Wall clock time and date at job start Tue Mar 31 2020 05:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99880 * 2 1 4 4 C 1.50703 * 109.47077 * 269.99336 * 3 2 1 5 5 H 1.08005 * 119.99703 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00292 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99761 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00272 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47206 * 59.99702 * 8 6 4 10 10 H 1.48496 * 109.47019 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46839 * 299.99831 * 8 6 4 12 12 C 1.34777 * 119.99854 * 179.97438 * 2 1 3 13 13 O 1.21274 * 120.00135 * 180.27973 * 12 2 1 14 14 C 1.50706 * 119.99766 * 0.02562 * 12 2 1 15 15 N 1.46902 * 109.46577 * 179.97438 * 14 12 2 16 16 C 1.47852 * 110.99904 * 290.83956 * 15 14 12 17 17 C 1.54906 * 104.79308 * 213.64049 * 16 15 14 18 18 C 1.55135 * 101.65564 * 37.07419 * 17 16 15 19 19 H 1.09001 * 110.85673 * 82.79589 * 18 17 16 20 20 C 1.53007 * 110.70405 * 205.96166 * 18 17 16 21 21 N 1.46489 * 109.47137 * 288.59645 * 20 18 17 22 22 C 1.38596 * 120.00093 * 179.97438 * 21 20 18 23 23 C 1.39362 * 119.52826 * 359.97438 * 22 21 20 24 24 C 1.36889 * 119.37907 * 179.97438 * 23 22 21 25 25 C 1.40351 * 118.49142 * 0.02562 * 24 23 22 26 26 C 1.43202 * 120.47978 * 180.02562 * 25 24 23 27 27 N 9.48280 * 144.38236 * 143.62409 * 17 1 2 28 28 C 1.39579 * 119.03719 * 359.97438 * 25 24 23 29 29 N 1.31709 * 120.51260 * 359.74541 * 28 25 24 30 30 C 1.47444 * 110.99494 * 170.00391 * 15 14 12 31 31 H 1.09002 * 109.47335 * 270.00735 * 1 2 3 32 32 H 1.09001 * 109.47076 * 30.00140 * 1 2 3 33 33 H 1.08996 * 109.47068 * 150.00167 * 1 2 3 34 34 H 1.08997 * 109.47682 * 29.99532 * 3 2 1 35 35 H 1.09004 * 109.47271 * 149.99629 * 3 2 1 36 36 H 0.96999 * 119.99754 * 180.02562 * 7 6 4 37 37 H 1.09000 * 109.47161 * 299.99737 * 14 12 2 38 38 H 1.09001 * 109.46740 * 59.99879 * 14 12 2 39 39 H 1.08993 * 110.37464 * 332.47073 * 16 15 14 40 40 H 1.08996 * 110.36894 * 94.81323 * 16 15 14 41 41 H 1.09001 * 110.99210 * 278.97925 * 17 16 15 42 42 H 1.09003 * 110.98794 * 155.16611 * 17 16 15 43 43 H 1.09002 * 109.46872 * 48.60329 * 20 18 17 44 44 H 1.09001 * 109.46980 * 168.59827 * 20 18 17 45 45 H 0.97000 * 120.00428 * 359.97438 * 21 20 18 46 46 H 1.07994 * 120.30748 * 359.96026 * 23 22 21 47 47 H 1.08007 * 120.74971 * 180.02562 * 24 23 22 48 48 H 1.08006 * 119.74156 * 180.02562 * 28 25 24 49 49 H 1.09006 * 109.88568 * 242.66219 * 30 15 14 50 50 H 1.08998 * 109.89091 * 3.68515 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0976 1.0960 -2.2417 6 6 3.1270 2.8773 -1.6729 7 7 3.5542 3.6175 -0.6732 8 14 3.4379 3.4168 -3.4341 9 1 2.1401 3.5951 -4.1335 10 1 4.1804 4.7027 -3.4340 11 1 4.2396 2.3816 -4.1346 12 6 2.1389 -1.1672 0.0005 13 8 3.3516 -1.1673 0.0056 14 6 1.3853 -2.4723 0.0005 15 7 2.3399 -3.5889 0.0005 16 6 3.0575 -3.6725 -1.2895 17 6 3.2957 -5.1868 -1.5122 18 6 1.9843 -5.7963 -0.9505 19 1 1.1905 -5.7637 -1.6967 20 6 2.2161 -7.2311 -0.4723 21 7 2.4100 -8.1066 -1.6307 22 6 2.6389 -9.4609 -1.4452 23 6 2.6832 -9.9792 -0.1524 24 6 2.9090 -11.3174 0.0273 25 6 3.0895 -12.1241 -1.1069 26 6 3.3278 -13.5293 -0.9684 27 7 3.5142 -14.6445 -0.8578 28 6 3.0323 -11.5370 -2.3719 29 7 2.8072 -10.2456 -2.5003 30 6 1.6528 -4.8714 0.2395 31 1 -0.3634 0.0001 1.0277 32 1 -0.3633 0.8900 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 1.6084 2.0284 0.5137 35 1 3.1499 1.1384 0.5139 36 1 4.0310 4.4434 -0.8505 37 1 0.7583 -2.5298 0.8903 38 1 0.7590 -2.5301 -0.8897 39 1 2.4443 -3.2627 -2.0920 40 1 4.0086 -3.1435 -1.2296 41 1 4.1608 -5.5333 -0.9468 42 1 3.4084 -5.4125 -2.5726 43 1 3.1027 -7.2643 0.1608 44 1 1.3501 -7.5686 0.0972 45 1 2.3782 -7.7385 -2.5276 46 1 2.5409 -9.3312 0.6998 47 1 2.9473 -11.7426 1.0194 48 1 3.1693 -12.1472 -3.2525 49 1 2.0120 -5.3173 1.1670 50 1 0.5765 -4.7101 0.2983 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065476529.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:20 Heat of formation + Delta-G solvation = 50.145173 kcal Electronic energy + Delta-G solvation = -29998.056161 eV Core-core repulsion = 25832.761928 eV Total energy + Delta-G solvation = -4165.294233 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.93622 -39.81019 -38.45456 -37.18956 -36.14186 -34.75357 -33.28746 -32.84284 -32.47633 -30.58558 -29.44475 -28.36689 -26.89719 -25.81428 -25.14548 -24.08182 -23.41006 -22.64709 -21.15264 -20.69869 -19.40644 -18.54016 -18.14975 -17.52032 -16.60608 -16.51783 -16.22064 -15.53689 -15.37653 -15.24697 -15.04109 -14.85299 -14.45833 -14.34443 -14.30851 -14.01950 -13.76567 -13.67540 -13.60923 -13.25422 -13.10352 -12.76518 -12.67116 -12.49479 -12.28824 -12.16453 -11.96355 -11.78680 -11.53260 -11.34382 -11.21556 -11.17707 -10.97583 -10.86362 -10.64808 -10.58028 -10.39059 -10.17035 -10.08384 -9.66209 -8.92732 -8.45287 -8.30506 -8.22868 -7.63998 -6.06077 -4.11213 0.34419 0.77705 2.29508 2.49774 2.61672 3.29186 3.34125 3.35417 3.45164 3.48529 3.54246 3.63340 4.01472 4.12483 4.17761 4.25593 4.27841 4.38505 4.43104 4.58243 4.70511 4.91122 4.94379 5.05301 5.15238 5.15857 5.19478 5.27602 5.29729 5.34735 5.35245 5.42974 5.50280 5.52453 5.63887 5.68044 5.75184 5.83728 5.89470 6.00185 6.15932 6.25120 6.35504 6.85319 6.91424 6.95111 7.10952 7.13672 7.43977 7.53649 7.53743 7.90347 8.21715 8.42140 8.88661 9.12368 9.54052 11.01874 Molecular weight = 357.19amu Principal moments of inertia in cm(-1) A = 0.023737 B = 0.001456 C = 0.001409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.285606 B =19220.257891 C =19871.885392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.606 5.606 3 C 0.247 3.753 4 C -0.527 4.527 5 H 0.055 0.945 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.504 3.496 13 O -0.523 6.523 14 C 0.032 3.968 15 N -0.508 5.508 16 C 0.048 3.952 17 C -0.124 4.124 18 C -0.124 4.124 19 H 0.084 0.916 20 C 0.133 3.867 21 N -0.708 5.708 22 C 0.431 3.569 23 C -0.239 4.239 24 C 0.017 3.983 25 C -0.158 4.158 26 C 0.267 3.733 27 N -0.431 5.431 28 C 0.212 3.788 29 N -0.545 5.545 30 C 0.052 3.948 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.031 0.969 35 H 0.044 0.956 36 H 0.264 0.736 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.044 0.956 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.410 0.590 46 H 0.143 0.857 47 H 0.141 0.859 48 H 0.165 0.835 49 H 0.082 0.918 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.749 -25.860 1.118 27.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.340 5.340 3 C 0.128 3.872 4 C -0.566 4.566 5 H 0.073 0.927 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.290 3.710 13 O -0.399 6.399 14 C -0.099 4.099 15 N -0.232 5.232 16 C -0.079 4.079 17 C -0.162 4.162 18 C -0.143 4.143 19 H 0.103 0.897 20 C 0.009 3.991 21 N -0.337 5.337 22 C 0.193 3.807 23 C -0.264 4.264 24 C -0.011 4.011 25 C -0.168 4.168 26 C -0.048 4.048 27 N -0.107 5.107 28 C 0.049 3.951 29 N -0.262 5.262 30 C -0.076 4.076 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.113 0.887 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.115 0.885 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.246 0.754 46 H 0.160 0.840 47 H 0.159 0.841 48 H 0.182 0.818 49 H 0.100 0.900 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.441 -26.701 1.124 27.490 hybrid contribution -0.669 0.608 -1.212 1.512 sum -7.110 -26.093 -0.088 27.044 Atomic orbital electron populations 1.21620 0.81681 1.02385 1.00340 1.48161 1.06014 1.07829 1.71967 1.19256 0.92564 0.78017 0.97372 1.21387 1.36633 1.06317 0.92291 0.92664 1.24928 0.95349 0.96385 0.97361 1.69922 1.38271 1.14346 1.30770 0.86573 0.78330 0.77870 0.84722 1.20296 1.21135 1.20212 1.20107 0.88274 0.84629 0.78021 1.90658 1.13606 1.86832 1.48786 1.22309 0.94254 0.91282 1.02062 1.63312 1.25316 1.01194 1.33392 1.23091 1.00645 0.95248 0.88913 1.22849 0.96757 0.95531 1.01099 1.22643 0.99298 0.93300 0.99096 0.89738 1.21554 1.01754 0.88285 0.87503 1.44669 1.75083 1.03569 1.10362 1.18603 0.87085 0.85667 0.89335 1.21120 1.12135 0.96343 0.96836 1.21066 0.89483 0.92383 0.98127 1.16688 1.17700 0.86454 0.95945 1.25399 0.93138 0.92278 0.93978 1.81284 1.10381 1.11940 1.07081 1.22583 0.87839 0.89338 0.95358 1.67346 1.21337 1.05457 1.32076 1.22806 0.97801 0.89361 0.97667 0.93756 0.90786 0.92816 0.95102 0.93814 0.92644 0.88660 0.92467 0.93773 0.88484 0.90214 0.90841 0.90636 0.91102 0.75404 0.83961 0.84075 0.81765 0.89972 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.25 10.24 59.85 0.61 1.86 16 2 N -0.61 -12.42 2.86 -182.95 -0.52 -12.94 16 3 C 0.25 6.37 5.16 -5.19 -0.03 6.34 16 4 C -0.53 -14.73 9.39 -34.44 -0.32 -15.06 16 5 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.52 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.50 10.03 7.47 -10.98 -0.08 9.95 16 13 O -0.52 -12.74 14.63 5.56 0.08 -12.66 16 14 C 0.03 0.44 3.61 -4.97 -0.02 0.42 16 15 N -0.51 -6.52 4.86 -232.68 -1.13 -7.65 16 16 C 0.05 0.62 5.75 -2.29 -0.01 0.61 16 17 C -0.12 -1.06 6.44 -24.60 -0.16 -1.22 16 18 C -0.12 -0.77 2.96 -88.80 -0.26 -1.04 16 19 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 20 C 0.13 0.61 4.17 -4.04 -0.02 0.59 16 21 N -0.71 -3.90 5.63 -60.43 -0.34 -4.24 16 22 C 0.43 2.81 7.64 -155.19 -1.19 1.63 16 23 C -0.24 -1.20 9.25 -39.65 -0.37 -1.57 16 24 C 0.02 0.08 9.85 -39.28 -0.39 -0.31 16 25 C -0.16 -0.94 5.75 -106.68 -0.61 -1.56 16 26 C 0.27 2.09 15.37 -22.47 -0.35 1.74 16 27 N -0.43 -4.48 18.54 41.84 0.78 -3.70 16 28 C 0.21 1.27 10.92 -17.10 -0.19 1.08 16 29 N -0.55 -4.05 10.38 -12.11 -0.13 -4.17 16 30 C 0.05 0.42 6.46 -2.83 -0.02 0.40 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 33 H 0.05 0.63 6.44 -51.93 -0.33 0.30 16 34 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 37 H 0.10 1.09 8.00 -51.93 -0.42 0.67 16 38 H 0.06 0.70 7.11 -51.93 -0.37 0.33 16 39 H 0.04 0.59 7.62 -51.93 -0.40 0.19 16 40 H 0.10 1.58 7.38 -51.93 -0.38 1.20 16 41 H 0.08 0.70 7.94 -51.93 -0.41 0.29 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.35 7.76 -51.93 -0.40 -0.05 16 44 H 0.07 0.25 7.91 -51.93 -0.41 -0.16 16 45 H 0.41 2.26 8.59 -40.82 -0.35 1.91 16 46 H 0.14 0.47 6.66 -52.49 -0.35 0.12 16 47 H 0.14 0.39 8.06 -52.48 -0.42 -0.03 16 48 H 0.17 0.62 8.06 -52.48 -0.42 0.20 16 49 H 0.08 0.60 7.82 -51.93 -0.41 0.19 16 50 H 0.06 0.41 7.55 -51.93 -0.39 0.01 16 LS Contribution 417.93 15.07 6.30 6.30 Total: -1.00 -35.35 417.93 -10.24 -45.59 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -7.51 Total: -2.99 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -3.49 Total: 5.55 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.61 Total: -58.31 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.08 Total: -12.66 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -35.35 -10.24 -45.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065476529.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.739 kcal (2) G-P(sol) polarization free energy of solvation -35.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds