Wall clock time and date at job start Tue Mar 31 2020 05:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35248 * 126.69557 * 2 1 4 4 C 1.42018 * 103.95484 * 179.97438 * 3 2 1 5 5 N 1.39509 * 126.89281 * 179.97438 * 4 3 2 6 6 C 1.34770 * 119.99744 * 359.97438 * 5 4 3 7 7 O 1.21277 * 120.00394 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00054 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.47588 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47223 * 180.02562 * 9 8 6 11 11 O 1.21284 * 120.00298 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99920 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99680 * 5.01607 * 12 10 9 14 14 C 1.50708 * 109.46868 * 269.72351 * 13 12 10 15 15 H 1.07993 * 119.99840 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99514 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00115 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99631 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47031 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47173 * 120.00079 * 18 16 14 21 21 H 1.48495 * 109.47282 * 240.00265 * 18 16 14 22 22 C 1.39926 * 119.99929 * 184.74443 * 12 10 9 23 23 C 1.38866 * 120.07372 * 67.65892 * 22 12 10 24 24 C 1.38107 * 119.93042 * 179.70183 * 23 22 12 25 25 C 1.38288 * 120.06951 * 0.57278 * 24 23 22 26 26 C 1.38281 * 120.13973 * 359.72129 * 25 24 23 27 27 C 1.38112 * 120.07224 * 359.97438 * 26 25 24 28 28 N 1.30715 * 106.21561 * 0.24250 * 4 3 2 29 29 O 1.20916 * 111.47430 * 359.57104 * 28 4 3 30 30 H 1.09004 * 109.47384 * 89.99652 * 1 2 3 31 31 H 1.09002 * 109.47415 * 209.99980 * 1 2 3 32 32 H 1.09001 * 109.47233 * 329.99813 * 1 2 3 33 33 H 1.08000 * 128.02011 * 359.95669 * 3 2 1 34 34 H 0.96996 * 119.99983 * 180.02562 * 5 4 3 35 35 H 1.09005 * 109.47294 * 60.00091 * 8 6 5 36 36 H 1.09001 * 109.47098 * 300.00685 * 8 6 5 37 37 H 1.09007 * 109.47072 * 60.00325 * 9 8 6 38 38 H 1.09001 * 109.47144 * 300.00270 * 9 8 6 39 39 H 1.08996 * 109.47482 * 29.72373 * 13 12 10 40 40 H 1.09000 * 109.47187 * 149.72971 * 13 12 10 41 41 H 0.97002 * 119.99786 * 179.97438 * 17 16 14 42 42 H 1.08004 * 120.03453 * 359.97438 * 23 22 12 43 43 H 1.08000 * 119.96957 * 180.30102 * 24 23 22 44 44 H 1.07999 * 119.93244 * 179.70588 * 25 24 23 45 45 H 1.08001 * 119.96645 * 180.02562 * 26 25 24 46 46 H 1.08001 * 120.03932 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.0844 0.0000 4 6 3.6249 0.5355 0.0006 5 7 4.8286 1.2407 0.0004 6 6 4.8200 2.5884 -0.0011 7 8 3.7658 3.1881 -0.0017 8 6 6.1202 3.3503 -0.0008 9 6 5.8310 4.8527 -0.0020 10 6 7.1313 5.6145 -0.0023 11 8 8.1855 5.0149 -0.0012 12 7 7.1227 6.9623 -0.0028 13 6 5.8541 7.6867 0.1079 14 6 5.2982 7.9397 -1.2699 15 1 5.8359 7.5950 -2.1407 16 6 4.1032 8.6112 -1.4185 17 7 3.4488 9.0314 -0.3579 18 14 3.4139 8.9242 -3.1261 19 1 4.3338 8.3546 -4.1433 20 1 2.0817 8.2796 -3.2480 21 1 3.2779 10.3867 -3.3447 22 6 8.3258 7.6696 -0.1033 23 6 9.0623 7.6262 -1.2798 24 6 10.2463 8.3304 -1.3779 25 6 10.7046 9.0686 -0.3021 26 6 9.9766 9.1090 0.8728 27 6 8.7886 8.4121 0.9752 28 7 3.4764 -0.7632 -0.0044 29 8 2.3082 -1.0752 0.0006 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 2.0305 2.1262 -0.0006 34 1 5.6717 0.7611 0.0005 35 1 6.6942 3.0897 -0.8900 36 1 6.6927 3.0915 0.8899 37 1 5.2572 5.1130 0.8876 38 1 5.2583 5.1118 -0.8925 39 1 5.1445 7.0911 0.6822 40 1 6.0219 8.6383 0.6123 41 1 2.6082 9.5042 -0.4625 42 1 8.7074 7.0459 -2.1187 43 1 10.8172 8.3010 -2.2942 44 1 11.6332 9.6146 -0.3797 45 1 10.3369 9.6868 1.7111 46 1 8.2207 8.4436 1.8933 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066618900.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:06 Heat of formation + Delta-G solvation = 20.719502 kcal Electronic energy + Delta-G solvation = -30780.924849 eV Core-core repulsion = 26446.228777 eV Total energy + Delta-G solvation = -4334.696071 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.94971 -40.32126 -39.74924 -37.99833 -35.70498 -35.10438 -33.77676 -32.98010 -32.61957 -31.82381 -30.54391 -29.60581 -27.96168 -27.16735 -25.92029 -23.66061 -23.17841 -22.24418 -21.95596 -21.16517 -20.53155 -18.74289 -17.78316 -17.54709 -17.33986 -16.85285 -16.60355 -16.57595 -15.90057 -15.80688 -15.50860 -14.90957 -14.45683 -14.19597 -14.05706 -14.00461 -13.68977 -13.55375 -13.47457 -13.06642 -12.83237 -12.75117 -12.60051 -12.38498 -12.19804 -11.89942 -11.72189 -11.44754 -11.34726 -11.30477 -11.05878 -10.97117 -10.79600 -10.77476 -10.23110 -10.05073 -9.85311 -9.50967 -9.31357 -8.93836 -8.64584 -8.58845 -8.53780 -7.71610 -6.21671 -4.28885 1.28937 1.71687 1.79921 1.91962 2.42309 2.78234 3.03140 3.17790 3.21289 3.29939 3.33573 3.71148 4.15378 4.18454 4.32343 4.55515 4.75660 4.93554 5.05983 5.12297 5.14230 5.17194 5.23703 5.27577 5.30037 5.37714 5.43117 5.46169 5.63870 5.73058 5.79080 5.88295 5.93947 6.01553 6.11033 6.29672 6.37717 6.41239 6.63544 6.81959 6.84722 6.91776 6.97831 7.11591 7.21455 7.58491 7.72696 7.88623 7.97948 8.11383 8.19871 8.70524 8.85518 9.38834 10.85630 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.009660 B = 0.002666 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.781797 B =10499.637517 C =12697.423076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.027 4.027 3 C -0.225 4.225 4 C 0.252 3.748 5 N -0.637 5.637 6 C 0.522 3.478 7 O -0.500 6.500 8 C -0.117 4.117 9 C -0.119 4.119 10 C 0.523 3.477 11 O -0.565 6.565 12 N -0.560 5.560 13 C 0.238 3.762 14 C -0.538 4.538 15 H 0.062 0.938 16 C 0.068 3.932 17 N -0.888 5.888 18 Si 0.896 3.104 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.282 1.282 22 C 0.175 3.825 23 C -0.107 4.107 24 C -0.114 4.114 25 C -0.136 4.136 26 C -0.114 4.114 27 C -0.125 4.125 28 N -0.397 5.397 29 O 0.092 5.908 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.192 0.808 34 H 0.419 0.581 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.117 0.883 39 H 0.045 0.955 40 H 0.039 0.961 41 H 0.265 0.735 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.513 -11.788 2.109 12.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.091 4.091 3 C -0.248 4.248 4 C 0.002 3.998 5 N -0.289 5.289 6 C 0.310 3.690 7 O -0.372 6.372 8 C -0.157 4.157 9 C -0.159 4.159 10 C 0.313 3.687 11 O -0.445 6.445 12 N -0.287 5.287 13 C 0.119 3.881 14 C -0.577 4.577 15 H 0.080 0.920 16 C -0.135 4.135 17 N -0.526 5.526 18 Si 0.724 3.276 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.208 1.208 22 C 0.084 3.916 23 C -0.127 4.127 24 C -0.132 4.132 25 C -0.154 4.154 26 C -0.132 4.132 27 C -0.144 4.144 28 N -0.114 5.114 29 O 0.032 5.968 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.209 0.791 34 H 0.256 0.744 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.135 0.865 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.137 0.863 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.898 -12.532 2.173 12.859 hybrid contribution -0.426 0.912 -0.965 1.395 sum 1.472 -11.619 1.208 11.774 Atomic orbital electron populations 1.20342 0.83771 1.04692 1.04205 1.24443 0.96478 0.85847 1.02338 1.22809 0.89304 1.02322 1.10382 1.20600 0.88801 0.88793 1.01569 1.42740 1.05937 1.06759 1.73513 1.21172 0.92847 0.80292 0.74723 1.90714 1.32951 1.67612 1.45897 1.21388 0.93021 0.95159 1.06129 1.21355 0.96077 0.91087 1.07397 1.20499 0.90796 0.82075 0.75361 1.90632 1.33468 1.68664 1.51716 1.45963 1.07285 1.05244 1.70169 1.19625 0.77777 0.92524 0.98145 1.21420 1.06215 1.37779 0.92272 0.91997 1.24901 0.96444 0.95002 0.97156 1.69919 1.16059 1.37938 1.28707 0.86463 0.79054 0.78057 0.84073 1.19663 1.20708 1.20821 1.17587 0.86970 0.94091 0.92913 1.21217 0.95255 0.99364 0.96827 1.20940 0.96122 0.97585 0.98594 1.21014 1.00056 1.00544 0.93794 1.20906 0.94903 0.99567 0.97867 1.21214 0.96443 0.98809 0.97968 1.74015 0.97626 1.13231 1.26523 1.84771 1.10453 1.32394 1.69180 0.89330 0.89874 0.88789 0.79075 0.74409 0.87576 0.87699 0.87953 0.86535 0.93667 0.94292 0.92484 0.86319 0.86332 0.86534 0.86256 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.45 36.00 0.38 -0.08 16 2 C -0.03 -0.30 7.48 -35.37 -0.26 -0.56 16 3 C -0.23 -2.99 9.79 -39.20 -0.38 -3.37 16 4 C 0.25 3.46 8.18 -154.82 -1.27 2.20 16 5 N -0.64 -7.72 5.42 -11.44 -0.06 -7.78 16 6 C 0.52 7.25 7.79 -10.99 -0.09 7.16 16 7 O -0.50 -8.58 13.26 5.56 0.07 -8.50 16 8 C -0.12 -1.54 4.99 -27.88 -0.14 -1.68 16 9 C -0.12 -2.03 3.66 -27.88 -0.10 -2.13 16 10 C 0.52 10.20 7.52 -10.98 -0.08 10.12 16 11 O -0.56 -11.64 15.73 5.55 0.09 -11.55 16 12 N -0.56 -11.65 2.51 -114.73 -0.29 -11.94 16 13 C 0.24 5.54 4.88 -5.19 -0.03 5.51 16 14 C -0.54 -13.78 9.18 -34.43 -0.32 -14.10 16 15 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 16 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 17 N -0.89 -24.30 13.29 55.43 0.74 -23.56 16 18 Si 0.90 20.58 29.54 -169.99 -5.02 15.55 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 C 0.18 3.49 4.76 -83.69 -0.40 3.09 16 23 C -0.11 -1.99 9.54 -39.40 -0.38 -2.36 16 24 C -0.11 -1.76 10.04 -39.61 -0.40 -2.16 16 25 C -0.14 -1.93 10.04 -39.55 -0.40 -2.33 16 26 C -0.11 -1.70 10.04 -39.61 -0.40 -2.10 16 27 C -0.12 -2.21 9.68 -39.39 -0.38 -2.59 16 28 N -0.40 -5.43 12.10 31.19 0.38 -5.06 16 29 O 0.09 1.13 11.19 17.05 0.19 1.32 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.19 2.73 6.22 -52.49 -0.33 2.40 16 34 H 0.42 3.84 8.82 -40.82 -0.36 3.48 16 35 H 0.11 1.29 8.10 -51.93 -0.42 0.87 16 36 H 0.10 1.23 8.10 -51.93 -0.42 0.81 16 37 H 0.10 1.77 7.21 -51.92 -0.37 1.39 16 38 H 0.12 2.19 7.89 -51.93 -0.41 1.78 16 39 H 0.05 1.07 6.46 -51.93 -0.34 0.74 16 40 H 0.04 0.97 7.85 -51.93 -0.41 0.56 16 41 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 42 H 0.12 2.23 8.06 -52.48 -0.42 1.81 16 43 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 44 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 45 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 46 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 399.33 15.07 6.02 6.02 Total: -1.00 -32.19 399.33 -8.60 -40.79 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -5.98 Total: 8.40 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -4.73 Total: -3.69 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.76 Total: -48.34 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: 0.35 Total: -18.73 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.19 -8.60 -40.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066618900.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.513 kcal (2) G-P(sol) polarization free energy of solvation -32.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds