Wall clock time and date at job start Tue Mar 31 2020 05:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81397 * 109.46975 * 2 1 4 4 O 1.42094 * 110.54719 * 291.62522 * 3 2 1 5 5 O 1.42103 * 110.54483 * 68.37948 * 3 2 1 6 6 N 1.65606 * 104.44866 * 179.97438 * 3 2 1 7 7 C 1.46924 * 120.63103 * 269.72096 * 6 3 2 8 8 C 1.52759 * 109.00608 * 233.58358 * 7 6 3 9 9 C 1.53043 * 109.38324 * 305.58783 * 8 7 6 10 10 C 1.50704 * 109.44681 * 181.25578 * 9 8 7 11 11 O 1.21276 * 120.00216 * 246.32106 * 10 9 8 12 12 N 1.34774 * 120.00102 * 66.31636 * 10 9 8 13 13 C 1.46505 * 120.00119 * 5.00180 * 12 10 9 14 14 C 1.50693 * 109.47550 * 95.58393 * 13 12 10 15 15 H 1.08005 * 119.99685 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00616 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00453 * 179.97438 * 16 14 13 18 18 Si 1.86808 * 119.99543 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.47224 * 89.99930 * 18 16 14 20 20 H 1.48497 * 109.46777 * 210.00218 * 18 16 14 21 21 H 1.48501 * 109.46661 * 329.99918 * 18 16 14 22 22 C 1.46498 * 120.00106 * 184.99416 * 12 10 9 23 23 C 1.53010 * 109.46976 * 84.95003 * 22 12 10 24 24 C 1.47195 * 109.47262 * 179.97438 * 23 22 12 25 25 N 9.39666 * 158.44594 * 214.39889 * 6 1 2 26 26 C 1.53037 * 109.53575 * 61.24455 * 9 8 7 27 27 C 1.46920 * 120.62925 * 90.00218 * 6 3 2 28 28 H 1.08995 * 109.46915 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46756 * 300.00133 * 1 2 3 30 30 H 1.08992 * 109.47171 * 59.99359 * 1 2 3 31 31 H 1.08999 * 109.47115 * 240.00317 * 2 1 3 32 32 H 1.09002 * 109.47258 * 119.99840 * 2 1 3 33 33 H 1.09006 * 109.58739 * 353.41919 * 7 6 3 34 34 H 1.09000 * 109.58670 * 113.84484 * 7 6 3 35 35 H 1.09001 * 109.56301 * 185.55316 * 8 7 6 36 36 H 1.09005 * 109.36048 * 65.50080 * 8 7 6 37 37 H 1.08997 * 109.45986 * 301.21847 * 9 8 7 38 38 H 1.08996 * 109.47248 * 215.58600 * 13 12 10 39 39 H 1.09002 * 109.47128 * 335.58204 * 13 12 10 40 40 H 0.96996 * 119.99984 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.47285 * 204.94612 * 22 12 10 42 42 H 1.08993 * 109.47558 * 324.95143 * 22 12 10 43 43 H 1.09001 * 109.46794 * 299.99909 * 23 22 12 44 44 H 1.09002 * 109.46744 * 59.99877 * 23 22 12 45 45 H 1.09007 * 109.49232 * 178.68197 * 26 9 8 46 46 H 1.08993 * 109.49948 * 58.58442 * 26 9 8 47 47 H 1.09004 * 109.58988 * 246.15882 * 27 6 3 48 48 H 1.09006 * 109.58887 * 6.43845 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3439 -1.2369 5 8 1.8386 2.3438 1.2370 6 7 3.7844 1.5653 0.0007 7 6 4.5301 1.5061 1.2653 8 6 5.6193 2.5771 1.2511 9 6 6.4856 2.4041 0.0014 10 6 7.5794 3.4407 0.0017 11 8 7.5917 4.3095 -0.8444 12 7 8.5439 3.4024 0.9422 13 6 8.5925 2.2922 1.8969 14 6 9.5539 1.2437 1.3998 15 1 10.0769 1.3899 0.4662 16 6 9.7659 0.0978 2.1367 17 7 10.6046 -0.8174 1.7025 18 14 8.8619 -0.1546 3.7518 19 1 7.5775 -0.8545 3.4960 20 1 9.6989 -0.9739 4.6647 21 1 8.5907 1.1641 4.3785 22 6 9.5440 4.4708 1.0098 23 6 8.9906 5.6361 1.8327 24 6 9.9956 6.7093 1.9012 25 7 10.7716 7.5370 1.9537 26 6 5.6202 2.5763 -1.2490 27 6 4.5306 1.4996 -1.2632 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8514 1.6881 2.0986 34 1 4.9892 0.5234 1.3731 35 1 6.2406 2.4776 2.1411 36 1 5.1558 3.5637 1.2388 37 1 6.9290 1.4084 0.0019 38 1 8.9267 2.6612 2.8665 39 1 7.5987 1.8556 1.9973 40 1 10.7540 -1.6234 2.2211 41 1 10.4502 4.0910 1.4817 42 1 9.7761 4.8156 0.0022 43 1 8.0844 6.0159 1.3608 44 1 8.7584 5.2913 2.8403 45 1 6.2423 2.4761 -2.1385 46 1 5.1568 3.5628 -1.2377 47 1 4.9897 0.5164 -1.3659 48 1 3.8517 1.6748 -2.0979 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058307821.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:52 Heat of formation + Delta-G solvation = -102.100676 kcal Electronic energy + Delta-G solvation = -31129.794333 eV Core-core repulsion = 26925.216330 eV Total energy + Delta-G solvation = -4204.578003 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 357.156 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.31897 -38.90599 -38.19076 -37.88410 -36.95598 -36.82588 -34.64807 -33.96817 -33.88330 -32.37501 -31.88076 -29.56961 -26.86287 -25.08263 -24.77587 -24.15262 -24.10820 -21.63646 -20.04771 -19.57112 -19.09093 -18.66669 -18.48285 -17.92990 -17.36275 -17.16543 -16.95990 -16.10558 -15.96608 -15.81709 -15.77111 -15.37351 -15.05588 -14.94644 -14.74520 -14.55339 -14.31955 -14.06352 -13.98088 -13.73668 -13.64727 -13.48046 -13.42305 -13.34974 -13.18385 -13.14317 -12.92512 -12.85437 -12.69645 -12.39112 -12.35046 -12.31379 -11.97958 -11.96516 -11.79653 -11.66136 -11.59103 -11.42698 -11.30237 -10.69518 -10.54178 -9.86653 -9.43469 -8.18877 -6.26572 -0.70125 1.50393 1.54278 1.60012 1.62924 1.68646 1.76997 1.82535 2.28196 2.45811 2.94791 3.14154 3.17640 3.18639 3.56555 3.72382 3.84420 3.87572 3.97074 4.08990 4.13790 4.17162 4.25395 4.41357 4.46906 4.51585 4.53769 4.69566 4.73925 4.76815 4.85738 4.86824 4.90180 4.91169 4.92219 4.97416 5.03164 5.07303 5.13330 5.26915 5.33378 5.44747 5.57229 5.68078 5.75283 6.26283 6.53525 6.68497 6.80926 7.31656 7.42976 8.97557 Molecular weight = 357.16amu Principal moments of inertia in cm(-1) A = 0.009387 B = 0.003527 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.042084 B = 7937.011316 C = 9753.748962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.609 4.609 3 S 2.605 3.395 4 O -0.991 6.991 5 O -0.988 6.988 6 N -1.001 6.001 7 C 0.114 3.886 8 C -0.130 4.130 9 C -0.103 4.103 10 C 0.519 3.481 11 O -0.588 6.588 12 N -0.591 5.591 13 C 0.203 3.797 14 C -0.540 4.540 15 H 0.025 0.975 16 C 0.018 3.982 17 N -0.949 5.949 18 Si 0.932 3.068 19 H -0.248 1.248 20 H -0.300 1.300 21 H -0.226 1.226 22 C 0.122 3.878 23 C -0.030 4.030 24 C 0.243 3.757 25 N -0.491 5.491 26 C -0.107 4.107 27 C 0.120 3.880 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.265 0.735 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.119 0.881 44 H 0.141 0.859 45 H 0.071 0.929 46 H 0.057 0.943 47 H 0.093 0.907 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.530 -2.285 1.486 20.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.742 4.742 3 S 2.703 3.297 4 O -0.982 6.982 5 O -0.978 6.978 6 N -0.839 5.839 7 C -0.011 4.011 8 C -0.169 4.169 9 C -0.124 4.124 10 C 0.309 3.691 11 O -0.469 6.469 12 N -0.321 5.321 13 C 0.082 3.918 14 C -0.579 4.579 15 H 0.043 0.957 16 C -0.181 4.181 17 N -0.589 5.589 18 Si 0.754 3.246 19 H -0.172 1.172 20 H -0.227 1.227 21 H -0.149 1.149 22 C -0.003 4.003 23 C -0.071 4.071 24 C -0.074 4.074 25 N -0.169 5.169 26 C -0.147 4.147 27 C -0.005 4.005 28 H 0.120 0.880 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.172 0.828 32 H 0.173 0.827 33 H 0.126 0.874 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.122 0.878 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.137 0.863 44 H 0.159 0.841 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.111 0.889 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.755 0.070 1.178 19.790 hybrid contribution 0.635 -1.278 0.174 1.438 sum -19.120 -1.208 1.351 19.205 Atomic orbital electron populations 1.21693 0.90341 1.06376 1.03567 1.30364 1.07153 1.22639 1.14031 1.05030 0.72817 0.78935 0.72873 1.93538 1.83654 1.74616 1.46388 1.93536 1.83613 1.74546 1.46146 1.57588 1.23850 1.90096 1.12325 1.21553 0.94484 1.00062 0.84971 1.22020 0.97239 1.00608 0.97054 1.21262 0.93845 0.99153 0.98145 1.21018 0.82973 0.85518 0.79604 1.90611 1.77640 1.40068 1.38587 1.47869 1.27769 1.23548 1.32875 1.20084 0.98505 0.84188 0.89062 1.21570 1.25532 1.03424 1.07362 0.95683 1.25817 0.95557 0.95007 1.01691 1.70079 1.37696 1.10101 1.40978 0.85951 0.79360 0.80644 0.78649 1.17209 1.22656 1.14877 1.21134 0.91934 0.86795 1.00468 1.19736 0.93614 0.88295 1.05421 1.29284 0.93317 0.93445 0.91338 1.81203 1.11850 1.12948 1.10930 1.21605 0.96691 0.99663 0.96699 1.21559 0.94245 0.99795 0.84895 0.87959 0.90948 0.91058 0.82846 0.82716 0.87397 0.88885 0.88087 0.91321 0.87764 0.92804 0.90909 0.92583 0.89574 0.91631 0.86289 0.84099 0.91059 0.92368 0.88860 0.88110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.92 71.98 0.71 -0.77 16 2 C -0.61 -5.69 6.90 71.98 0.50 -5.20 16 3 S 2.61 48.32 5.45 -56.49 -0.31 48.01 16 4 O -0.99 -25.13 16.59 -127.65 -2.12 -27.25 16 5 O -0.99 -24.18 16.58 -127.65 -2.12 -26.30 16 6 N -1.00 -18.46 3.23 -513.85 -1.66 -20.12 16 7 C 0.11 2.05 6.40 86.22 0.55 2.60 16 8 C -0.13 -2.92 4.94 30.53 0.15 -2.77 16 9 C -0.10 -2.85 1.65 -11.51 -0.02 -2.87 16 10 C 0.52 17.47 6.94 87.66 0.61 18.08 16 11 O -0.59 -22.78 15.63 -3.02 -0.05 -22.82 16 12 N -0.59 -19.37 2.47 -826.16 -2.04 -21.41 16 13 C 0.20 6.99 3.63 85.63 0.31 7.30 16 14 C -0.54 -25.50 9.93 25.60 0.25 -25.24 16 15 H 0.02 1.41 8.06 -2.91 -0.02 1.39 16 16 C 0.02 0.86 5.47 84.66 0.46 1.32 16 17 N -0.95 -52.87 13.96 21.45 0.30 -52.57 16 18 Si 0.93 34.23 27.47 68.60 1.88 36.11 16 19 H -0.25 -8.19 7.11 99.48 0.71 -7.48 16 20 H -0.30 -11.83 7.11 99.48 0.71 -11.13 16 21 H -0.23 -6.98 6.54 99.48 0.65 -6.33 16 22 C 0.12 3.62 5.37 86.38 0.46 4.08 16 23 C -0.03 -0.65 5.99 28.79 0.17 -0.48 16 24 C 0.24 6.50 15.43 89.44 1.38 7.88 16 25 N -0.49 -15.90 18.54 20.00 0.37 -15.53 16 26 C -0.11 -2.77 4.66 30.67 0.14 -2.63 16 27 C 0.12 2.30 6.43 86.36 0.56 2.86 16 28 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.15 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.15 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.11 1.71 6.85 -2.38 -0.02 1.69 16 34 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.10 2.09 5.36 -2.39 -0.01 2.08 16 36 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.10 3.08 7.69 -2.39 -0.02 3.06 16 38 H 0.05 1.70 7.17 -2.39 -0.02 1.68 16 39 H 0.07 2.19 3.43 -2.39 -0.01 2.18 16 40 H 0.27 13.93 8.31 -92.71 -0.77 13.15 16 41 H 0.09 2.65 8.03 -2.39 -0.02 2.63 16 42 H 0.07 2.16 7.51 -2.39 -0.02 2.14 16 43 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.07 1.94 8.13 -2.38 -0.02 1.92 16 46 H 0.06 1.67 8.07 -2.39 -0.02 1.65 16 47 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 48 H 0.10 1.80 6.86 -2.38 -0.02 1.79 16 Total: -1.00 -76.04 401.23 1.43 -74.62 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.91 Total: 23.09 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 6.25 Total: 4.17 kcal Atomic # 7 Polarization: -106.60 SS G_CDS: -3.03 Total: -109.63 kcal Atomic # 8 Polarization: -72.09 SS G_CDS: -4.28 Total: -76.37 kcal Atomic # 14 Polarization: 34.23 SS G_CDS: 1.88 Total: 36.11 kcal Atomic # 16 Polarization: 48.32 SS G_CDS: -0.31 Total: 48.01 kcal Total: -76.04 1.43 -74.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058307821.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.481 kcal (2) G-P(sol) polarization free energy of solvation -76.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds