Wall clock time and date at job start Tue Mar 31 2020 05:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39757 * 125.83821 * 2 1 4 4 C 1.36103 * 107.82971 * 180.13580 * 3 2 1 5 5 N 1.39469 * 126.21930 * 179.90048 * 4 3 2 6 6 C 1.34785 * 119.99970 * 359.69184 * 5 4 3 7 7 O 1.21287 * 119.99689 * 359.97438 * 6 5 4 8 8 C 1.50694 * 119.99900 * 179.97438 * 6 5 4 9 9 O 1.42902 * 109.46848 * 180.02562 * 8 6 5 10 10 C 1.35905 * 116.99941 * 180.02562 * 9 8 6 11 11 C 1.38738 * 120.05455 * 179.97438 * 10 9 8 12 12 C 1.38139 * 119.94262 * 180.02562 * 11 10 9 13 13 C 1.38264 * 120.05734 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.94544 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.47083 * 239.99774 * 14 13 12 16 16 C 1.52997 * 109.47078 * 119.99901 * 14 13 12 17 17 C 1.38274 * 120.11129 * 0.25057 * 13 12 11 18 18 C 1.38140 * 120.05195 * 359.45387 * 17 13 12 19 19 N 1.35262 * 107.56867 * 359.64476 * 4 3 2 20 20 C 1.46498 * 126.05124 * 180.22760 * 19 4 3 21 21 C 1.50692 * 109.47290 * 89.99341 * 20 19 4 22 22 H 1.07997 * 120.00237 * 0.02562 * 21 20 19 23 23 C 1.37882 * 120.00176 * 179.97438 * 21 20 19 24 24 N 1.31516 * 119.99704 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00333 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46942 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.47256 * 120.00320 * 25 23 21 28 28 H 1.48497 * 109.47275 * 240.00610 * 25 23 21 29 29 N 1.30846 * 125.83831 * 179.73015 * 2 1 3 30 30 H 1.08997 * 109.47039 * 270.23682 * 1 2 3 31 31 H 1.09001 * 109.46978 * 30.23751 * 1 2 3 32 32 H 1.08999 * 109.46695 * 150.24220 * 1 2 3 33 33 H 1.08006 * 126.08142 * 0.02678 * 3 2 1 34 34 H 0.97006 * 120.00535 * 179.69283 * 5 4 3 35 35 H 1.08994 * 109.47457 * 59.99941 * 8 6 5 36 36 H 1.09006 * 109.47323 * 300.00025 * 8 6 5 37 37 H 1.07997 * 120.02456 * 0.02562 * 11 10 9 38 38 H 1.07998 * 119.97261 * 180.02562 * 12 11 10 39 39 H 1.09002 * 109.46959 * 359.97438 * 14 13 12 40 40 H 1.09004 * 109.46724 * 60.00424 * 15 14 13 41 41 H 1.09001 * 109.47194 * 179.97438 * 15 14 13 42 42 H 1.08992 * 109.47399 * 299.99938 * 15 14 13 43 43 H 1.09002 * 109.47153 * 60.00207 * 16 14 13 44 44 H 1.08998 * 109.47533 * 179.97438 * 16 14 13 45 45 H 1.08996 * 109.47853 * 300.00179 * 16 14 13 46 46 H 1.08000 * 119.96815 * 179.70256 * 17 13 12 47 47 H 1.08005 * 120.02747 * 180.24921 * 18 17 13 48 48 H 1.09001 * 109.46964 * 209.99806 * 20 19 4 49 49 H 1.09002 * 109.46691 * 329.99392 * 20 19 4 50 50 H 0.97001 * 120.00234 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7122 -0.0031 5 7 4.7512 1.5275 -0.0061 6 6 4.6157 2.8685 -0.0124 7 8 3.5096 3.3661 -0.0159 8 6 5.8383 3.7494 -0.0150 9 8 5.4372 5.1209 -0.0212 10 6 6.4262 6.0530 -0.0248 11 6 6.1082 7.4035 -0.0313 12 6 7.1154 8.3489 -0.0355 13 6 8.4393 7.9504 -0.0337 14 6 9.5360 8.9840 -0.0389 15 6 10.4017 8.8028 -1.2874 16 6 10.4020 8.8150 1.2111 17 6 8.7588 6.6051 -0.0330 18 6 7.7554 5.6558 -0.0226 19 7 3.6093 -0.6404 0.0031 20 6 4.7871 -1.5116 0.0072 21 6 5.1909 -1.8037 1.4293 22 1 4.6264 -1.3829 2.2482 23 6 6.2804 -2.6091 1.6851 24 7 6.9675 -3.1220 0.6878 25 14 6.7805 -2.9719 3.4479 26 1 5.8516 -2.2811 4.3780 27 1 6.7223 -4.4362 3.6876 28 1 8.1649 -2.4870 3.6795 29 7 2.2731 -1.0607 0.0050 30 1 -0.3633 0.0042 1.0276 31 1 -0.3633 0.8879 -0.5175 32 1 -0.3633 -0.8922 -0.5101 33 1 1.9901 2.1597 0.0004 34 1 5.6359 1.1295 -0.0036 35 1 6.4345 3.5408 -0.9033 36 1 6.4325 3.5490 0.8766 37 1 5.0742 7.7152 -0.0331 38 1 6.8684 9.4003 -0.0402 39 1 9.0956 9.9810 -0.0442 40 1 9.7848 8.9232 -2.1779 41 1 11.1947 9.5506 -1.2914 42 1 10.8421 7.8058 -1.2826 43 1 10.8424 7.8179 1.2159 44 1 11.1955 9.5622 1.2072 45 1 9.7854 8.9440 2.1005 46 1 9.7938 6.2964 -0.0365 47 1 8.0054 4.6051 -0.0180 48 1 4.5500 -2.4455 -0.5024 49 1 5.6085 -1.0144 -0.5089 50 1 7.7342 -3.6883 0.8676 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058226685.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:41 Heat of formation + Delta-G solvation = 18.778919 kcal Electronic energy + Delta-G solvation = -30465.016643 eV Core-core repulsion = 26266.069516 eV Total energy + Delta-G solvation = -4198.947127 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.01495 -40.48018 -39.27381 -38.06383 -35.07602 -34.80243 -33.81695 -32.12602 -31.34022 -30.22938 -29.19239 -28.70662 -27.47997 -27.36785 -26.07019 -23.61505 -23.19395 -22.74719 -21.42669 -20.33228 -19.83555 -19.39776 -18.49396 -17.22602 -16.83004 -16.56172 -16.33183 -16.24963 -15.64619 -15.05463 -14.89393 -14.67540 -14.61374 -14.26297 -14.05430 -13.97230 -13.75128 -13.58650 -13.29521 -12.91698 -12.82119 -12.73218 -12.62873 -12.53748 -12.44939 -12.07743 -11.81647 -11.62222 -11.61293 -11.50813 -11.11666 -11.11156 -11.05587 -10.95220 -10.88431 -10.46302 -10.38592 -9.96966 -9.83354 -9.55108 -9.24234 -8.77227 -8.30611 -7.96932 -7.50335 -6.38217 -4.46751 1.10075 1.17372 2.12826 2.23050 3.00543 3.11519 3.20945 3.24158 3.29741 3.49790 3.54767 3.79367 4.20370 4.34924 4.37743 4.48665 4.60458 4.75972 4.78687 4.82657 4.85981 4.95253 5.08173 5.09207 5.22093 5.27751 5.32819 5.36758 5.48680 5.52644 5.59756 5.62413 5.77886 5.87344 5.88982 6.02720 6.04778 6.11433 6.12491 6.13314 6.20712 6.35705 6.39676 6.49893 6.62094 6.78480 6.99623 7.13021 7.43819 7.51692 7.57008 7.74747 7.83867 8.18338 8.57219 8.66323 9.21203 10.68897 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.009202 B = 0.002224 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.168338 B =12588.317673 C =15005.345346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.051 3.949 3 C -0.293 4.293 4 C 0.301 3.699 5 N -0.636 5.636 6 C 0.521 3.479 7 O -0.491 6.491 8 C 0.048 3.952 9 O -0.288 6.288 10 C 0.128 3.872 11 C -0.145 4.145 12 C -0.078 4.078 13 C -0.117 4.117 14 C -0.052 4.052 15 C -0.145 4.145 16 C -0.145 4.145 17 C -0.073 4.073 18 C -0.207 4.207 19 N -0.343 5.343 20 C 0.256 3.744 21 C -0.540 4.540 22 H 0.066 0.934 23 C 0.067 3.933 24 N -0.890 5.890 25 Si 0.906 3.094 26 H -0.271 1.271 27 H -0.279 1.279 28 H -0.280 1.280 29 N -0.283 5.283 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.162 0.838 34 H 0.418 0.582 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.124 0.876 47 H 0.130 0.870 48 H 0.057 0.943 49 H 0.044 0.956 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.790 22.432 -3.062 23.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C -0.325 4.325 4 C 0.079 3.921 5 N -0.284 5.284 6 C 0.306 3.694 7 O -0.363 6.363 8 C -0.031 4.031 9 O -0.200 6.200 10 C 0.082 3.918 11 C -0.164 4.164 12 C -0.096 4.096 13 C -0.118 4.118 14 C -0.071 4.071 15 C -0.202 4.202 16 C -0.202 4.202 17 C -0.092 4.092 18 C -0.226 4.226 19 N -0.129 5.129 20 C 0.138 3.862 21 C -0.579 4.579 22 H 0.084 0.916 23 C -0.137 4.137 24 N -0.527 5.527 25 Si 0.732 3.268 26 H -0.195 1.195 27 H -0.205 1.205 28 H -0.206 1.206 29 N -0.108 5.108 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.179 0.821 34 H 0.254 0.746 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.150 0.850 38 H 0.146 0.854 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.142 0.858 47 H 0.148 0.852 48 H 0.075 0.925 49 H 0.062 0.938 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.137 21.379 -3.113 22.207 hybrid contribution 1.280 -0.015 0.972 1.607 sum 6.417 21.364 -2.142 22.410 Atomic orbital electron populations 1.20026 0.87500 1.02381 1.02211 1.22039 0.96572 0.90976 1.01764 1.21287 0.89053 1.00528 1.21631 1.17827 0.87695 0.83337 1.03228 1.42491 1.08633 1.05010 1.72309 1.19853 0.90663 0.81477 0.77428 1.90688 1.26245 1.73456 1.45906 1.22343 0.95408 0.80798 1.04580 1.86136 1.31814 1.13536 1.88559 1.19052 0.86957 0.89248 0.96495 1.20434 1.00598 0.89499 1.05853 1.20854 0.91526 0.99025 0.98244 1.19771 0.94189 0.94231 1.03576 1.20053 0.94036 0.97221 0.95741 1.21873 0.99321 1.01923 0.97119 1.21872 0.99313 1.01945 0.97118 1.20754 0.98851 0.92041 0.97506 1.21300 0.91929 1.00677 1.08668 1.49368 1.06600 1.02045 1.54859 1.19641 0.77792 0.89820 0.98962 1.21382 1.13253 1.31893 0.91335 0.91620 1.24942 0.95711 0.94840 0.98220 1.69924 1.19155 1.32565 1.31096 0.86304 0.78338 0.78505 0.83611 1.19530 1.20498 1.20621 1.77370 0.86062 1.21744 1.25659 0.91264 0.91095 0.91509 0.82109 0.74563 0.88386 0.88238 0.84962 0.85448 0.90584 0.92513 0.92491 0.92457 0.92459 0.92491 0.92493 0.85818 0.85203 0.92461 0.93801 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.01 0.38 -0.56 16 2 C 0.05 1.03 7.21 -82.44 -0.59 0.44 16 3 C -0.29 -6.02 9.58 -39.78 -0.38 -6.40 16 4 C 0.30 6.28 7.66 -153.16 -1.17 5.11 16 5 N -0.64 -10.70 5.42 -11.46 -0.06 -10.76 16 6 C 0.52 8.15 7.87 -10.98 -0.09 8.07 16 7 O -0.49 -9.32 13.63 -14.36 -0.20 -9.51 16 8 C 0.05 0.54 5.22 36.00 0.19 0.73 16 9 O -0.29 -3.85 9.67 -39.35 -0.38 -4.23 16 10 C 0.13 1.47 6.69 -39.22 -0.26 1.21 16 11 C -0.15 -1.52 9.99 -39.43 -0.39 -1.91 16 12 C -0.08 -0.68 9.66 -39.61 -0.38 -1.06 16 13 C -0.12 -0.98 4.78 -104.60 -0.50 -1.48 16 14 C -0.05 -0.34 3.09 -91.77 -0.28 -0.62 16 15 C -0.15 -0.86 9.00 37.16 0.33 -0.53 16 16 C -0.15 -0.88 9.01 37.16 0.33 -0.54 16 17 C -0.07 -0.64 8.70 -39.60 -0.34 -0.99 16 18 C -0.21 -2.03 9.04 -39.44 -0.36 -2.38 16 19 N -0.34 -7.95 3.60 -61.58 -0.22 -8.17 16 20 C 0.26 6.26 6.01 -5.20 -0.03 6.22 16 21 C -0.54 -14.25 9.39 -34.44 -0.32 -14.57 16 22 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 23 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 24 N -0.89 -23.88 13.29 55.43 0.74 -23.14 16 25 Si 0.91 20.36 29.54 -169.99 -5.02 15.34 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 29 N -0.28 -6.56 12.56 33.65 0.42 -6.13 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.16 3.24 5.83 -52.48 -0.31 2.94 16 34 H 0.42 6.22 7.97 -40.82 -0.33 5.89 16 35 H 0.10 0.85 7.66 -51.93 -0.40 0.45 16 36 H 0.10 0.92 7.66 -51.93 -0.40 0.52 16 37 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.13 0.82 7.94 -52.49 -0.42 0.41 16 39 H 0.08 0.44 7.87 -51.93 -0.41 0.03 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.06 0.34 7.37 -51.93 -0.38 -0.04 16 43 H 0.06 0.35 7.40 -51.93 -0.38 -0.03 16 44 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.12 0.88 7.09 -52.49 -0.37 0.51 16 47 H 0.13 1.05 6.30 -52.48 -0.33 0.72 16 48 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 49 H 0.04 1.02 7.50 -51.93 -0.39 0.64 16 50 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 417.73 15.07 6.30 6.30 Total: -1.00 -32.46 417.73 -9.87 -42.33 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -7.46 Total: 5.62 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -3.98 Total: -7.63 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.88 Total: -48.21 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.58 Total: -13.74 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -32.46 -9.87 -42.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058226685.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.107 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds