Wall clock time and date at job start Tue Mar 31 2020 05:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81397 * 109.46975 * 2 1 4 4 O 1.42094 * 110.54719 * 291.62522 * 3 2 1 5 5 O 1.42103 * 110.54483 * 68.37948 * 3 2 1 6 6 N 1.65606 * 104.44866 * 179.97438 * 3 2 1 7 7 C 1.46924 * 120.63103 * 269.72096 * 6 3 2 8 8 C 1.52759 * 109.00608 * 233.58358 * 7 6 3 9 9 C 1.53043 * 109.38324 * 305.58783 * 8 7 6 10 10 C 1.50704 * 109.44681 * 181.25578 * 9 8 7 11 11 O 1.21276 * 120.00216 * 246.32106 * 10 9 8 12 12 N 1.34774 * 120.00102 * 66.31636 * 10 9 8 13 13 C 1.46505 * 120.00119 * 5.00180 * 12 10 9 14 14 C 1.50693 * 109.47550 * 95.58393 * 13 12 10 15 15 H 1.08005 * 119.99685 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00616 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00453 * 179.97438 * 16 14 13 18 18 Si 1.86808 * 119.99543 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.47224 * 89.99930 * 18 16 14 20 20 H 1.48497 * 109.46777 * 210.00218 * 18 16 14 21 21 H 1.48501 * 109.46661 * 329.99918 * 18 16 14 22 22 C 1.46498 * 120.00106 * 184.99416 * 12 10 9 23 23 C 1.53010 * 109.46976 * 84.95003 * 22 12 10 24 24 C 1.47195 * 109.47262 * 179.97438 * 23 22 12 25 25 N 9.39666 * 158.44594 * 214.39889 * 6 1 2 26 26 C 1.53037 * 109.53575 * 61.24455 * 9 8 7 27 27 C 1.46920 * 120.62925 * 90.00218 * 6 3 2 28 28 H 1.08995 * 109.46915 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46756 * 300.00133 * 1 2 3 30 30 H 1.08992 * 109.47171 * 59.99359 * 1 2 3 31 31 H 1.08999 * 109.47115 * 240.00317 * 2 1 3 32 32 H 1.09002 * 109.47258 * 119.99840 * 2 1 3 33 33 H 1.09006 * 109.58739 * 353.41919 * 7 6 3 34 34 H 1.09000 * 109.58670 * 113.84484 * 7 6 3 35 35 H 1.09001 * 109.56301 * 185.55316 * 8 7 6 36 36 H 1.09005 * 109.36048 * 65.50080 * 8 7 6 37 37 H 1.08997 * 109.45986 * 301.21847 * 9 8 7 38 38 H 1.08996 * 109.47248 * 215.58600 * 13 12 10 39 39 H 1.09002 * 109.47128 * 335.58204 * 13 12 10 40 40 H 0.96996 * 119.99984 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.47285 * 204.94612 * 22 12 10 42 42 H 1.08993 * 109.47558 * 324.95143 * 22 12 10 43 43 H 1.09001 * 109.46794 * 299.99909 * 23 22 12 44 44 H 1.09002 * 109.46744 * 59.99877 * 23 22 12 45 45 H 1.09007 * 109.49232 * 178.68197 * 26 9 8 46 46 H 1.08993 * 109.49948 * 58.58442 * 26 9 8 47 47 H 1.09004 * 109.58988 * 246.15882 * 27 6 3 48 48 H 1.09006 * 109.58887 * 6.43845 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3439 -1.2369 5 8 1.8386 2.3438 1.2370 6 7 3.7844 1.5653 0.0007 7 6 4.5301 1.5061 1.2653 8 6 5.6193 2.5771 1.2511 9 6 6.4856 2.4041 0.0014 10 6 7.5794 3.4407 0.0017 11 8 7.5917 4.3095 -0.8444 12 7 8.5439 3.4024 0.9422 13 6 8.5925 2.2922 1.8969 14 6 9.5539 1.2437 1.3998 15 1 10.0769 1.3899 0.4662 16 6 9.7659 0.0978 2.1367 17 7 10.6046 -0.8174 1.7025 18 14 8.8619 -0.1546 3.7518 19 1 7.5775 -0.8545 3.4960 20 1 9.6989 -0.9739 4.6647 21 1 8.5907 1.1641 4.3785 22 6 9.5440 4.4708 1.0098 23 6 8.9906 5.6361 1.8327 24 6 9.9956 6.7093 1.9012 25 7 10.7716 7.5370 1.9537 26 6 5.6202 2.5763 -1.2490 27 6 4.5306 1.4996 -1.2632 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8514 1.6881 2.0986 34 1 4.9892 0.5234 1.3731 35 1 6.2406 2.4776 2.1411 36 1 5.1558 3.5637 1.2388 37 1 6.9290 1.4084 0.0019 38 1 8.9267 2.6612 2.8665 39 1 7.5987 1.8556 1.9973 40 1 10.7540 -1.6234 2.2211 41 1 10.4502 4.0910 1.4817 42 1 9.7761 4.8156 0.0022 43 1 8.0844 6.0159 1.3608 44 1 8.7584 5.2913 2.8403 45 1 6.2423 2.4761 -2.1385 46 1 5.1568 3.5628 -1.2377 47 1 4.9897 0.5164 -1.3659 48 1 3.8517 1.6748 -2.0979 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058307821.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:53 Heat of formation + Delta-G solvation = -79.102539 kcal Electronic energy + Delta-G solvation = -31128.797059 eV Core-core repulsion = 26925.216330 eV Total energy + Delta-G solvation = -4203.580729 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 357.156 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.05463 -37.89166 -37.32277 -36.67104 -36.08687 -35.40018 -33.47075 -33.12570 -32.58100 -31.27066 -30.85025 -27.93705 -25.82071 -24.32017 -23.77281 -23.16062 -22.63079 -20.62755 -19.02318 -18.57877 -17.69860 -17.63955 -17.00569 -16.69025 -16.55143 -16.36139 -15.61814 -15.10634 -14.82926 -14.63580 -14.55740 -14.35575 -14.27274 -13.86158 -13.68228 -13.45069 -13.32492 -12.95442 -12.84397 -12.64734 -12.56942 -12.49604 -12.32957 -12.26142 -12.24299 -12.01357 -11.92649 -11.80329 -11.64920 -11.36680 -11.16043 -11.09828 -10.90051 -10.81782 -10.63362 -10.47958 -10.44259 -10.31209 -9.71221 -9.32642 -8.99916 -8.80592 -7.98304 -6.31672 -4.34151 0.03535 2.44718 2.78907 2.90237 3.05956 3.13934 3.16708 3.18260 3.54671 3.65595 3.89792 4.15347 4.23234 4.27984 4.45172 4.54905 4.81697 4.86719 4.93362 4.98673 5.12805 5.15127 5.20219 5.22288 5.27402 5.33990 5.39591 5.44614 5.53160 5.58504 5.67449 5.74738 5.77094 5.87212 5.94137 6.04763 6.12657 6.21015 6.25508 6.32402 6.49685 6.52467 6.59562 7.13040 7.32627 7.66194 7.93879 8.28446 8.68988 8.77929 9.26502 10.80901 Molecular weight = 357.16amu Principal moments of inertia in cm(-1) A = 0.009387 B = 0.003527 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.042084 B = 7937.011316 C = 9753.748962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.635 4.635 3 S 2.607 3.393 4 O -0.954 6.954 5 O -0.954 6.954 6 N -0.999 5.999 7 C 0.117 3.883 8 C -0.131 4.131 9 C -0.105 4.105 10 C 0.525 3.475 11 O -0.562 6.562 12 N -0.590 5.590 13 C 0.196 3.804 14 C -0.544 4.544 15 H 0.079 0.921 16 C 0.078 3.922 17 N -0.889 5.889 18 Si 0.867 3.133 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.262 1.262 22 C 0.126 3.874 23 C -0.046 4.046 24 C 0.220 3.780 25 N -0.448 5.448 26 C -0.107 4.107 27 C 0.117 3.883 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.034 0.966 39 H 0.047 0.953 40 H 0.267 0.733 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.704 -1.105 -0.599 17.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.764 4.764 3 S 2.700 3.300 4 O -0.944 6.944 5 O -0.945 6.945 6 N -0.837 5.837 7 C -0.008 4.008 8 C -0.170 4.170 9 C -0.127 4.127 10 C 0.314 3.686 11 O -0.441 6.441 12 N -0.320 5.320 13 C 0.075 3.925 14 C -0.582 4.582 15 H 0.097 0.903 16 C -0.126 4.126 17 N -0.526 5.526 18 Si 0.693 3.307 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.186 1.186 22 C 0.001 3.999 23 C -0.087 4.087 24 C -0.098 4.098 25 N -0.125 5.125 26 C -0.147 4.147 27 C -0.008 4.008 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.130 0.870 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.100 0.900 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.929 1.171 -0.901 16.993 hybrid contribution -0.290 -1.620 0.968 1.910 sum -17.218 -0.450 0.067 17.224 Atomic orbital electron populations 1.21501 0.90732 1.04955 1.03369 1.30596 1.06977 1.27120 1.11710 1.05136 0.73122 0.77397 0.74306 1.93587 1.83275 1.72346 1.45212 1.93585 1.83295 1.72382 1.45214 1.57690 1.23811 1.89699 1.12507 1.21442 0.94760 1.00027 0.84539 1.22000 0.96896 0.99804 0.98264 1.21238 0.94266 1.00850 0.96311 1.20464 0.82545 0.85334 0.80273 1.90627 1.76928 1.38777 1.37783 1.47860 1.27573 1.23571 1.32970 1.20158 0.98660 0.85098 0.88537 1.21365 1.25472 1.01953 1.09434 0.90312 1.24874 0.94752 0.95588 0.97429 1.69883 1.34836 1.09080 1.38781 0.87001 0.80337 0.79132 0.84241 1.19702 1.20918 1.18631 1.21118 0.92082 0.86025 1.00719 1.19778 0.94370 0.90297 1.04279 1.29053 0.94007 0.93983 0.92745 1.81177 1.10566 1.11449 1.09310 1.21629 0.96156 0.99320 0.97575 1.21562 0.94897 0.99953 0.84391 0.90114 0.91024 0.91025 0.85037 0.85011 0.88660 0.90613 0.88744 0.90970 0.86961 0.94817 0.93553 0.92288 0.88937 0.89957 0.87302 0.87237 0.90024 0.90756 0.90935 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.92 37.16 0.37 -0.55 16 2 C -0.64 -4.21 6.90 37.16 0.26 -3.95 16 3 S 2.61 26.74 5.45 -107.50 -0.59 26.16 16 4 O -0.95 -12.48 16.59 -57.54 -0.95 -13.44 16 5 O -0.95 -12.45 16.58 -57.54 -0.95 -13.40 16 6 N -1.00 -10.39 3.23 -113.77 -0.37 -10.76 16 7 C 0.12 1.25 6.40 -3.93 -0.03 1.22 16 8 C -0.13 -1.63 4.94 -26.83 -0.13 -1.76 16 9 C -0.11 -1.51 1.65 -91.73 -0.15 -1.67 16 10 C 0.53 8.91 6.94 -10.98 -0.08 8.83 16 11 O -0.56 -10.72 15.63 5.56 0.09 -10.63 16 12 N -0.59 -9.91 2.47 -175.06 -0.43 -10.34 16 13 C 0.20 3.59 3.63 -5.19 -0.02 3.57 16 14 C -0.54 -12.76 9.93 -34.44 -0.34 -13.10 16 15 H 0.08 2.13 8.06 -52.48 -0.42 1.70 16 16 C 0.08 1.90 5.47 -17.82 -0.10 1.81 16 17 N -0.89 -24.11 13.96 55.43 0.77 -23.33 16 18 Si 0.87 17.63 27.47 -169.99 -4.67 12.96 16 19 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 21 H -0.26 -4.90 6.54 56.52 0.37 -4.53 16 22 C 0.13 1.89 5.37 -4.04 -0.02 1.87 16 23 C -0.05 -0.55 5.99 -29.52 -0.18 -0.73 16 24 C 0.22 3.06 15.43 -20.77 -0.32 2.74 16 25 N -0.45 -7.33 18.54 42.15 0.78 -6.55 16 26 C -0.11 -1.40 4.66 -26.61 -0.12 -1.53 16 27 C 0.12 1.22 6.43 -3.72 -0.02 1.19 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.13 0.68 8.14 -51.92 -0.42 0.25 16 32 H 0.13 0.70 8.14 -51.92 -0.42 0.28 16 33 H 0.10 0.92 6.85 -51.93 -0.36 0.57 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.16 5.36 -51.93 -0.28 0.88 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.11 1.72 7.69 -51.93 -0.40 1.32 16 38 H 0.03 0.60 7.17 -51.93 -0.37 0.23 16 39 H 0.05 0.78 3.43 -51.93 -0.18 0.61 16 40 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 41 H 0.09 1.42 8.03 -51.93 -0.42 1.01 16 42 H 0.08 1.31 7.51 -51.93 -0.39 0.92 16 43 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 46 H 0.07 1.05 8.07 -51.93 -0.42 0.63 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 0.90 6.86 -51.93 -0.36 0.54 16 LS Contribution 401.23 15.07 6.05 6.05 Total: -1.00 -33.20 401.23 -8.57 -41.77 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.41 Total: 3.57 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -0.89 Total: -2.05 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: 0.76 Total: -50.98 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -1.82 Total: -37.47 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -4.67 Total: 12.96 kcal Atomic # 16 Polarization: 26.74 SS G_CDS: -0.59 Total: 26.16 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.20 -8.57 -41.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058307821.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.336 kcal (2) G-P(sol) polarization free energy of solvation -33.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds