Wall clock time and date at job start Tue Mar 31 2020 05:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46497 * 120.00154 * 2 1 4 4 C 1.50702 * 109.47363 * 269.99834 * 3 2 1 5 5 H 1.07999 * 119.99955 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99994 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99905 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00183 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47339 * 90.00114 * 8 6 4 10 10 H 1.48506 * 109.47108 * 330.00160 * 8 6 4 11 11 H 1.48504 * 109.47362 * 210.00182 * 8 6 4 12 12 C 1.34781 * 119.99826 * 180.02562 * 2 1 3 13 13 O 1.21281 * 120.00022 * 180.02562 * 12 2 1 14 14 C 1.50703 * 119.99731 * 359.97438 * 12 2 1 15 15 N 1.46910 * 109.46680 * 186.01788 * 14 12 2 16 16 C 1.47904 * 110.99618 * 176.64094 * 15 14 12 17 17 C 1.53995 * 107.05735 * 214.15444 * 16 15 14 18 18 C 1.54597 * 105.13955 * 1.23016 * 17 16 15 19 19 H 1.09004 * 110.72027 * 263.41905 * 18 17 16 20 20 C 1.53000 * 110.72372 * 140.31533 * 18 17 16 21 21 N 1.46490 * 109.47219 * 66.45124 * 20 18 17 22 22 C 1.38593 * 120.00254 * 180.02562 * 21 20 18 23 23 C 1.39362 * 119.52781 * 0.02562 * 22 21 20 24 24 C 1.36884 * 119.38133 * 179.97438 * 23 22 21 25 25 C 1.40353 * 118.49132 * 359.97438 * 24 23 22 26 26 C 1.43207 * 120.48205 * 179.97438 * 25 24 23 27 27 N 9.44701 * 126.19941 * 78.08164 * 17 1 2 28 28 C 1.39582 * 119.03816 * 0.02562 * 25 24 23 29 29 N 1.31708 * 120.50660 * 359.73861 * 28 25 24 30 30 C 1.48529 * 111.00104 * 59.24889 * 15 14 12 31 31 H 1.09000 * 109.47172 * 89.99756 * 1 2 3 32 32 H 1.09001 * 109.47387 * 209.99620 * 1 2 3 33 33 H 1.09002 * 109.47059 * 330.00150 * 1 2 3 34 34 H 1.09002 * 109.47107 * 150.00269 * 3 2 1 35 35 H 1.08994 * 109.47348 * 30.00038 * 3 2 1 36 36 H 0.97001 * 120.00089 * 179.97438 * 7 6 4 37 37 H 1.08997 * 109.47146 * 306.01423 * 14 12 2 38 38 H 1.08990 * 109.47068 * 66.02139 * 14 12 2 39 39 H 1.08993 * 109.91787 * 333.51164 * 16 15 14 40 40 H 1.08998 * 109.91074 * 94.60431 * 16 15 14 41 41 H 1.09004 * 110.30461 * 120.14207 * 17 16 15 42 42 H 1.08997 * 110.30687 * 242.31477 * 17 16 15 43 43 H 1.08994 * 109.46792 * 186.45524 * 20 18 17 44 44 H 1.09000 * 109.46871 * 306.45337 * 20 18 17 45 45 H 0.97005 * 120.00120 * 359.97438 * 21 20 18 46 46 H 1.07998 * 120.30912 * 359.97438 * 23 22 21 47 47 H 1.08004 * 120.75730 * 180.02562 * 24 23 22 48 48 H 1.07999 * 119.74674 * 179.97438 * 28 25 24 49 49 H 1.09004 * 110.66903 * 278.15417 * 30 15 14 50 50 H 1.09004 * 110.66837 * 41.28286 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.3458 3.2573 -2.9126 8 14 3.7351 3.9279 -0.2529 9 1 5.1084 3.5057 0.1226 10 1 2.8294 3.7585 0.9117 11 1 3.7511 5.3548 -0.6641 12 6 2.1388 -1.1673 -0.0005 13 8 3.3516 -1.1673 -0.0001 14 6 1.3852 -2.4723 -0.0005 15 7 2.3333 -3.5852 0.1441 16 6 1.6224 -4.8794 0.2287 17 6 2.4343 -5.7794 1.1786 18 6 3.6217 -4.9064 1.6455 19 1 4.5081 -5.1072 1.0437 20 6 3.9134 -5.1380 3.1295 21 7 4.3965 -6.5071 3.3243 22 6 4.7272 -6.9511 4.5949 23 6 4.5960 -6.0869 5.6802 24 6 4.9230 -6.5287 6.9339 25 6 5.3817 -7.8470 7.0807 26 6 5.7362 -8.3532 8.3725 27 7 6.0182 -8.7539 9.3977 28 6 5.4884 -8.6572 5.9491 29 7 5.1586 -8.1935 4.7613 30 6 3.1069 -3.4648 1.4063 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 3.1499 1.1383 0.5138 35 1 1.6085 2.0283 0.5138 36 1 3.8226 4.0832 -3.0898 37 1 0.6806 -2.4850 0.8310 38 1 0.8415 -2.5779 -0.9392 39 1 0.6198 -4.7269 0.6282 40 1 1.5628 -5.3355 -0.7594 41 1 1.8245 -6.0763 2.0319 42 1 2.7975 -6.6593 0.6476 43 1 4.6741 -4.4331 3.4645 44 1 3.0007 -4.9892 3.7066 45 1 4.4842 -7.1033 2.5641 46 1 4.2395 -5.0780 5.5336 47 1 4.8294 -5.8779 7.7907 48 1 5.8405 -9.6733 6.0488 49 1 3.9409 -2.7741 1.2820 50 1 2.4609 -3.1463 2.2245 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065476527.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:17 Heat of formation + Delta-G solvation = 55.871569 kcal Electronic energy + Delta-G solvation = -30273.267436 eV Core-core repulsion = 26108.221518 eV Total energy + Delta-G solvation = -4165.045918 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.90684 -39.90434 -38.52788 -37.16790 -36.13624 -34.93775 -33.28344 -32.86633 -32.45939 -30.62213 -29.43981 -28.83860 -27.00358 -25.95667 -25.27613 -24.06475 -23.43358 -22.34169 -21.16645 -20.55078 -19.36811 -18.54424 -18.15006 -17.40935 -17.01228 -16.84713 -16.01478 -15.83314 -15.41036 -15.22947 -15.07562 -14.97556 -14.57217 -14.37813 -14.25462 -13.97098 -13.83577 -13.62408 -13.35012 -13.33074 -13.21088 -12.78170 -12.63163 -12.55321 -12.43727 -12.27596 -12.18042 -12.03347 -11.55456 -11.50423 -11.38809 -11.12541 -10.92730 -10.89034 -10.63898 -10.56213 -10.36440 -10.16375 -10.05704 -9.56674 -9.05147 -8.61498 -8.41028 -8.26635 -7.74749 -6.10895 -4.09808 0.37365 0.80891 2.31920 2.53121 2.64219 3.25999 3.27039 3.31832 3.33406 3.51340 3.53633 3.57407 3.97002 4.06165 4.25668 4.33412 4.36315 4.37154 4.47496 4.49151 4.74667 4.89654 4.91853 4.96880 5.11960 5.15234 5.18579 5.21268 5.23516 5.38345 5.40116 5.45439 5.50945 5.52701 5.54237 5.58028 5.78107 5.83169 5.86139 5.95973 6.07982 6.12417 6.38729 6.60091 6.79117 6.81311 6.93004 6.96902 7.16343 7.28533 7.56644 7.58005 8.18259 8.44298 8.90033 8.95452 9.49000 11.02588 Molecular weight = 357.19amu Principal moments of inertia in cm(-1) A = 0.014137 B = 0.001699 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.153704 B =16477.266161 C =17669.045313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.600 5.600 3 C 0.218 3.782 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.267 1.267 11 H -0.285 1.285 12 C 0.507 3.493 13 O -0.524 6.524 14 C 0.030 3.970 15 N -0.496 5.496 16 C 0.035 3.965 17 C -0.126 4.126 18 C -0.105 4.105 19 H 0.095 0.905 20 C 0.130 3.870 21 N -0.707 5.707 22 C 0.432 3.568 23 C -0.240 4.240 24 C 0.017 3.983 25 C -0.159 4.159 26 C 0.268 3.732 27 N -0.431 5.431 28 C 0.212 3.788 29 N -0.545 5.545 30 C 0.045 3.955 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.036 0.964 35 H 0.029 0.971 36 H 0.265 0.735 37 H 0.057 0.943 38 H 0.102 0.898 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.410 0.590 46 H 0.142 0.858 47 H 0.141 0.859 48 H 0.165 0.835 49 H 0.110 0.890 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.423 -21.353 15.281 26.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.333 5.333 3 C 0.097 3.903 4 C -0.568 4.568 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.192 1.192 11 H -0.211 1.211 12 C 0.293 3.707 13 O -0.400 6.400 14 C -0.101 4.101 15 N -0.220 5.220 16 C -0.093 4.093 17 C -0.164 4.164 18 C -0.124 4.124 19 H 0.113 0.887 20 C 0.006 3.994 21 N -0.335 5.335 22 C 0.193 3.807 23 C -0.265 4.265 24 C -0.010 4.010 25 C -0.168 4.168 26 C -0.048 4.048 27 N -0.107 5.107 28 C 0.049 3.951 29 N -0.262 5.262 30 C -0.083 4.083 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.246 0.754 46 H 0.160 0.840 47 H 0.159 0.841 48 H 0.182 0.818 49 H 0.128 0.872 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.960 -22.052 15.488 27.110 hybrid contribution -0.591 1.229 1.115 1.762 sum -3.551 -20.823 16.604 26.868 Atomic orbital electron populations 1.21660 0.81038 1.01593 1.01655 1.47845 1.06218 1.07128 1.72068 1.19660 0.92383 0.79859 0.98391 1.21325 1.36969 1.07180 0.91294 0.90779 1.24864 0.95252 0.97356 0.95559 1.69897 1.41425 1.23545 1.18659 0.86848 0.80095 0.79803 0.82884 1.19893 1.19152 1.21069 1.20102 0.88214 0.84665 0.77752 1.90640 1.13588 1.86769 1.48982 1.22275 0.94297 0.90685 1.02831 1.64551 1.22002 1.00408 1.35032 1.22912 0.95903 0.90346 1.00183 1.22485 0.96446 0.98360 0.99081 1.22333 0.99582 0.96428 0.94081 0.88683 1.21577 0.99462 0.81694 0.96714 1.44659 1.68767 1.14454 1.05653 1.18602 0.87132 0.88613 0.86332 1.21135 1.11232 1.02121 0.91972 1.21068 0.89513 0.92875 0.97586 1.16687 1.15430 0.96648 0.88076 1.25412 0.93123 0.93670 0.92552 1.81292 1.10287 1.08084 1.11085 1.22574 0.88970 0.98564 0.85038 1.67340 1.19447 1.13719 1.25731 1.23325 0.99367 0.95609 0.89993 0.92717 0.92581 0.91341 0.94603 0.95317 0.92552 0.92511 0.87962 0.93764 0.90055 0.91248 0.90798 0.90718 0.91222 0.75367 0.83978 0.84079 0.81771 0.87237 0.94037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 10.31 59.84 0.62 1.80 16 2 N -0.60 -11.60 2.86 -182.96 -0.52 -12.13 16 3 C 0.22 5.13 4.27 -5.19 -0.02 5.11 16 4 C -0.53 -14.96 9.94 -34.44 -0.34 -15.31 16 5 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 6 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 7 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 8 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.51 9.55 7.31 -10.98 -0.08 9.47 16 13 O -0.52 -11.95 13.87 5.56 0.08 -11.87 16 14 C 0.03 0.40 4.03 -4.97 -0.02 0.38 16 15 N -0.50 -6.25 5.11 -231.89 -1.19 -7.44 16 16 C 0.03 0.31 6.70 -2.75 -0.02 0.29 16 17 C -0.13 -0.86 6.20 -25.37 -0.16 -1.01 16 18 C -0.10 -0.81 3.13 -88.76 -0.28 -1.08 16 19 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 20 C 0.13 0.77 4.21 -4.05 -0.02 0.75 16 21 N -0.71 -4.32 5.56 -60.44 -0.34 -4.66 16 22 C 0.43 3.06 7.64 -155.20 -1.19 1.87 16 23 C -0.24 -1.40 9.25 -39.65 -0.37 -1.77 16 24 C 0.02 0.09 9.85 -39.28 -0.39 -0.29 16 25 C -0.16 -1.02 5.75 -106.67 -0.61 -1.63 16 26 C 0.27 2.20 15.37 -22.46 -0.35 1.85 16 27 N -0.43 -4.65 18.54 41.85 0.78 -3.87 16 28 C 0.21 1.33 10.92 -17.10 -0.19 1.14 16 29 N -0.55 -4.21 10.38 -12.11 -0.13 -4.33 16 30 C 0.05 0.51 5.03 -1.90 -0.01 0.50 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.58 6.28 -51.93 -0.33 0.25 16 33 H 0.07 0.90 7.89 -51.93 -0.41 0.49 16 34 H 0.04 0.90 6.85 -51.93 -0.36 0.54 16 35 H 0.03 0.64 6.95 -51.93 -0.36 0.28 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.06 0.61 6.92 -51.93 -0.36 0.25 16 38 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.04 0.35 7.68 -51.93 -0.40 -0.05 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.42 7.80 -51.93 -0.41 0.01 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.45 7.91 -51.93 -0.41 0.04 16 44 H 0.07 0.36 7.84 -51.93 -0.41 -0.04 16 45 H 0.41 2.39 8.45 -40.82 -0.34 2.04 16 46 H 0.14 0.63 6.66 -52.49 -0.35 0.28 16 47 H 0.14 0.51 8.06 -52.48 -0.42 0.08 16 48 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 49 H 0.11 1.60 6.43 -51.93 -0.33 1.27 16 50 H 0.04 0.43 7.92 -51.93 -0.41 0.02 16 LS Contribution 412.63 15.07 6.22 6.22 Total: -1.00 -35.81 412.63 -9.93 -45.73 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -7.42 Total: -1.53 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -3.51 Total: 4.04 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.62 Total: -59.06 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.08 Total: -11.87 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.81 -9.93 -45.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065476527.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.606 kcal (2) G-P(sol) polarization free energy of solvation -35.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds