C 0.13 1.30 6.69 -39.22 -0.26 1.04 16 24 C -0.21 -1.71 9.04 -39.44 -0.36 -2.06 16 25 C -0.08 -0.57 10.04 -39.61 -0.40 -0.97 16 26 C -0.16 -1.12 10.04 -39.56 -0.40 -1.51 16 27 C -0.08 -0.59 10.04 -39.61 -0.40 -0.99 16 28 C -0.15 -1.35 9.99 -39.44 -0.39 -1.75 16 29 O -0.14 -2.10 4.44 5.00 0.02 -2.08 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 35 H 0.06 0.95 5.48 -51.93 -0.28 0.67 16 36 H 0.05 0.89 6.77 -51.93 -0.35 0.54 16 37 H 0.08 1.48 8.11 -51.93 -0.42 1.05 16 38 H 0.09 1.43 4.44 -53.06 -0.24 1.20 16 39 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 40 H 0.05 1.38 7.36 -51.93 -0.38 1.00 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.16 2.34 8.06 -52.49 -0.42 1.92 16 43 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 44 H 0.08 0.66 7.65 -51.93 -0.40 0.27 16 45 H 0.09 0.63 7.67 -51.93 -0.40 0.23 16 46 H 0.13 0.81 6.30 -52.49 -0.33 0.48 16 47 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 48 H 0.12 0.59 8.06 -52.48 -0.42 0.17 16 49 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 50 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 411.10 15.07 6.20 6.20 Total: -1.00 -33.08 411.10 -9.52 -42.60 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.42 Total: 1.29 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -3.53 Total: -9.38 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.34 Total: -38.65 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.09 Total: -18.81 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.08 -9.52 -42.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058113706.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.801 kcal (2) G-P(sol) polarization free energy of solvation -33.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds