Wall clock time and date at job start Tue Mar 31 2020 04:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99995 * 2 1 4 4 H 1.48506 * 109.46995 * 270.00373 * 3 2 1 5 5 H 1.48499 * 109.47233 * 30.00128 * 3 2 1 6 6 H 1.48492 * 109.47305 * 150.00378 * 3 2 1 7 7 C 1.37877 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99737 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99642 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.47018 * 180.02562 * 9 7 2 11 11 N 1.40067 * 125.86934 * 270.00569 * 10 9 7 12 12 C 1.30251 * 109.69125 * 179.97438 * 11 10 9 13 13 C 1.41174 * 108.47014 * 359.75906 * 12 11 10 14 14 C 1.36311 * 125.87375 * 89.99790 * 10 9 7 15 15 N 1.33199 * 134.61860 * 0.02562 * 14 10 9 16 16 C 1.31498 * 120.68465 * 180.02562 * 15 14 10 17 17 N 1.32122 * 122.64885 * 359.97438 * 16 15 14 18 18 C 1.32860 * 121.19307 * 0.02562 * 17 16 15 19 19 N 1.38103 * 120.81623 * 179.97438 * 18 17 16 20 20 C 1.46506 * 120.00018 * 0.02562 * 19 18 17 21 21 C 1.52997 * 109.47289 * 180.02562 * 20 19 18 22 22 H 1.09002 * 109.47196 * 304.99846 * 21 20 19 23 23 O 1.42891 * 109.47221 * 64.99848 * 21 20 19 24 24 C 1.50701 * 109.47011 * 185.00129 * 21 20 19 25 25 C 1.38213 * 120.01031 * 264.99857 * 24 21 20 26 26 C 1.38223 * 120.02873 * 179.97438 * 25 24 21 27 27 C 1.38271 * 120.04568 * 0.02562 * 26 25 24 28 28 C 1.38171 * 120.03051 * 0.02562 * 27 26 25 29 29 C 1.38438 * 120.01360 * 84.72251 * 24 21 20 30 30 F 1.35102 * 120.02654 * 359.97438 * 29 24 21 31 31 H 0.97008 * 119.99952 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.47105 * 60.00171 * 9 7 2 33 33 H 1.09001 * 109.47099 * 299.99796 * 9 7 2 34 34 H 1.07994 * 125.76315 * 179.97438 * 12 11 10 35 35 H 1.08004 * 118.67858 * 179.97438 * 16 15 14 36 36 H 0.97001 * 120.00730 * 179.97438 * 19 18 17 37 37 H 1.09001 * 109.47060 * 300.00345 * 20 19 18 38 38 H 1.09004 * 109.47073 * 59.99834 * 20 19 18 39 39 H 0.96703 * 114.00174 * 59.99662 * 23 21 20 40 40 H 1.08005 * 119.98957 * 359.97438 * 25 24 21 41 41 H 1.07994 * 119.97966 * 180.02562 * 26 25 24 42 42 H 1.08006 * 119.98552 * 179.97438 * 27 26 25 43 43 H 1.08002 * 120.01749 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0022 11 7 4.2738 -3.3498 1.1322 12 6 4.6902 -4.5291 0.7683 13 6 4.7029 -4.5834 -0.6423 14 6 4.2657 -3.3276 -1.1074 15 7 4.1922 -3.1192 -2.4209 16 6 4.5261 -4.0659 -3.2703 17 7 4.9466 -5.2565 -2.8815 18 6 5.0540 -5.5613 -1.5928 19 7 5.4939 -6.8085 -1.1950 20 6 5.8492 -7.8145 -2.1991 21 6 6.3008 -9.0973 -1.4982 22 1 7.1119 -8.8676 -0.8072 23 8 5.2029 -9.6567 -0.7748 24 6 6.7823 -10.0886 -2.5261 25 6 5.9198 -11.0515 -3.0151 26 6 6.3609 -11.9605 -3.9583 27 6 7.6655 -11.9080 -4.4134 28 6 8.5299 -10.9469 -3.9253 29 6 8.0871 -10.0314 -2.9853 30 9 8.9294 -9.0868 -2.5125 31 1 -0.4850 0.8401 0.0004 32 1 3.8752 -0.6804 0.8889 33 1 3.8745 -0.6800 -0.8912 34 1 4.9741 -5.3312 1.4334 35 1 4.4538 -3.8619 -4.3284 36 1 5.5683 -7.0184 -0.2509 37 1 4.9811 -8.0279 -2.8227 38 1 6.6597 -7.4357 -2.8219 39 1 4.4434 -9.8858 -1.3277 40 1 4.9007 -11.0937 -2.6600 41 1 5.6861 -12.7123 -4.3401 42 1 8.0092 -12.6190 -5.1501 43 1 9.5490 -10.9063 -4.2806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065534388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:39 Heat of formation + Delta-G solvation = 30.522439 kcal Electronic energy + Delta-G solvation = -30101.022805 eV Core-core repulsion = 25675.584267 eV Total energy + Delta-G solvation = -4425.438538 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 357.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.94762 -42.86506 -40.60789 -39.86250 -38.45435 -36.86350 -35.65921 -33.97627 -33.16328 -32.68039 -31.56572 -31.16906 -29.72876 -28.63538 -25.49854 -25.26372 -24.53677 -23.67044 -23.44023 -22.35756 -21.53689 -19.42028 -19.28588 -19.18622 -18.61556 -17.91330 -17.72808 -17.60849 -16.89375 -16.77559 -16.54512 -16.27685 -16.05293 -15.70034 -15.45131 -15.22527 -15.14512 -14.99682 -14.73633 -14.68408 -14.44395 -14.13626 -13.90012 -13.78445 -13.41223 -13.14452 -12.93614 -12.65715 -12.48181 -12.40480 -12.29381 -12.12396 -12.04995 -11.85961 -11.55908 -11.32089 -10.92232 -10.67202 -10.13544 -9.95071 -9.78759 -9.64440 -9.02971 -8.43681 -6.53875 -0.08480 0.12950 0.24879 0.47746 1.26107 1.33411 1.37702 1.45677 1.59126 1.91973 2.24225 2.61727 2.87731 2.96661 3.19480 3.23109 3.34324 3.35782 3.45460 3.60762 3.74970 3.80028 3.81581 4.00566 4.03986 4.18987 4.38318 4.38566 4.40395 4.50017 4.65956 4.71120 4.76916 4.90679 5.05897 5.07883 5.19143 5.20444 5.36039 5.46857 5.47773 5.65185 5.81133 5.92815 6.00735 6.17900 6.44938 6.50308 6.62788 6.72169 7.08564 7.40214 8.73294 Molecular weight = 357.13amu Principal moments of inertia in cm(-1) A = 0.024262 B = 0.001931 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.796765 B =14498.484417 C =14576.385724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.020 3.980 3 Si 0.953 3.047 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.244 1.244 7 C -0.548 4.548 8 H 0.020 0.980 9 C 0.250 3.750 10 N -0.365 5.365 11 N -0.286 5.286 12 C 0.102 3.898 13 C -0.345 4.345 14 C 0.339 3.661 15 N -0.602 5.602 16 C 0.377 3.623 17 N -0.615 5.615 18 C 0.517 3.483 19 N -0.678 5.678 20 C 0.111 3.889 21 C 0.152 3.848 22 H 0.113 0.887 23 O -0.554 6.554 24 C -0.161 4.161 25 C -0.085 4.085 26 C -0.126 4.126 27 C -0.088 4.088 28 C -0.162 4.162 29 C 0.083 3.917 30 F -0.149 7.149 31 H 0.274 0.726 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.238 0.762 35 H 0.232 0.768 36 H 0.424 0.576 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.391 0.609 40 H 0.155 0.845 41 H 0.157 0.843 42 H 0.159 0.841 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.354 -28.012 -9.390 34.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.180 4.180 3 Si 0.774 3.226 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.168 1.168 7 C -0.586 4.586 8 H 0.039 0.961 9 C 0.130 3.870 10 N -0.152 5.152 11 N -0.101 5.101 12 C -0.093 4.093 13 C -0.363 4.363 14 C 0.092 3.908 15 N -0.330 5.330 16 C 0.085 3.915 17 N -0.346 5.346 18 C 0.263 3.737 19 N -0.311 5.311 20 C -0.013 4.013 21 C 0.092 3.908 22 H 0.131 0.869 23 O -0.362 6.362 24 C -0.163 4.163 25 C -0.103 4.103 26 C -0.144 4.144 27 C -0.106 4.106 28 C -0.181 4.181 29 C 0.064 3.936 30 F -0.128 7.128 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.254 0.746 35 H 0.248 0.752 36 H 0.263 0.737 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.242 0.758 40 H 0.172 0.828 41 H 0.175 0.825 42 H 0.176 0.824 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 18.235 -26.688 -8.837 33.509 hybrid contribution -0.227 0.486 0.158 0.559 sum 18.007 -26.202 -8.679 32.956 Atomic orbital electron populations 1.70031 1.08270 1.28923 1.50242 1.25840 0.95816 1.03348 0.92964 0.85642 0.79483 0.77530 0.79925 1.18298 1.19521 1.16754 1.21193 0.90223 0.93535 1.53638 0.96142 1.19666 0.93723 0.74644 0.98934 1.48739 1.52785 1.13149 1.00490 1.76896 1.19135 1.05303 1.08768 1.24266 0.96594 0.95723 0.92694 1.19730 1.22725 0.97644 0.96163 1.19347 0.92952 0.89652 0.88840 1.67522 1.27511 1.37873 1.00070 1.25198 0.84523 0.81589 1.00213 1.68098 1.29006 1.23089 1.14456 1.17987 0.83338 0.84738 0.87636 1.44240 1.67944 1.08460 1.10434 1.22044 1.01467 0.87064 0.90735 1.20692 0.89982 0.88301 0.91844 0.86950 1.86648 1.27314 1.83702 1.38546 1.20410 0.93424 1.00892 1.01526 1.21135 1.00220 0.93258 0.95684 1.21596 0.96609 0.99427 0.96784 1.21455 0.93229 0.97129 0.98814 1.21440 1.02516 0.96106 0.97993 1.17821 0.87976 0.89771 0.98018 1.91486 1.70836 1.63166 1.87333 0.91662 0.92553 0.92876 0.74590 0.75186 0.73669 0.90183 0.91125 0.75756 0.82785 0.82537 0.82365 0.83566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.39 13.96 21.45 0.30 -59.09 16 2 C 0.02 1.19 5.47 84.65 0.46 1.65 16 3 Si 0.95 43.87 27.47 68.60 1.88 45.75 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 7 C -0.55 -33.69 9.94 25.60 0.25 -33.43 16 8 H 0.02 1.44 8.06 -2.91 -0.02 1.41 16 9 C 0.25 13.09 5.26 85.63 0.45 13.54 16 10 N -0.37 -17.88 3.63 -348.93 -1.27 -19.15 16 11 N -0.29 -12.38 12.45 -56.46 -0.70 -13.09 16 12 C 0.10 3.36 11.87 85.65 1.02 4.38 16 13 C -0.34 -12.31 6.14 -21.28 -0.13 -12.44 16 14 C 0.34 15.19 8.04 134.15 1.08 16.27 16 15 N -0.60 -25.58 10.47 -198.11 -2.07 -27.65 16 16 C 0.38 12.28 12.24 180.87 2.21 14.49 16 17 N -0.62 -18.51 9.69 -197.02 -1.91 -20.42 16 18 C 0.52 15.11 7.55 133.65 1.01 16.11 16 19 N -0.68 -13.44 5.63 -343.99 -1.94 -15.37 16 20 C 0.11 1.77 5.35 86.38 0.46 2.23 16 21 C 0.15 1.93 3.01 29.85 0.09 2.02 16 22 H 0.11 1.57 7.80 -2.39 -0.02 1.55 16 23 O -0.55 -6.53 12.94 -148.98 -1.93 -8.45 16 24 C -0.16 -1.99 5.07 -19.82 -0.10 -2.09 16 25 C -0.09 -0.70 9.30 22.26 0.21 -0.49 16 26 C -0.13 -0.80 10.05 22.27 0.22 -0.57 16 27 C -0.09 -0.61 10.04 22.26 0.22 -0.39 16 28 C -0.16 -1.75 10.03 22.31 0.22 -1.53 16 29 C 0.08 1.22 7.24 22.38 0.16 1.38 16 30 F -0.15 -2.72 16.57 44.97 0.75 -1.98 16 31 H 0.27 15.95 8.31 -92.70 -0.77 15.18 16 32 H 0.06 2.83 7.20 -2.39 -0.02 2.81 16 33 H 0.05 2.70 7.57 -2.39 -0.02 2.68 16 34 H 0.24 4.75 8.06 -2.91 -0.02 4.73 16 35 H 0.23 5.38 8.06 -2.91 -0.02 5.35 16 36 H 0.42 6.78 8.34 -92.71 -0.77 6.01 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.39 2.20 7.33 -74.06 -0.54 1.66 16 40 H 0.15 0.51 6.41 -2.91 -0.02 0.49 16 41 H 0.16 0.19 8.06 -2.91 -0.02 0.17 16 42 H 0.16 0.25 8.06 -2.91 -0.02 0.23 16 43 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -84.64 377.76 0.69 -83.95 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -0.27 Total: 14.35 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 7.85 Total: 21.15 kcal Atomic # 7 Polarization: -147.18 SS G_CDS: -7.59 Total: -154.76 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -1.93 Total: -8.45 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.75 Total: -1.98 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.75 kcal Total: -84.64 0.69 -83.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065534388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.472 kcal (2) G-P(sol) polarization free energy of solvation -84.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds