Wall clock time and date at job start Tue Mar 31 2020 04:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99701 * 2 1 4 4 H 1.48493 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47124 * 299.99885 * 3 2 1 6 6 H 1.48500 * 109.47226 * 59.99816 * 3 2 1 7 7 C 1.37876 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99649 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99959 * 359.97438 * 7 2 1 10 10 N 1.46508 * 109.46801 * 180.02562 * 9 7 2 11 11 N 1.40056 * 125.87464 * 269.99750 * 10 9 7 12 12 C 1.30249 * 109.69754 * 180.02562 * 11 10 9 13 13 C 1.41177 * 108.46752 * 359.76735 * 12 11 10 14 14 C 1.36316 * 125.87062 * 90.00289 * 10 9 7 15 15 N 1.33196 * 134.61562 * 359.97438 * 14 10 9 16 16 C 1.31505 * 120.68147 * 179.97438 * 15 14 10 17 17 N 1.32124 * 122.64964 * 0.02562 * 16 15 14 18 18 C 1.32868 * 121.19100 * 359.97438 * 17 16 15 19 19 N 1.38098 * 120.81375 * 179.97438 * 18 17 16 20 20 C 1.46500 * 120.00255 * 0.02562 * 19 18 17 21 21 C 1.52997 * 109.47473 * 179.97438 * 20 19 18 22 22 H 1.09001 * 109.47289 * 60.00327 * 21 20 19 23 23 O 1.42905 * 109.47264 * 300.00160 * 21 20 19 24 24 C 1.50697 * 109.47466 * 180.02562 * 21 20 19 25 25 C 1.38231 * 120.01211 * 94.72529 * 24 21 20 26 26 C 1.38222 * 120.02282 * 179.72434 * 25 24 21 27 27 C 1.38270 * 120.05332 * 0.55451 * 26 25 24 28 28 C 1.38179 * 120.02354 * 359.72356 * 27 26 25 29 29 C 1.38438 * 120.01318 * 275.00254 * 24 21 20 30 30 F 1.35091 * 120.02792 * 0.02562 * 29 24 21 31 31 H 0.96998 * 120.00227 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.47020 * 60.00731 * 9 7 2 33 33 H 1.08996 * 109.47048 * 300.00095 * 9 7 2 34 34 H 1.07996 * 125.77019 * 180.02562 * 12 11 10 35 35 H 1.08005 * 118.67889 * 179.97438 * 16 15 14 36 36 H 0.97004 * 120.00349 * 180.02562 * 19 18 17 37 37 H 1.09001 * 109.47049 * 60.00065 * 20 19 18 38 38 H 1.09002 * 109.47129 * 300.00137 * 20 19 18 39 39 H 0.96696 * 114.00036 * 299.99911 * 23 21 20 40 40 H 1.07994 * 119.98112 * 0.02562 * 25 24 21 41 41 H 1.08003 * 119.97310 * 180.27604 * 26 25 24 42 42 H 1.07993 * 119.98522 * 179.74515 * 27 26 25 43 43 H 1.07995 * 120.01145 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 7 2.2033 -3.6126 0.0027 11 7 2.7367 -4.2375 -1.1316 12 6 3.5492 -5.1882 -0.7679 13 6 3.5898 -5.2265 0.6428 14 6 2.7224 -4.2187 1.1079 15 7 2.5796 -4.0500 2.4214 16 6 3.2319 -4.8131 3.2708 17 7 4.0519 -5.7734 2.8819 18 6 4.2610 -6.0197 1.5931 19 7 5.1202 -7.0250 1.1954 20 6 5.8139 -7.8356 2.1993 21 6 6.6969 -8.8699 1.4984 22 1 7.4301 -8.3587 0.8745 23 8 5.8839 -9.7156 0.6823 24 6 7.4100 -9.7042 2.5311 25 6 6.8740 -10.9131 2.9336 26 6 7.5307 -11.6811 3.8766 27 6 8.7186 -11.2360 4.4269 28 6 9.2533 -10.0252 4.0303 29 6 8.5992 -9.2575 3.0813 30 9 9.1209 -8.0733 2.6932 31 1 -0.4850 0.8400 -0.0004 32 1 0.6243 -2.5575 -0.8881 33 1 0.6249 -2.5563 0.8919 34 1 4.1021 -5.8350 -1.4330 35 1 3.0923 -4.6478 4.3289 36 1 5.2645 -7.1945 0.2512 37 1 5.0808 -8.3472 2.8230 38 1 6.4337 -7.1905 2.8221 39 1 5.2077 -10.2030 1.1723 40 1 5.9442 -11.2597 2.5075 41 1 7.1134 -12.6276 4.1872 42 1 9.2286 -11.8350 5.1666 43 1 10.1813 -9.6779 4.4598 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065534391.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:43 Heat of formation + Delta-G solvation = 50.107918 kcal Electronic energy + Delta-G solvation = -30077.005084 eV Core-core repulsion = 25652.415836 eV Total energy + Delta-G solvation = -4424.589248 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 357.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.34614 -41.36608 -40.07103 -38.51906 -37.73831 -35.77970 -33.71913 -32.59442 -31.92226 -31.26892 -31.08773 -29.97390 -27.93060 -27.10743 -24.41658 -23.92119 -23.26003 -23.10576 -22.15739 -21.75210 -20.07928 -18.57380 -18.02196 -17.54918 -17.19509 -16.92039 -16.64942 -16.49644 -16.04534 -15.71145 -15.60469 -14.99818 -14.94239 -14.76620 -14.48650 -14.30554 -13.90531 -13.75067 -13.65669 -13.48173 -13.26783 -12.93625 -12.76533 -12.53116 -12.13903 -11.89177 -11.65585 -11.61490 -11.20330 -10.98867 -10.94241 -10.75655 -10.74716 -10.27426 -10.06974 -9.79951 -9.52784 -9.25461 -9.17745 -8.67132 -8.58389 -8.20259 -7.62512 -6.20464 -4.26663 0.57713 0.66601 1.32306 1.95584 2.85830 3.01415 3.07493 3.14222 3.24655 3.31626 3.38672 3.70854 3.85912 4.01019 4.20677 4.32696 4.34083 4.41265 4.46460 4.62209 4.64247 4.76437 4.76867 4.87137 5.00530 5.14874 5.18563 5.26229 5.39331 5.43623 5.47983 5.60884 5.63233 5.74095 5.78076 5.85405 6.31705 6.33243 6.69127 6.90268 7.03794 7.05126 7.12708 7.24177 7.52186 7.74009 7.92036 7.94189 8.25223 8.73831 8.84231 9.38308 10.87809 Molecular weight = 357.13amu Principal moments of inertia in cm(-1) A = 0.020565 B = 0.001963 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.240840 B =14259.497299 C =14586.184911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.062 0.938 9 C 0.263 3.737 10 N -0.332 5.332 11 N -0.243 5.243 12 C 0.069 3.931 13 C -0.336 4.336 14 C 0.363 3.637 15 N -0.554 5.554 16 C 0.366 3.634 17 N -0.620 5.620 18 C 0.509 3.491 19 N -0.702 5.702 20 C 0.108 3.892 21 C 0.138 3.862 22 H 0.119 0.881 23 O -0.546 6.546 24 C -0.149 4.149 25 C -0.080 4.080 26 C -0.127 4.127 27 C -0.089 4.089 28 C -0.152 4.152 29 C 0.111 3.889 30 F -0.133 7.133 31 H 0.267 0.733 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.183 0.817 35 H 0.195 0.805 36 H 0.414 0.586 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.378 0.622 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.316 -26.209 8.332 31.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.734 3.266 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.570 4.570 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.118 5.118 11 N -0.059 5.059 12 C -0.126 4.126 13 C -0.354 4.354 14 C 0.115 3.885 15 N -0.278 5.278 16 C 0.072 3.928 17 N -0.351 5.351 18 C 0.257 3.743 19 N -0.336 5.336 20 C -0.017 4.017 21 C 0.078 3.922 22 H 0.136 0.864 23 O -0.353 6.353 24 C -0.151 4.151 25 C -0.098 4.098 26 C -0.145 4.145 27 C -0.107 4.107 28 C -0.171 4.171 29 C 0.092 3.908 30 F -0.112 7.112 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.200 0.800 35 H 0.211 0.789 36 H 0.251 0.749 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.226 0.774 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 15.736 -24.858 7.820 30.442 hybrid contribution 0.781 0.420 -0.022 0.887 sum 16.516 -24.438 7.797 30.509 Atomic orbital electron populations 1.69928 1.05991 1.27505 1.49505 1.24904 0.94991 0.99379 0.94487 0.86284 0.79949 0.82542 0.77779 1.19708 1.20654 1.20590 1.21288 0.93590 0.89666 1.52504 0.92001 1.19800 0.85701 0.79877 0.99993 1.49459 1.35829 1.27741 0.98791 1.76942 1.11563 1.08032 1.09360 1.23389 0.99007 0.97846 0.92331 1.19598 1.12568 1.07865 0.95342 1.18942 0.91099 0.89980 0.88522 1.67513 1.29605 1.30735 0.99984 1.24396 0.85184 0.84032 0.99164 1.67944 1.26744 1.25831 1.14559 1.17877 0.84195 0.84019 0.88246 1.44105 1.46238 1.34071 1.09174 1.21900 0.95679 0.92916 0.91156 1.20955 0.91992 0.88710 0.90534 0.86387 1.86661 1.49873 1.61404 1.37326 1.20410 0.95831 0.97981 1.00903 1.20799 0.99797 0.92921 0.96323 1.21213 0.95674 1.00391 0.97201 1.21089 0.95616 0.95043 0.98948 1.21204 1.01619 0.95825 0.98425 1.17491 0.93253 0.82852 0.97230 1.91534 1.86137 1.43812 1.89705 0.92332 0.92783 0.92254 0.80018 0.78895 0.74882 0.90821 0.90313 0.77357 0.84879 0.85017 0.84833 0.84454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 3 Si 0.91 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.53 -15.37 9.39 -34.44 -0.32 -15.69 16 8 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 9 C 0.26 7.10 6.19 -5.19 -0.03 7.07 16 10 N -0.33 -8.06 3.63 -61.64 -0.22 -8.28 16 11 N -0.24 -5.29 12.45 30.80 0.38 -4.91 16 12 C 0.07 1.20 11.87 -17.11 -0.20 1.00 16 13 C -0.34 -6.20 6.14 -106.81 -0.66 -6.86 16 14 C 0.36 8.12 8.04 -156.23 -1.26 6.86 16 15 N -0.55 -11.81 10.47 -13.97 -0.15 -11.96 16 16 C 0.37 6.23 12.24 -92.12 -1.13 5.10 16 17 N -0.62 -9.95 9.69 -13.62 -0.13 -10.08 16 18 C 0.51 7.96 7.55 -154.86 -1.17 6.79 16 19 N -0.70 -7.91 5.57 -60.08 -0.33 -8.24 16 20 C 0.11 1.00 5.38 -4.04 -0.02 0.97 16 21 C 0.14 1.03 3.07 -27.89 -0.09 0.94 16 22 H 0.12 0.95 7.79 -51.93 -0.40 0.55 16 23 O -0.55 -3.84 12.74 -35.23 -0.45 -4.28 16 24 C -0.15 -1.07 5.07 -104.55 -0.53 -1.60 16 25 C -0.08 -0.43 9.30 -39.59 -0.37 -0.80 16 26 C -0.13 -0.59 10.04 -39.58 -0.40 -0.99 16 27 C -0.09 -0.43 10.04 -39.59 -0.40 -0.83 16 28 C -0.15 -0.96 10.03 -39.51 -0.40 -1.36 16 29 C 0.11 0.89 7.24 -39.42 -0.29 0.61 16 30 F -0.13 -1.28 16.57 2.25 0.04 -1.24 16 31 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.05 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 34 H 0.18 2.20 8.06 -52.49 -0.42 1.78 16 35 H 0.19 2.49 8.06 -52.48 -0.42 2.06 16 36 H 0.41 4.02 8.21 -40.82 -0.34 3.69 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.38 1.53 7.32 45.56 0.33 1.86 16 40 H 0.13 0.42 6.41 -52.49 -0.34 0.09 16 41 H 0.13 0.33 8.06 -52.48 -0.42 -0.09 16 42 H 0.13 0.34 8.06 -52.49 -0.42 -0.09 16 43 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 381.04 15.07 5.74 5.74 Total: -1.00 -34.97 381.04 -10.85 -45.82 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -4.09 Total: 2.76 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: -7.35 Total: 2.98 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: 0.28 Total: -68.72 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.45 Total: -4.28 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.97 -10.85 -45.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065534391.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.931 kcal (2) G-P(sol) polarization free energy of solvation -34.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds