Wall clock time and date at job start Tue Mar 31 2020 05:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46497 * 120.00154 * 2 1 4 4 C 1.50702 * 109.47363 * 269.99834 * 3 2 1 5 5 H 1.07999 * 119.99955 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99994 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99905 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00183 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47339 * 90.00114 * 8 6 4 10 10 H 1.48506 * 109.47108 * 330.00160 * 8 6 4 11 11 H 1.48504 * 109.47362 * 210.00182 * 8 6 4 12 12 C 1.34781 * 119.99826 * 180.02562 * 2 1 3 13 13 O 1.21281 * 120.00022 * 180.02562 * 12 2 1 14 14 C 1.50703 * 119.99731 * 359.97438 * 12 2 1 15 15 N 1.46910 * 109.46680 * 186.01788 * 14 12 2 16 16 C 1.47904 * 110.99618 * 176.64094 * 15 14 12 17 17 C 1.53995 * 107.05735 * 214.15444 * 16 15 14 18 18 C 1.54597 * 105.13955 * 1.23016 * 17 16 15 19 19 H 1.09004 * 110.72027 * 263.41905 * 18 17 16 20 20 C 1.53000 * 110.72372 * 140.31533 * 18 17 16 21 21 N 1.46490 * 109.47219 * 66.45124 * 20 18 17 22 22 C 1.38593 * 120.00254 * 180.02562 * 21 20 18 23 23 C 1.39362 * 119.52781 * 0.02562 * 22 21 20 24 24 C 1.36884 * 119.38133 * 179.97438 * 23 22 21 25 25 C 1.40353 * 118.49132 * 359.97438 * 24 23 22 26 26 C 1.43207 * 120.48205 * 179.97438 * 25 24 23 27 27 N 9.44701 * 126.19941 * 78.08164 * 17 1 2 28 28 C 1.39582 * 119.03816 * 0.02562 * 25 24 23 29 29 N 1.31708 * 120.50660 * 359.73861 * 28 25 24 30 30 C 1.48529 * 111.00104 * 59.24889 * 15 14 12 31 31 H 1.09000 * 109.47172 * 89.99756 * 1 2 3 32 32 H 1.09001 * 109.47387 * 209.99620 * 1 2 3 33 33 H 1.09002 * 109.47059 * 330.00150 * 1 2 3 34 34 H 1.09002 * 109.47107 * 150.00269 * 3 2 1 35 35 H 1.08994 * 109.47348 * 30.00038 * 3 2 1 36 36 H 0.97001 * 120.00089 * 179.97438 * 7 6 4 37 37 H 1.08997 * 109.47146 * 306.01423 * 14 12 2 38 38 H 1.08990 * 109.47068 * 66.02139 * 14 12 2 39 39 H 1.08993 * 109.91787 * 333.51164 * 16 15 14 40 40 H 1.08998 * 109.91074 * 94.60431 * 16 15 14 41 41 H 1.09004 * 110.30461 * 120.14207 * 17 16 15 42 42 H 1.08997 * 110.30687 * 242.31477 * 17 16 15 43 43 H 1.08994 * 109.46792 * 186.45524 * 20 18 17 44 44 H 1.09000 * 109.46871 * 306.45337 * 20 18 17 45 45 H 0.97005 * 120.00120 * 359.97438 * 21 20 18 46 46 H 1.07998 * 120.30912 * 359.97438 * 23 22 21 47 47 H 1.08004 * 120.75730 * 180.02562 * 24 23 22 48 48 H 1.07999 * 119.74674 * 179.97438 * 28 25 24 49 49 H 1.09004 * 110.66903 * 278.15417 * 30 15 14 50 50 H 1.09004 * 110.66837 * 41.28286 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.3458 3.2573 -2.9126 8 14 3.7351 3.9279 -0.2529 9 1 5.1084 3.5057 0.1226 10 1 2.8294 3.7585 0.9117 11 1 3.7511 5.3548 -0.6641 12 6 2.1388 -1.1673 -0.0005 13 8 3.3516 -1.1673 -0.0001 14 6 1.3852 -2.4723 -0.0005 15 7 2.3333 -3.5852 0.1441 16 6 1.6224 -4.8794 0.2287 17 6 2.4343 -5.7794 1.1786 18 6 3.6217 -4.9064 1.6455 19 1 4.5081 -5.1072 1.0437 20 6 3.9134 -5.1380 3.1295 21 7 4.3965 -6.5071 3.3243 22 6 4.7272 -6.9511 4.5949 23 6 4.5960 -6.0869 5.6802 24 6 4.9230 -6.5287 6.9339 25 6 5.3817 -7.8470 7.0807 26 6 5.7362 -8.3532 8.3725 27 7 6.0182 -8.7539 9.3977 28 6 5.4884 -8.6572 5.9491 29 7 5.1586 -8.1935 4.7613 30 6 3.1069 -3.4648 1.4063 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 3.1499 1.1383 0.5138 35 1 1.6085 2.0283 0.5138 36 1 3.8226 4.0832 -3.0898 37 1 0.6806 -2.4850 0.8310 38 1 0.8415 -2.5779 -0.9392 39 1 0.6198 -4.7269 0.6282 40 1 1.5628 -5.3355 -0.7594 41 1 1.8245 -6.0763 2.0319 42 1 2.7975 -6.6593 0.6476 43 1 4.6741 -4.4331 3.4645 44 1 3.0007 -4.9892 3.7066 45 1 4.4842 -7.1033 2.5641 46 1 4.2395 -5.0780 5.5336 47 1 4.8294 -5.8779 7.7907 48 1 5.8405 -9.6733 6.0488 49 1 3.9409 -2.7741 1.2820 50 1 2.4609 -3.1463 2.2245 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065476527.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:16 Heat of formation + Delta-G solvation = 30.050012 kcal Electronic energy + Delta-G solvation = -30274.387143 eV Core-core repulsion = 26108.221518 eV Total energy + Delta-G solvation = -4166.165625 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.191 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.40376 -41.00413 -39.58063 -37.84008 -36.83048 -36.46715 -34.71104 -33.84168 -33.40768 -31.37513 -30.49077 -30.04078 -28.02510 -27.17393 -26.18261 -24.59891 -24.09056 -23.85237 -22.07945 -21.16923 -19.96632 -19.88845 -19.13946 -18.63500 -18.05840 -17.84724 -17.20303 -16.78337 -16.62531 -16.26127 -15.88336 -15.71432 -15.54063 -15.12003 -15.05701 -14.85419 -14.74962 -14.51611 -14.31119 -14.16696 -14.05798 -13.89737 -13.76693 -13.69330 -13.62328 -13.38162 -13.12347 -12.96686 -12.83354 -12.73448 -12.41412 -12.37130 -12.03603 -12.00885 -11.87594 -11.72669 -11.48832 -11.13439 -10.82119 -10.81954 -10.53508 -10.51123 -9.37573 -9.26243 -8.74560 -8.32835 -6.37996 -0.12591 0.38239 1.33509 1.37879 1.46095 1.69034 1.84111 2.03447 2.05475 2.28380 2.32084 3.00095 3.01274 3.01748 3.08698 3.59850 3.61923 3.71290 3.83127 3.87496 3.93516 3.99587 4.18466 4.29148 4.33879 4.37491 4.40574 4.49583 4.55432 4.65491 4.71009 4.78436 4.79446 4.82526 4.83630 4.95523 4.97095 5.00272 5.01478 5.10774 5.13335 5.26496 5.33872 5.44831 5.47583 5.64744 5.90698 5.96227 6.04118 6.26137 6.47092 6.57542 6.63753 6.75525 7.09393 7.23325 7.49409 8.84379 Molecular weight = 357.19amu Principal moments of inertia in cm(-1) A = 0.014137 B = 0.001699 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.153704 B =16477.266161 C =17669.045313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.610 5.610 3 C 0.226 3.774 4 C -0.537 4.537 5 H 0.025 0.975 6 C 0.008 3.992 7 N -0.947 5.947 8 Si 0.950 3.050 9 H -0.276 1.276 10 H -0.235 1.235 11 H -0.277 1.277 12 C 0.495 3.505 13 O -0.575 6.575 14 C 0.044 3.956 15 N -0.528 5.528 16 C 0.034 3.966 17 C -0.116 4.116 18 C -0.093 4.093 19 H 0.080 0.920 20 C 0.138 3.862 21 N -0.703 5.703 22 C 0.422 3.578 23 C -0.242 4.242 24 C 0.022 3.978 25 C -0.166 4.166 26 C 0.294 3.706 27 N -0.481 5.481 28 C 0.212 3.788 29 N -0.565 5.565 30 C 0.046 3.954 31 H 0.047 0.953 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.019 0.981 35 H 0.050 0.950 36 H 0.268 0.732 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.411 0.589 46 H 0.158 0.842 47 H 0.161 0.839 48 H 0.182 0.818 49 H 0.066 0.934 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.284 -22.126 17.678 29.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.342 5.342 3 C 0.103 3.897 4 C -0.576 4.576 5 H 0.043 0.957 6 C -0.189 4.189 7 N -0.588 5.588 8 Si 0.773 3.227 9 H -0.202 1.202 10 H -0.158 1.158 11 H -0.202 1.202 12 C 0.284 3.716 13 O -0.454 6.454 14 C -0.086 4.086 15 N -0.253 5.253 16 C -0.093 4.093 17 C -0.154 4.154 18 C -0.113 4.113 19 H 0.099 0.901 20 C 0.014 3.986 21 N -0.332 5.332 22 C 0.184 3.816 23 C -0.266 4.266 24 C -0.005 4.005 25 C -0.176 4.176 26 C -0.020 4.020 27 N -0.158 5.158 28 C 0.050 3.950 29 N -0.283 5.283 30 C -0.082 4.082 31 H 0.066 0.934 32 H 0.121 0.879 33 H 0.098 0.902 34 H 0.038 0.962 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.129 0.871 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.104 0.896 45 H 0.247 0.753 46 H 0.176 0.824 47 H 0.179 0.821 48 H 0.199 0.801 49 H 0.085 0.915 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.883 -22.855 17.887 29.430 hybrid contribution -0.027 1.427 0.200 1.441 sum -4.910 -21.428 18.088 28.468 Atomic orbital electron populations 1.21957 0.77711 1.04516 1.02163 1.47971 1.08380 1.05949 1.71929 1.19314 0.92813 0.82558 0.95006 1.21603 1.36647 1.06673 0.92630 0.95669 1.25898 0.95342 0.99029 0.98666 1.70063 1.42803 1.24478 1.21424 0.85683 0.79582 0.77604 0.79856 1.20200 1.15783 1.20217 1.21197 0.88055 0.86267 0.76130 1.90619 1.16111 1.87697 1.51012 1.22180 0.94066 0.87675 1.04723 1.64464 1.23012 1.01608 1.36257 1.22980 0.96784 0.88624 1.00878 1.22456 0.95741 0.97896 0.99304 1.22154 0.99427 0.94485 0.95238 0.90141 1.21488 1.00146 0.81562 0.95422 1.44620 1.68603 1.14403 1.05550 1.18820 0.87191 0.88787 0.86836 1.21304 1.11103 1.02627 0.91611 1.21305 0.88401 0.92590 0.98248 1.16714 1.16364 0.97295 0.87195 1.25574 0.91742 0.92377 0.92332 1.81317 1.12230 1.09693 1.12575 1.22855 0.88271 0.99303 0.84598 1.67362 1.20338 1.14312 1.26290 1.23165 0.98237 0.96784 0.89980 0.93387 0.87934 0.90211 0.96247 0.93165 0.92346 0.88750 0.87079 0.91830 0.90232 0.89464 0.89885 0.90907 0.89585 0.75259 0.82448 0.82150 0.80079 0.91537 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.02 10.31 127.77 1.32 3.33 16 2 N -0.61 -23.18 2.86 -851.15 -2.43 -25.61 16 3 C 0.23 10.61 4.27 85.63 0.37 10.97 16 4 C -0.54 -31.36 9.94 25.60 0.25 -31.11 16 5 H 0.02 1.66 8.06 -2.91 -0.02 1.63 16 6 C 0.01 0.49 5.47 84.65 0.46 0.95 16 7 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 8 Si 0.95 43.75 27.47 68.60 1.88 45.63 16 9 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 10 H -0.23 -9.52 6.54 99.48 0.65 -8.87 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 12 C 0.50 18.57 7.31 87.66 0.64 19.21 16 13 O -0.58 -27.21 13.87 -3.03 -0.04 -27.25 16 14 C 0.04 1.09 4.03 85.56 0.35 1.43 16 15 N -0.53 -12.62 5.11 -887.57 -4.54 -17.16 16 16 C 0.03 0.51 6.70 86.45 0.58 1.09 16 17 C -0.12 -1.24 6.20 31.47 0.20 -1.04 16 18 C -0.09 -1.30 3.13 -9.59 -0.03 -1.33 16 19 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 20 C 0.14 1.31 4.21 86.38 0.36 1.68 16 21 N -0.70 -7.14 5.56 -345.14 -1.92 -9.06 16 22 C 0.42 5.11 7.64 133.21 1.02 6.13 16 23 C -0.24 -2.23 9.25 22.22 0.21 -2.02 16 24 C 0.02 0.19 9.85 22.47 0.22 0.41 16 25 C -0.17 -1.86 5.75 -21.19 -0.12 -1.98 16 26 C 0.29 4.55 15.37 88.33 1.36 5.91 16 27 N -0.48 -10.22 18.54 19.01 0.35 -9.87 16 28 C 0.21 2.34 10.92 85.04 0.93 3.27 16 29 N -0.57 -7.79 10.38 -192.24 -2.00 -9.79 16 30 C 0.05 1.01 5.03 86.65 0.44 1.44 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.10 1.66 6.28 -2.39 -0.01 1.64 16 33 H 0.08 1.86 7.89 -2.39 -0.02 1.84 16 34 H 0.02 0.98 6.85 -2.39 -0.02 0.96 16 35 H 0.05 2.14 6.95 -2.39 -0.02 2.13 16 36 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 37 H 0.09 1.59 6.92 -2.39 -0.02 1.57 16 38 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.06 0.72 7.68 -2.39 -0.02 0.70 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.09 0.67 7.80 -2.39 -0.02 0.65 16 42 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.07 0.75 7.91 -2.39 -0.02 0.73 16 44 H 0.09 0.59 7.84 -2.39 -0.02 0.57 16 45 H 0.41 4.03 8.45 -92.70 -0.78 3.25 16 46 H 0.16 0.92 6.66 -2.91 -0.02 0.90 16 47 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 48 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 49 H 0.07 2.04 6.43 -2.39 -0.02 2.02 16 50 H 0.05 1.01 7.92 -2.38 -0.02 0.99 16 Total: -1.00 -83.76 412.63 0.28 -83.48 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.13 Total: 10.91 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 8.54 Total: 18.35 kcal Atomic # 7 Polarization: -120.88 SS G_CDS: -10.23 Total: -131.11 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.04 Total: -27.25 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.88 Total: 45.63 kcal Total: -83.76 0.28 -83.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065476527.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.530 kcal (2) G-P(sol) polarization free energy of solvation -83.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds