Wall clock time and date at job start Tue Mar 31 2020 04:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99995 * 2 1 4 4 H 1.48506 * 109.46995 * 270.00373 * 3 2 1 5 5 H 1.48499 * 109.47233 * 30.00128 * 3 2 1 6 6 H 1.48492 * 109.47305 * 150.00378 * 3 2 1 7 7 C 1.37877 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99737 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99642 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.47018 * 180.02562 * 9 7 2 11 11 N 1.40067 * 125.86934 * 270.00569 * 10 9 7 12 12 C 1.30251 * 109.69125 * 179.97438 * 11 10 9 13 13 C 1.41174 * 108.47014 * 359.75906 * 12 11 10 14 14 C 1.36311 * 125.87375 * 89.99790 * 10 9 7 15 15 N 1.33199 * 134.61860 * 0.02562 * 14 10 9 16 16 C 1.31498 * 120.68465 * 180.02562 * 15 14 10 17 17 N 1.32122 * 122.64885 * 359.97438 * 16 15 14 18 18 C 1.32860 * 121.19307 * 0.02562 * 17 16 15 19 19 N 1.38103 * 120.81623 * 179.97438 * 18 17 16 20 20 C 1.46506 * 120.00018 * 0.02562 * 19 18 17 21 21 C 1.52997 * 109.47289 * 180.02562 * 20 19 18 22 22 H 1.09002 * 109.47196 * 304.99846 * 21 20 19 23 23 O 1.42891 * 109.47221 * 64.99848 * 21 20 19 24 24 C 1.50701 * 109.47011 * 185.00129 * 21 20 19 25 25 C 1.38213 * 120.01031 * 264.99857 * 24 21 20 26 26 C 1.38223 * 120.02873 * 179.97438 * 25 24 21 27 27 C 1.38271 * 120.04568 * 0.02562 * 26 25 24 28 28 C 1.38171 * 120.03051 * 0.02562 * 27 26 25 29 29 C 1.38438 * 120.01360 * 84.72251 * 24 21 20 30 30 F 1.35102 * 120.02654 * 359.97438 * 29 24 21 31 31 H 0.97008 * 119.99952 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.47105 * 60.00171 * 9 7 2 33 33 H 1.09001 * 109.47099 * 299.99796 * 9 7 2 34 34 H 1.07994 * 125.76315 * 179.97438 * 12 11 10 35 35 H 1.08004 * 118.67858 * 179.97438 * 16 15 14 36 36 H 0.97001 * 120.00730 * 179.97438 * 19 18 17 37 37 H 1.09001 * 109.47060 * 300.00345 * 20 19 18 38 38 H 1.09004 * 109.47073 * 59.99834 * 20 19 18 39 39 H 0.96703 * 114.00174 * 59.99662 * 23 21 20 40 40 H 1.08005 * 119.98957 * 359.97438 * 25 24 21 41 41 H 1.07994 * 119.97966 * 180.02562 * 26 25 24 42 42 H 1.08006 * 119.98552 * 179.97438 * 27 26 25 43 43 H 1.08002 * 120.01749 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0022 11 7 4.2738 -3.3498 1.1322 12 6 4.6902 -4.5291 0.7683 13 6 4.7029 -4.5834 -0.6423 14 6 4.2657 -3.3276 -1.1074 15 7 4.1922 -3.1192 -2.4209 16 6 4.5261 -4.0659 -3.2703 17 7 4.9466 -5.2565 -2.8815 18 6 5.0540 -5.5613 -1.5928 19 7 5.4939 -6.8085 -1.1950 20 6 5.8492 -7.8145 -2.1991 21 6 6.3008 -9.0973 -1.4982 22 1 7.1119 -8.8676 -0.8072 23 8 5.2029 -9.6567 -0.7748 24 6 6.7823 -10.0886 -2.5261 25 6 5.9198 -11.0515 -3.0151 26 6 6.3609 -11.9605 -3.9583 27 6 7.6655 -11.9080 -4.4134 28 6 8.5299 -10.9469 -3.9253 29 6 8.0871 -10.0314 -2.9853 30 9 8.9294 -9.0868 -2.5125 31 1 -0.4850 0.8401 0.0004 32 1 3.8752 -0.6804 0.8889 33 1 3.8745 -0.6800 -0.8912 34 1 4.9741 -5.3312 1.4334 35 1 4.4538 -3.8619 -4.3284 36 1 5.5683 -7.0184 -0.2509 37 1 4.9811 -8.0279 -2.8227 38 1 6.6597 -7.4357 -2.8219 39 1 4.4434 -9.8858 -1.3277 40 1 4.9007 -11.0937 -2.6600 41 1 5.6861 -12.7123 -4.3401 42 1 8.0092 -12.6190 -5.1501 43 1 9.5490 -10.9063 -4.2806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065534388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:40 Heat of formation + Delta-G solvation = 55.818493 kcal Electronic energy + Delta-G solvation = -30099.925886 eV Core-core repulsion = 25675.584267 eV Total energy + Delta-G solvation = -4424.341619 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 357.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.36135 -41.44109 -40.07821 -38.58059 -37.75359 -35.83340 -33.73175 -32.60510 -31.97110 -31.45586 -31.09627 -30.03391 -28.07196 -27.54066 -24.43134 -23.96383 -23.22216 -22.88416 -22.17999 -21.77664 -20.08383 -18.58299 -18.04229 -17.58377 -17.21803 -17.09728 -16.92528 -16.55834 -16.07209 -15.73967 -15.62903 -15.09413 -14.96515 -14.77694 -14.36141 -14.28512 -13.94717 -13.79616 -13.71665 -13.62501 -13.33495 -12.95425 -12.67153 -12.53531 -12.43504 -12.04189 -11.90116 -11.63544 -11.31497 -11.05205 -11.00114 -10.74932 -10.69470 -10.26491 -10.13476 -9.68458 -9.53398 -9.31838 -9.18550 -8.73758 -8.71931 -8.26054 -7.67437 -6.21064 -4.23490 0.57054 0.66029 1.26224 1.89381 2.79794 2.93453 3.01126 3.09412 3.22285 3.28020 3.29715 3.69924 3.85238 3.99549 4.19942 4.27327 4.32548 4.34629 4.45052 4.57643 4.62584 4.68358 4.75597 4.86449 4.94489 5.08591 5.11954 5.24949 5.36294 5.41096 5.47394 5.54836 5.62257 5.67917 5.77248 5.85130 6.23905 6.32278 6.50780 6.53312 6.85439 6.88898 7.04149 7.17468 7.32063 7.42644 7.81254 8.13184 8.32243 8.75182 8.81449 9.33758 10.91629 Molecular weight = 357.13amu Principal moments of inertia in cm(-1) A = 0.024262 B = 0.001931 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.796765 B =14498.484417 C =14576.385724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.079 3.921 3 Si 0.875 3.125 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.078 0.922 9 C 0.237 3.763 10 N -0.332 5.332 11 N -0.241 5.241 12 C 0.074 3.926 13 C -0.335 4.335 14 C 0.366 3.634 15 N -0.556 5.556 16 C 0.369 3.631 17 N -0.618 5.618 18 C 0.510 3.490 19 N -0.701 5.701 20 C 0.108 3.892 21 C 0.138 3.862 22 H 0.118 0.882 23 O -0.546 6.546 24 C -0.149 4.149 25 C -0.080 4.080 26 C -0.126 4.126 27 C -0.089 4.089 28 C -0.152 4.152 29 C 0.111 3.889 30 F -0.134 7.134 31 H 0.268 0.732 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.185 0.815 35 H 0.196 0.804 36 H 0.414 0.586 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.378 0.622 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.654 -25.961 -8.503 31.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.125 4.125 3 Si 0.701 3.299 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.575 4.575 8 H 0.096 0.904 9 C 0.118 3.882 10 N -0.118 5.118 11 N -0.056 5.056 12 C -0.121 4.121 13 C -0.352 4.352 14 C 0.119 3.881 15 N -0.281 5.281 16 C 0.076 3.924 17 N -0.349 5.349 18 C 0.258 3.742 19 N -0.335 5.335 20 C -0.016 4.016 21 C 0.078 3.922 22 H 0.136 0.864 23 O -0.353 6.353 24 C -0.151 4.151 25 C -0.098 4.098 26 C -0.144 4.144 27 C -0.107 4.107 28 C -0.171 4.171 29 C 0.091 3.909 30 F -0.112 7.112 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.202 0.798 35 H 0.212 0.788 36 H 0.251 0.749 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.227 0.773 40 H 0.152 0.848 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 16.506 -24.540 -7.958 30.626 hybrid contribution 0.300 0.221 0.011 0.373 sum 16.806 -24.319 -7.947 30.610 Atomic orbital electron populations 1.69877 1.06150 1.27345 1.49110 1.24776 0.94852 0.98839 0.94020 0.86867 0.80339 0.83602 0.79098 1.19504 1.20540 1.18875 1.21102 0.87880 0.95461 1.53099 0.90407 1.20088 0.96674 0.72509 0.98912 1.48949 1.50541 1.13205 0.99110 1.76953 1.16171 1.03625 1.08863 1.23417 1.00179 0.96173 0.92371 1.19571 1.22106 0.98208 0.95343 1.18898 0.92440 0.88339 0.88456 1.67502 1.24856 1.35830 0.99909 1.24409 0.86743 0.82121 0.99173 1.67948 1.28828 1.23603 1.14548 1.17872 0.84209 0.83901 0.88208 1.44129 1.70392 1.09785 1.09184 1.21924 1.01579 0.87004 0.91129 1.20940 0.90107 0.89108 0.92030 0.86412 1.86664 1.26810 1.83817 1.37972 1.20406 0.93355 1.00243 1.01121 1.20811 0.99473 0.93752 0.95786 1.21219 0.96254 0.99426 0.97529 1.21092 0.93318 0.97412 0.98879 1.21199 1.01607 0.96059 0.98217 1.17488 0.87542 0.89118 0.96740 1.91532 1.70312 1.62444 1.86958 0.92163 0.93039 0.93090 0.79812 0.78781 0.74906 0.90703 0.90340 0.77274 0.84828 0.84988 0.84827 0.84469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.15 13.96 55.43 0.77 -26.37 16 2 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 3 Si 0.87 21.01 27.47 -169.99 -4.67 16.35 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 7 C -0.54 -15.71 9.94 -34.44 -0.34 -16.05 16 8 H 0.08 2.56 8.06 -52.49 -0.42 2.13 16 9 C 0.24 6.00 5.26 -5.19 -0.03 5.97 16 10 N -0.33 -7.86 3.63 -61.64 -0.22 -8.09 16 11 N -0.24 -5.13 12.45 30.80 0.38 -4.75 16 12 C 0.07 1.26 11.87 -17.11 -0.20 1.05 16 13 C -0.33 -6.07 6.14 -106.81 -0.66 -6.73 16 14 C 0.37 8.04 8.04 -156.23 -1.26 6.79 16 15 N -0.56 -11.62 10.47 -13.97 -0.15 -11.76 16 16 C 0.37 6.16 12.24 -92.13 -1.13 5.03 16 17 N -0.62 -9.76 9.69 -13.62 -0.13 -9.89 16 18 C 0.51 7.85 7.55 -154.85 -1.17 6.68 16 19 N -0.70 -7.76 5.63 -60.08 -0.34 -8.10 16 20 C 0.11 0.98 5.35 -4.04 -0.02 0.96 16 21 C 0.14 1.01 3.01 -27.88 -0.08 0.93 16 22 H 0.12 0.91 7.80 -51.93 -0.41 0.50 16 23 O -0.55 -3.93 12.94 -35.23 -0.46 -4.39 16 24 C -0.15 -1.05 5.07 -104.56 -0.53 -1.58 16 25 C -0.08 -0.44 9.30 -39.60 -0.37 -0.80 16 26 C -0.13 -0.59 10.05 -39.57 -0.40 -0.99 16 27 C -0.09 -0.43 10.04 -39.59 -0.40 -0.82 16 28 C -0.15 -0.93 10.03 -39.51 -0.40 -1.33 16 29 C 0.11 0.86 7.24 -39.42 -0.29 0.58 16 30 F -0.13 -1.23 16.57 2.25 0.04 -1.20 16 31 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.05 1.27 7.20 -51.93 -0.37 0.90 16 33 H 0.05 1.27 7.57 -51.93 -0.39 0.88 16 34 H 0.19 2.15 8.06 -52.49 -0.42 1.73 16 35 H 0.20 2.43 8.06 -52.48 -0.42 2.01 16 36 H 0.41 3.91 8.34 -40.82 -0.34 3.57 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.38 1.63 7.33 45.56 0.33 1.96 16 40 H 0.13 0.44 6.41 -52.48 -0.34 0.11 16 41 H 0.13 0.34 8.06 -52.49 -0.42 -0.08 16 42 H 0.13 0.33 8.06 -52.48 -0.42 -0.09 16 43 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 LS Contribution 377.76 15.07 5.69 5.69 Total: -1.00 -36.25 377.76 -10.50 -46.75 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -4.06 Total: 3.89 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -7.36 Total: 1.86 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: 0.32 Total: -68.96 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: -0.46 Total: -4.39 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.25 -10.50 -46.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065534388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.573 kcal (2) G-P(sol) polarization free energy of solvation -36.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds