Wall clock time and date at job start Tue Mar 31 2020 05:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46852 * 2 1 4 4 C 1.52999 * 109.47001 * 119.99353 * 2 1 3 5 5 N 1.46501 * 109.46700 * 176.59658 * 4 2 1 6 6 C 1.46499 * 120.00439 * 274.90589 * 5 4 2 7 7 C 1.50696 * 109.47141 * 270.00599 * 6 5 4 8 8 H 1.08007 * 120.00266 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00286 * 179.97438 * 7 6 5 10 10 N 1.31521 * 119.99383 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00342 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47230 * 90.00156 * 11 9 7 13 13 H 1.48509 * 109.47098 * 210.00005 * 11 9 7 14 14 H 1.48495 * 109.47196 * 329.99898 * 11 9 7 15 15 C 1.34784 * 119.99553 * 94.91441 * 5 4 2 16 16 O 1.21691 * 119.99492 * 185.02997 * 15 5 4 17 17 C 1.46651 * 120.00062 * 5.02288 * 15 5 4 18 18 C 1.36547 * 125.98748 * 174.24490 * 17 15 5 19 19 C 1.40364 * 106.70948 * 180.02562 * 18 17 15 20 20 C 1.35126 * 107.11487 * 359.97438 * 19 18 17 21 21 C 1.50699 * 125.61754 * 180.02562 * 20 19 18 22 22 O 1.42898 * 109.47425 * 89.99928 * 21 20 19 23 23 C 1.35895 * 117.00229 * 180.02562 * 22 21 20 24 24 C 1.38729 * 120.05769 * 359.72736 * 23 22 21 25 25 C 1.38141 * 119.94679 * 179.74614 * 24 23 22 26 26 C 1.38267 * 120.05416 * 0.50520 * 25 24 23 27 27 C 1.38267 * 120.11102 * 359.77213 * 26 25 24 28 28 C 1.38137 * 120.05355 * 359.97438 * 27 26 25 29 29 O 1.33934 * 108.76693 * 0.26701 * 20 19 18 30 30 H 1.08995 * 109.47569 * 300.00239 * 1 2 3 31 31 H 1.09003 * 109.47198 * 60.00769 * 1 2 3 32 32 H 1.09005 * 109.46787 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47515 * 240.00268 * 2 1 3 34 34 H 1.09007 * 109.46891 * 304.02590 * 3 2 1 35 35 H 1.08997 * 109.47290 * 64.02216 * 3 2 1 36 36 H 1.09000 * 109.46817 * 184.02939 * 3 2 1 37 37 H 1.08997 * 109.46681 * 56.60212 * 4 2 1 38 38 H 1.08996 * 109.47256 * 296.60153 * 4 2 1 39 39 H 1.08998 * 109.46676 * 30.00319 * 6 5 4 40 40 H 1.08993 * 109.47042 * 150.00328 * 6 5 4 41 41 H 0.97002 * 119.99327 * 180.02562 * 10 9 7 42 42 H 1.07999 * 126.64421 * 359.97438 * 18 17 15 43 43 H 1.07999 * 126.44242 * 180.02562 * 19 18 17 44 44 H 1.09002 * 109.47117 * 210.00171 * 21 20 19 45 45 H 1.09000 * 109.47181 * 330.00032 * 21 20 19 46 46 H 1.08000 * 120.02797 * 359.97438 * 24 23 22 47 47 H 1.08000 * 119.97741 * 180.28014 * 25 24 23 48 48 H 1.08006 * 119.94369 * 179.74604 * 26 25 24 49 49 H 1.08000 * 119.97077 * 179.97438 * 27 26 25 50 50 H 1.08003 * 120.02500 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5027 -0.7925 1.2090 6 6 4.1633 -1.8811 0.4847 7 6 4.3837 -3.0440 1.4175 8 1 4.0641 -2.9785 2.4471 9 6 4.9935 -4.1915 0.9566 10 7 5.3822 -4.2714 -0.2973 11 14 5.2674 -5.6327 2.1131 12 1 4.0901 -6.5365 2.0653 13 1 6.4815 -6.3789 1.6952 14 1 5.4485 -5.1285 3.4981 15 6 4.2406 0.1434 1.8384 16 8 5.4526 0.1373 1.7293 17 6 3.5829 1.1690 2.6546 18 6 4.2103 2.1019 3.4296 19 6 3.2020 2.8723 4.0297 20 6 2.0184 2.3824 3.5998 21 6 0.6592 2.9048 3.9882 22 8 0.2575 3.9197 3.0659 23 6 -0.9536 4.4994 3.2753 24 6 -1.7418 4.0958 4.3432 25 6 -2.9703 4.6903 4.5570 26 6 -3.4191 5.6796 3.7017 27 6 -2.6379 6.0797 2.6332 28 6 -1.4065 5.4919 2.4182 29 8 2.2519 1.3527 2.7757 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6188 1.9768 -0.8518 35 1 1.7367 1.9352 0.9238 36 1 3.1275 1.4434 -0.0722 37 1 1.6277 -1.7296 1.2803 38 1 1.7272 -0.1732 2.1382 39 1 3.5349 -2.1973 -0.3479 40 1 5.1236 -1.5338 0.1037 41 1 5.8108 -5.0789 -0.6216 42 1 5.2759 2.2230 3.5568 43 1 3.3454 3.7012 4.7070 44 1 -0.0631 2.0888 3.9678 45 1 0.7049 3.3246 4.9931 46 1 -1.3937 3.3200 5.0090 47 1 -3.5823 4.3796 5.3909 48 1 -4.3816 6.1403 3.8681 49 1 -2.9909 6.8523 1.9663 50 1 -0.7968 5.8045 1.5833 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058113706.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:20 Heat of formation + Delta-G solvation = -42.473038 kcal Electronic energy + Delta-G solvation = -32214.616076 eV Core-core repulsion = 27980.720114 eV Total energy + Delta-G solvation = -4233.895962 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.93663 -41.03878 -40.63275 -38.34168 -37.97375 -35.55695 -34.39395 -34.12128 -32.71204 -31.80119 -30.66447 -29.76065 -28.22992 -27.77079 -26.99954 -25.25853 -23.63306 -23.13748 -22.92626 -22.19933 -21.22726 -20.96932 -19.32298 -18.74785 -18.44285 -17.76908 -17.49515 -17.26736 -16.83615 -16.77181 -16.40415 -16.15685 -15.70431 -15.64825 -15.22565 -15.04488 -14.65076 -14.35184 -14.32713 -14.28923 -14.22078 -14.15096 -13.76785 -13.59133 -13.36649 -13.11000 -13.02752 -12.89276 -12.70787 -12.55830 -12.43242 -12.36476 -12.19413 -12.02717 -11.92412 -11.75606 -11.68584 -11.51443 -11.16373 -11.04671 -10.67124 -9.89413 -9.85656 -9.46769 -9.14639 -8.25937 -6.41503 -0.11503 0.45209 0.53818 1.11596 1.35316 1.38365 1.42366 1.49414 2.10415 2.20680 2.38074 2.49688 2.90445 3.03661 3.35625 3.64179 3.82088 3.88400 3.91971 3.96571 4.05777 4.10169 4.16242 4.18966 4.35087 4.39062 4.54234 4.55712 4.59308 4.60015 4.73236 4.74063 4.78786 4.80257 4.85713 4.94953 4.99068 5.05444 5.14210 5.14515 5.18501 5.31456 5.32327 5.39458 5.43783 5.51794 5.53844 5.66874 5.72581 5.83775 5.88540 5.99072 6.43094 6.53454 6.65781 7.07910 7.30397 8.81568 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.015911 B = 0.002392 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.405287 B =11703.761833 C =12134.939456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.107 4.107 3 C -0.139 4.139 4 C 0.102 3.898 5 N -0.585 5.585 6 C 0.263 3.737 7 C -0.547 4.547 8 H 0.053 0.947 9 C 0.010 3.990 10 N -0.925 5.925 11 Si 0.970 3.030 12 H -0.262 1.262 13 H -0.279 1.279 14 H -0.273 1.273 15 C 0.581 3.419 16 O -0.574 6.574 17 C -0.068 4.068 18 C -0.134 4.134 19 C -0.174 4.174 20 C -0.011 4.011 21 C 0.143 3.857 22 O -0.327 6.327 23 C 0.113 3.887 24 C -0.216 4.216 25 C -0.086 4.086 26 C -0.164 4.164 27 C -0.086 4.086 28 C -0.170 4.170 29 O -0.145 6.145 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.018 0.982 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.027 0.973 40 H 0.003 0.997 41 H 0.269 0.731 42 H 0.161 0.839 43 H 0.191 0.809 44 H 0.097 0.903 45 H 0.129 0.871 46 H 0.146 0.854 47 H 0.147 0.853 48 H 0.144 0.856 49 H 0.147 0.853 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.047 20.798 10.904 31.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.127 4.127 3 C -0.196 4.196 4 C -0.020 4.020 5 N -0.313 5.313 6 C 0.142 3.858 7 C -0.585 4.585 8 H 0.071 0.929 9 C -0.190 4.190 10 N -0.565 5.565 11 Si 0.794 3.206 12 H -0.187 1.187 13 H -0.204 1.204 14 H -0.197 1.197 15 C 0.369 3.631 16 O -0.457 6.457 17 C -0.120 4.120 18 C -0.155 4.155 19 C -0.193 4.193 20 C -0.063 4.063 21 C 0.068 3.932 22 O -0.242 6.242 23 C 0.068 3.932 24 C -0.234 4.234 25 C -0.104 4.104 26 C -0.182 4.182 27 C -0.104 4.104 28 C -0.189 4.189 29 O -0.042 6.042 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.037 0.963 37 H 0.095 0.905 38 H 0.124 0.876 39 H 0.045 0.955 40 H 0.021 0.979 41 H 0.078 0.922 42 H 0.179 0.821 43 H 0.208 0.792 44 H 0.115 0.885 45 H 0.146 0.854 46 H 0.164 0.836 47 H 0.165 0.835 48 H 0.162 0.838 49 H 0.165 0.835 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -20.433 20.479 10.379 30.734 hybrid contribution 1.077 -1.118 0.078 1.554 sum -19.356 19.361 10.457 29.306 Atomic orbital electron populations 1.21657 0.91908 1.02445 1.02769 1.21433 0.97879 0.96106 0.97289 1.21888 0.98863 0.96100 1.02720 1.22220 0.78057 1.01782 0.99915 1.48136 1.07821 1.25288 1.50076 1.18829 0.92001 0.83411 0.91521 1.21637 1.40163 0.99742 0.96973 0.92862 1.25870 0.94538 1.01556 0.96990 1.70058 1.40800 1.29354 1.16252 0.85374 0.78268 0.78400 0.78529 1.18717 1.20415 1.19729 1.17162 0.85913 0.80434 0.79543 1.90796 1.14601 1.75365 1.64916 1.21903 0.81160 1.02626 1.06316 1.22180 1.02050 0.94513 0.96748 1.21903 0.89645 1.02940 1.04781 1.22736 0.97465 0.90376 0.95688 1.21145 0.88229 0.90630 0.93152 1.86112 1.33328 1.51757 1.52966 1.19192 0.84593 0.93901 0.95491 1.21540 0.97287 1.04847 0.99731 1.21319 0.94915 0.94922 0.99209 1.21439 1.01414 0.99320 0.96060 1.21270 0.92610 0.98815 0.97664 1.20680 0.98480 0.98569 1.01174 1.84333 1.23824 1.43100 1.52901 0.91616 0.91376 0.92018 0.92851 0.91543 0.91310 0.96305 0.90546 0.87614 0.95528 0.97867 0.92243 0.82145 0.79166 0.88486 0.85376 0.83602 0.83532 0.83836 0.83521 0.85503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 9.19 71.98 0.66 -2.37 16 2 C -0.11 -3.38 3.14 -10.79 -0.03 -3.41 16 3 C -0.14 -4.32 7.80 71.98 0.56 -3.75 16 4 C 0.10 3.69 4.87 86.38 0.42 4.11 16 5 N -0.59 -27.23 2.24 -830.93 -1.86 -29.09 16 6 C 0.26 14.78 5.22 85.63 0.45 15.22 16 7 C -0.55 -32.24 9.39 25.60 0.24 -32.00 16 8 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 9 C 0.01 0.58 5.46 84.65 0.46 1.04 16 10 N -0.93 -56.48 13.29 21.45 0.28 -56.19 16 11 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 12 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 14 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 15 C 0.58 27.17 6.33 86.44 0.55 27.71 16 16 O -0.57 -31.68 16.42 -4.32 -0.07 -31.75 16 17 C -0.07 -2.45 5.90 24.07 0.14 -2.31 16 18 C -0.13 -4.06 10.63 22.39 0.24 -3.82 16 19 C -0.17 -3.80 10.77 22.07 0.24 -3.57 16 20 C -0.01 -0.25 6.91 24.97 0.17 -0.08 16 21 C 0.14 2.12 5.27 71.24 0.38 2.49 16 22 O -0.33 -6.30 10.12 -92.36 -0.93 -7.24 16 23 C 0.11 1.93 6.69 22.51 0.15 2.08 16 24 C -0.22 -2.78 9.04 22.36 0.20 -2.58 16 25 C -0.09 -0.93 10.04 22.25 0.22 -0.71 16 26 C -0.16 -1.77 10.04 22.28 0.22 -1.55 16 27 C -0.09 -1.06 10.04 22.25 0.22 -0.84 16 28 C -0.17 -2.79 9.99 22.36 0.22 -2.57 16 29 O -0.14 -4.22 4.44 -5.04 -0.02 -4.24 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.07 2.04 5.48 -2.39 -0.01 2.03 16 36 H 0.02 0.68 6.77 -2.39 -0.02 0.66 16 37 H 0.08 2.82 8.11 -2.39 -0.02 2.80 16 38 H 0.11 3.45 4.44 -20.32 -0.09 3.36 16 39 H 0.03 1.52 8.07 -2.39 -0.02 1.50 16 40 H 0.00 0.21 7.36 -2.39 -0.02 0.19 16 41 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.16 4.75 8.06 -2.91 -0.02 4.72 16 43 H 0.19 2.68 8.06 -2.91 -0.02 2.66 16 44 H 0.10 1.18 7.65 -2.39 -0.02 1.16 16 45 H 0.13 1.08 7.67 -2.39 -0.02 1.06 16 46 H 0.15 1.24 6.30 -2.91 -0.02 1.22 16 47 H 0.15 0.87 8.06 -2.91 -0.02 0.85 16 48 H 0.14 0.87 8.06 -2.91 -0.02 0.85 16 49 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 50 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -77.11 411.10 6.00 -71.11 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.86 Total: 16.98 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 5.72 Total: -6.89 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -1.57 Total: -85.29 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -1.03 Total: -43.23 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -77.11 6.00 -71.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058113706.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.637 kcal (2) G-P(sol) polarization free energy of solvation -77.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds