Wall clock time and date at job start Tue Mar 31 2020 04:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99701 * 2 1 4 4 H 1.48493 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47124 * 299.99885 * 3 2 1 6 6 H 1.48500 * 109.47226 * 59.99816 * 3 2 1 7 7 C 1.37876 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99649 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99959 * 359.97438 * 7 2 1 10 10 N 1.46508 * 109.46801 * 180.02562 * 9 7 2 11 11 N 1.40056 * 125.87464 * 269.99750 * 10 9 7 12 12 C 1.30249 * 109.69754 * 180.02562 * 11 10 9 13 13 C 1.41177 * 108.46752 * 359.76735 * 12 11 10 14 14 C 1.36316 * 125.87062 * 90.00289 * 10 9 7 15 15 N 1.33196 * 134.61562 * 359.97438 * 14 10 9 16 16 C 1.31505 * 120.68147 * 179.97438 * 15 14 10 17 17 N 1.32124 * 122.64964 * 0.02562 * 16 15 14 18 18 C 1.32868 * 121.19100 * 359.97438 * 17 16 15 19 19 N 1.38098 * 120.81375 * 179.97438 * 18 17 16 20 20 C 1.46500 * 120.00255 * 0.02562 * 19 18 17 21 21 C 1.52997 * 109.47473 * 179.97438 * 20 19 18 22 22 H 1.09001 * 109.47289 * 60.00327 * 21 20 19 23 23 O 1.42905 * 109.47264 * 300.00160 * 21 20 19 24 24 C 1.50697 * 109.47466 * 180.02562 * 21 20 19 25 25 C 1.38231 * 120.01211 * 94.72529 * 24 21 20 26 26 C 1.38222 * 120.02282 * 179.72434 * 25 24 21 27 27 C 1.38270 * 120.05332 * 0.55451 * 26 25 24 28 28 C 1.38179 * 120.02354 * 359.72356 * 27 26 25 29 29 C 1.38438 * 120.01318 * 275.00254 * 24 21 20 30 30 F 1.35091 * 120.02792 * 0.02562 * 29 24 21 31 31 H 0.96998 * 120.00227 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.47020 * 60.00731 * 9 7 2 33 33 H 1.08996 * 109.47048 * 300.00095 * 9 7 2 34 34 H 1.07996 * 125.77019 * 180.02562 * 12 11 10 35 35 H 1.08005 * 118.67889 * 179.97438 * 16 15 14 36 36 H 0.97004 * 120.00349 * 180.02562 * 19 18 17 37 37 H 1.09001 * 109.47049 * 60.00065 * 20 19 18 38 38 H 1.09002 * 109.47129 * 300.00137 * 20 19 18 39 39 H 0.96696 * 114.00036 * 299.99911 * 23 21 20 40 40 H 1.07994 * 119.98112 * 0.02562 * 25 24 21 41 41 H 1.08003 * 119.97310 * 180.27604 * 26 25 24 42 42 H 1.07993 * 119.98522 * 179.74515 * 27 26 25 43 43 H 1.07995 * 120.01145 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 7 2.2033 -3.6126 0.0027 11 7 2.7367 -4.2375 -1.1316 12 6 3.5492 -5.1882 -0.7679 13 6 3.5898 -5.2265 0.6428 14 6 2.7224 -4.2187 1.1079 15 7 2.5796 -4.0500 2.4214 16 6 3.2319 -4.8131 3.2708 17 7 4.0519 -5.7734 2.8819 18 6 4.2610 -6.0197 1.5931 19 7 5.1202 -7.0250 1.1954 20 6 5.8139 -7.8356 2.1993 21 6 6.6969 -8.8699 1.4984 22 1 7.4301 -8.3587 0.8745 23 8 5.8839 -9.7156 0.6823 24 6 7.4100 -9.7042 2.5311 25 6 6.8740 -10.9131 2.9336 26 6 7.5307 -11.6811 3.8766 27 6 8.7186 -11.2360 4.4269 28 6 9.2533 -10.0252 4.0303 29 6 8.5992 -9.2575 3.0813 30 9 9.1209 -8.0733 2.6932 31 1 -0.4850 0.8400 -0.0004 32 1 0.6243 -2.5575 -0.8881 33 1 0.6249 -2.5563 0.8919 34 1 4.1021 -5.8350 -1.4330 35 1 3.0923 -4.6478 4.3289 36 1 5.2645 -7.1945 0.2512 37 1 5.0808 -8.3472 2.8230 38 1 6.4337 -7.1905 2.8221 39 1 5.2077 -10.2030 1.1723 40 1 5.9442 -11.2597 2.5075 41 1 7.1134 -12.6276 4.1872 42 1 9.2286 -11.8350 5.1666 43 1 10.1813 -9.6779 4.4598 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065534391.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:42 Heat of formation + Delta-G solvation = 26.957895 kcal Electronic energy + Delta-G solvation = -30078.008945 eV Core-core repulsion = 25652.415836 eV Total energy + Delta-G solvation = -4425.593108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 357.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.95083 -42.83240 -40.60295 -39.83227 -38.45248 -36.82978 -35.70903 -33.85854 -33.00469 -32.67150 -31.55659 -31.14737 -29.30157 -28.56955 -25.66997 -25.24967 -24.72456 -23.66540 -23.41351 -22.34397 -21.55623 -19.43911 -19.17584 -18.81795 -18.59202 -17.87971 -17.70501 -17.61813 -16.89146 -16.73970 -16.61293 -16.28496 -16.04706 -15.74079 -15.43472 -15.12304 -15.05615 -14.93555 -14.85314 -14.67030 -14.26848 -14.07262 -13.71413 -13.67333 -13.40706 -13.04612 -12.93375 -12.76479 -12.45501 -12.41688 -12.33825 -12.26938 -12.11422 -11.79156 -11.52995 -11.31471 -10.76780 -10.65102 -10.10067 -9.94633 -9.78677 -9.64218 -9.02302 -8.36516 -6.53317 -0.05479 0.13200 0.25170 0.50564 1.31808 1.34163 1.38349 1.49781 1.62057 1.93365 2.30882 2.62214 2.92985 2.99152 3.21077 3.24178 3.36210 3.38558 3.47019 3.63116 3.76078 3.81155 3.83649 4.01662 4.09143 4.18742 4.39082 4.40169 4.41459 4.68125 4.77489 4.82447 4.85986 4.91081 5.07455 5.11462 5.21026 5.36358 5.46886 5.47775 5.52739 5.71922 5.77125 5.92322 5.93276 6.08800 6.51188 6.54931 6.64907 6.77016 7.16094 7.43251 8.71361 Molecular weight = 357.13amu Principal moments of inertia in cm(-1) A = 0.020565 B = 0.001963 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.240840 B =14259.497299 C =14586.184911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.976 3.024 4 H -0.275 1.275 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.551 4.551 8 H 0.044 0.956 9 C 0.284 3.716 10 N -0.365 5.365 11 N -0.289 5.289 12 C 0.100 3.900 13 C -0.344 4.344 14 C 0.336 3.664 15 N -0.603 5.603 16 C 0.376 3.624 17 N -0.616 5.616 18 C 0.517 3.483 19 N -0.678 5.678 20 C 0.111 3.889 21 C 0.152 3.848 22 H 0.110 0.890 23 O -0.552 6.552 24 C -0.161 4.161 25 C -0.084 4.084 26 C -0.126 4.126 27 C -0.088 4.088 28 C -0.163 4.163 29 C 0.082 3.918 30 F -0.151 7.151 31 H 0.274 0.726 32 H 0.032 0.968 33 H 0.033 0.967 34 H 0.238 0.762 35 H 0.231 0.769 36 H 0.424 0.576 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.392 0.608 40 H 0.156 0.844 41 H 0.158 0.842 42 H 0.159 0.841 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.213 -28.678 9.179 35.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.182 4.182 3 Si 0.800 3.200 4 H -0.200 1.200 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.589 4.589 8 H 0.063 0.937 9 C 0.165 3.835 10 N -0.152 5.152 11 N -0.104 5.104 12 C -0.095 4.095 13 C -0.362 4.362 14 C 0.089 3.911 15 N -0.331 5.331 16 C 0.083 3.917 17 N -0.347 5.347 18 C 0.263 3.737 19 N -0.311 5.311 20 C -0.013 4.013 21 C 0.092 3.908 22 H 0.128 0.872 23 O -0.360 6.360 24 C -0.163 4.163 25 C -0.102 4.102 26 C -0.144 4.144 27 C -0.106 4.106 28 C -0.181 4.181 29 C 0.063 3.937 30 F -0.129 7.129 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.254 0.746 35 H 0.247 0.753 36 H 0.264 0.736 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.243 0.757 40 H 0.174 0.826 41 H 0.176 0.824 42 H 0.176 0.824 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 17.670 -27.407 8.659 33.739 hybrid contribution 0.317 0.893 -0.157 0.961 sum 17.987 -26.513 8.502 33.148 Atomic orbital electron populations 1.70018 1.07329 1.28844 1.49518 1.25805 0.95942 1.02868 0.93596 0.85243 0.78171 0.78009 0.78609 1.20012 1.19178 1.19329 1.21404 0.92828 0.91204 1.53482 0.93734 1.19134 0.85950 0.80866 0.97514 1.49100 1.37204 1.28494 1.00392 1.76891 1.14134 1.10277 1.09118 1.24257 0.96492 0.96029 0.92672 1.19728 1.12638 1.07724 0.96144 1.19365 0.91937 0.90940 0.88833 1.67530 1.32112 1.33197 1.00212 1.25178 0.83543 0.82770 1.00164 1.68102 1.26582 1.25553 1.14463 1.17977 0.83958 0.84141 0.87617 1.44208 1.44129 1.32286 1.10439 1.22024 0.95736 0.92818 0.90752 1.20675 0.91413 0.88329 0.90350 0.87212 1.86647 1.50339 1.61395 1.37656 1.20419 0.95816 0.98783 1.01235 1.21141 1.00594 0.92185 0.96244 1.21602 0.95314 1.01118 0.96339 1.21455 0.95717 0.94495 0.98959 1.21439 1.02079 0.96383 0.98235 1.17848 0.94319 0.82910 0.98643 1.91484 1.86497 1.44888 1.90065 0.91674 0.95013 0.94867 0.74623 0.75302 0.73632 0.89948 0.91447 0.75724 0.82608 0.82433 0.82378 0.83682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.08 13.29 21.45 0.28 -54.79 16 2 C 0.02 1.08 5.46 84.65 0.46 1.54 16 3 Si 0.98 45.73 29.54 68.60 2.03 47.75 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 5 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.55 -33.35 9.39 25.60 0.24 -33.11 16 8 H 0.04 2.78 7.81 -2.91 -0.02 2.76 16 9 C 0.28 16.41 6.19 85.63 0.53 16.94 16 10 N -0.37 -18.65 3.63 -348.93 -1.27 -19.91 16 11 N -0.29 -12.88 12.45 -56.46 -0.70 -13.59 16 12 C 0.10 3.36 11.87 85.65 1.02 4.38 16 13 C -0.34 -12.50 6.14 -21.28 -0.13 -12.63 16 14 C 0.34 15.50 8.04 134.14 1.08 16.58 16 15 N -0.60 -26.41 10.47 -198.10 -2.07 -28.49 16 16 C 0.38 12.52 12.24 180.87 2.21 14.74 16 17 N -0.62 -18.78 9.69 -197.01 -1.91 -20.69 16 18 C 0.52 15.28 7.55 133.64 1.01 16.29 16 19 N -0.68 -13.51 5.57 -344.01 -1.92 -15.43 16 20 C 0.11 1.78 5.38 86.38 0.46 2.24 16 21 C 0.15 1.94 3.07 29.85 0.09 2.03 16 22 H 0.11 1.60 7.79 -2.39 -0.02 1.58 16 23 O -0.55 -6.07 12.74 -148.98 -1.90 -7.97 16 24 C -0.16 -1.99 5.07 -19.82 -0.10 -2.09 16 25 C -0.08 -0.65 9.30 22.26 0.21 -0.45 16 26 C -0.13 -0.76 10.04 22.27 0.22 -0.53 16 27 C -0.09 -0.62 10.04 22.26 0.22 -0.39 16 28 C -0.16 -1.82 10.03 22.31 0.22 -1.60 16 29 C 0.08 1.24 7.24 22.38 0.16 1.40 16 30 F -0.15 -2.88 16.57 44.97 0.75 -2.14 16 31 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 32 H 0.03 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.03 2.03 8.14 -2.39 -0.02 2.02 16 34 H 0.24 4.86 8.06 -2.91 -0.02 4.83 16 35 H 0.23 5.53 8.06 -2.91 -0.02 5.51 16 36 H 0.42 6.87 8.21 -92.71 -0.76 6.10 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.39 1.76 7.32 -74.06 -0.54 1.22 16 40 H 0.16 0.39 6.41 -2.91 -0.02 0.37 16 41 H 0.16 0.11 8.06 -2.91 -0.02 0.09 16 42 H 0.16 0.26 8.06 -2.91 -0.02 0.23 16 43 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -80.76 381.04 1.00 -79.76 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -0.21 Total: 10.14 kcal Atomic # 6 Polarization: 17.43 SS G_CDS: 7.92 Total: 25.35 kcal Atomic # 7 Polarization: -145.31 SS G_CDS: -7.58 Total: -152.90 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -1.90 Total: -7.97 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.75 Total: -2.14 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -80.76 1.00 -79.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065534391.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.718 kcal (2) G-P(sol) polarization free energy of solvation -80.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds