Wall clock time and date at job start Tue Mar 31 2020 05:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35248 * 126.69557 * 2 1 4 4 C 1.42018 * 103.95484 * 179.97438 * 3 2 1 5 5 N 1.39509 * 126.89281 * 179.97438 * 4 3 2 6 6 C 1.34770 * 119.99744 * 359.97438 * 5 4 3 7 7 O 1.21277 * 120.00394 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00054 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.47588 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47223 * 180.02562 * 9 8 6 11 11 O 1.21284 * 120.00298 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99920 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99680 * 5.01607 * 12 10 9 14 14 C 1.50708 * 109.46868 * 269.72351 * 13 12 10 15 15 H 1.07993 * 119.99840 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99514 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00115 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99631 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47031 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47173 * 120.00079 * 18 16 14 21 21 H 1.48495 * 109.47282 * 240.00265 * 18 16 14 22 22 C 1.39926 * 119.99929 * 184.74443 * 12 10 9 23 23 C 1.38866 * 120.07372 * 67.65892 * 22 12 10 24 24 C 1.38107 * 119.93042 * 179.70183 * 23 22 12 25 25 C 1.38288 * 120.06951 * 0.57278 * 24 23 22 26 26 C 1.38281 * 120.13973 * 359.72129 * 25 24 23 27 27 C 1.38112 * 120.07224 * 359.97438 * 26 25 24 28 28 N 1.30715 * 106.21561 * 0.24250 * 4 3 2 29 29 O 1.20916 * 111.47430 * 359.57104 * 28 4 3 30 30 H 1.09004 * 109.47384 * 89.99652 * 1 2 3 31 31 H 1.09002 * 109.47415 * 209.99980 * 1 2 3 32 32 H 1.09001 * 109.47233 * 329.99813 * 1 2 3 33 33 H 1.08000 * 128.02011 * 359.95669 * 3 2 1 34 34 H 0.96996 * 119.99983 * 180.02562 * 5 4 3 35 35 H 1.09005 * 109.47294 * 60.00091 * 8 6 5 36 36 H 1.09001 * 109.47098 * 300.00685 * 8 6 5 37 37 H 1.09007 * 109.47072 * 60.00325 * 9 8 6 38 38 H 1.09001 * 109.47144 * 300.00270 * 9 8 6 39 39 H 1.08996 * 109.47482 * 29.72373 * 13 12 10 40 40 H 1.09000 * 109.47187 * 149.72971 * 13 12 10 41 41 H 0.97002 * 119.99786 * 179.97438 * 17 16 14 42 42 H 1.08004 * 120.03453 * 359.97438 * 23 22 12 43 43 H 1.08000 * 119.96957 * 180.30102 * 24 23 22 44 44 H 1.07999 * 119.93244 * 179.70588 * 25 24 23 45 45 H 1.08001 * 119.96645 * 180.02562 * 26 25 24 46 46 H 1.08001 * 120.03932 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.0844 0.0000 4 6 3.6249 0.5355 0.0006 5 7 4.8286 1.2407 0.0004 6 6 4.8200 2.5884 -0.0011 7 8 3.7658 3.1881 -0.0017 8 6 6.1202 3.3503 -0.0008 9 6 5.8310 4.8527 -0.0020 10 6 7.1313 5.6145 -0.0023 11 8 8.1855 5.0149 -0.0012 12 7 7.1227 6.9623 -0.0028 13 6 5.8541 7.6867 0.1079 14 6 5.2982 7.9397 -1.2699 15 1 5.8359 7.5950 -2.1407 16 6 4.1032 8.6112 -1.4185 17 7 3.4488 9.0314 -0.3579 18 14 3.4139 8.9242 -3.1261 19 1 4.3338 8.3546 -4.1433 20 1 2.0817 8.2796 -3.2480 21 1 3.2779 10.3867 -3.3447 22 6 8.3258 7.6696 -0.1033 23 6 9.0623 7.6262 -1.2798 24 6 10.2463 8.3304 -1.3779 25 6 10.7046 9.0686 -0.3021 26 6 9.9766 9.1090 0.8728 27 6 8.7886 8.4121 0.9752 28 7 3.4764 -0.7632 -0.0044 29 8 2.3082 -1.0752 0.0006 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 2.0305 2.1262 -0.0006 34 1 5.6717 0.7611 0.0005 35 1 6.6942 3.0897 -0.8900 36 1 6.6927 3.0915 0.8899 37 1 5.2572 5.1130 0.8876 38 1 5.2583 5.1118 -0.8925 39 1 5.1445 7.0911 0.6822 40 1 6.0219 8.6383 0.6123 41 1 2.6082 9.5042 -0.4625 42 1 8.7074 7.0459 -2.1187 43 1 10.8172 8.3010 -2.2942 44 1 11.6332 9.6146 -0.3797 45 1 10.3369 9.6868 1.7111 46 1 8.2207 8.4436 1.8933 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066618900.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:05 Heat of formation + Delta-G solvation = 3.146494 kcal Electronic energy + Delta-G solvation = -30781.686872 eV Core-core repulsion = 26446.228777 eV Total energy + Delta-G solvation = -4335.458094 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.94381 -41.64959 -41.07268 -39.35951 -36.80435 -36.74970 -34.70296 -34.60185 -34.10117 -32.92860 -31.81547 -31.01822 -29.01627 -28.68945 -27.20774 -25.07491 -24.70911 -23.51612 -23.25461 -22.21152 -21.65640 -20.20482 -18.79972 -18.77913 -18.72695 -18.37849 -18.06405 -17.62778 -17.24410 -17.15626 -16.94014 -16.37422 -16.19217 -15.49571 -15.31428 -15.22954 -14.68444 -14.48165 -14.38737 -14.29924 -14.16106 -14.05232 -13.93495 -13.63378 -13.47895 -13.32847 -13.12286 -12.88245 -12.85736 -12.65636 -12.49752 -12.26544 -12.24058 -12.16082 -12.07357 -11.71181 -11.23995 -10.92548 -10.61301 -10.42834 -10.13262 -9.96832 -9.82428 -9.24405 -8.23570 -6.37594 0.33028 0.40881 0.51518 0.87911 1.36566 1.37616 1.40229 1.50056 1.62230 1.70178 2.14825 2.21582 2.40200 2.89043 3.07880 3.20836 3.42445 3.72318 3.86276 4.02057 4.03544 4.06674 4.10762 4.12191 4.28533 4.34464 4.52441 4.55654 4.61800 4.68919 4.72411 4.73870 4.78486 4.86385 4.95119 5.03667 5.11316 5.14747 5.15876 5.29436 5.47616 5.56913 5.60571 5.68851 5.79450 6.00104 6.01315 6.16947 6.44233 6.73361 6.81596 7.20876 7.22566 7.35162 8.82733 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.009660 B = 0.002666 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.781797 B =10499.637517 C =12697.423076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.004 4.004 3 C -0.259 4.259 4 C 0.236 3.764 5 N -0.624 5.624 6 C 0.529 3.471 7 O -0.537 6.537 8 C -0.104 4.104 9 C -0.112 4.112 10 C 0.521 3.479 11 O -0.574 6.574 12 N -0.563 5.563 13 C 0.256 3.744 14 C -0.544 4.544 15 H 0.052 0.948 16 C 0.024 3.976 17 N -0.918 5.918 18 Si 0.954 3.046 19 H -0.270 1.270 20 H -0.277 1.277 21 H -0.277 1.277 22 C 0.133 3.867 23 C -0.132 4.132 24 C -0.112 4.112 25 C -0.125 4.125 26 C -0.109 4.109 27 C -0.144 4.144 28 N -0.409 5.409 29 O 0.091 5.909 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.178 0.822 34 H 0.433 0.567 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.036 0.964 40 H 0.019 0.981 41 H 0.268 0.732 42 H 0.104 0.896 43 H 0.149 0.851 44 H 0.160 0.840 45 H 0.154 0.846 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.565 -12.015 1.609 12.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.067 4.067 3 C -0.282 4.282 4 C -0.013 4.013 5 N -0.277 5.277 6 C 0.317 3.683 7 O -0.411 6.411 8 C -0.144 4.144 9 C -0.152 4.152 10 C 0.312 3.688 11 O -0.455 6.455 12 N -0.290 5.290 13 C 0.136 3.864 14 C -0.582 4.582 15 H 0.071 0.929 16 C -0.176 4.176 17 N -0.557 5.557 18 Si 0.779 3.221 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.202 1.202 22 C 0.043 3.957 23 C -0.152 4.152 24 C -0.130 4.130 25 C -0.143 4.143 26 C -0.127 4.127 27 C -0.164 4.164 28 N -0.127 5.127 29 O 0.032 5.968 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.195 0.805 34 H 0.273 0.727 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.054 0.946 40 H 0.037 0.963 41 H 0.077 0.923 42 H 0.122 0.878 43 H 0.166 0.834 44 H 0.177 0.823 45 H 0.172 0.828 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.989 -12.792 1.672 13.243 hybrid contribution -0.697 0.992 -0.783 1.443 sum 2.292 -11.801 0.889 12.054 Atomic orbital electron populations 1.20619 0.80396 1.06267 1.05753 1.25114 0.98003 0.84497 0.99129 1.22795 0.89931 1.02470 1.13005 1.20839 0.89366 0.89128 1.01997 1.42540 1.06392 1.06169 1.72603 1.21171 0.92377 0.80715 0.74030 1.90712 1.34133 1.68482 1.47787 1.21294 0.92966 0.92284 1.07843 1.21241 0.94483 0.93508 1.05968 1.20822 0.91381 0.81813 0.74827 1.90602 1.34024 1.68601 1.52309 1.45872 1.07035 1.05676 1.70386 1.19188 0.78835 0.91600 0.96744 1.21594 1.06283 1.37460 0.92867 0.92925 1.25607 0.96761 0.94873 1.00395 1.70005 1.16507 1.38726 1.30442 0.85562 0.78351 0.78044 0.80113 1.19463 1.20295 1.20210 1.17984 0.87238 0.95970 0.94500 1.21296 0.96945 1.00814 0.96128 1.21327 0.94929 0.96422 1.00361 1.21523 1.00978 0.99247 0.92566 1.21348 0.93471 0.98454 0.99406 1.21395 0.97949 0.99524 0.97488 1.74003 0.98417 1.13029 1.27259 1.84743 1.10304 1.32789 1.68928 0.87572 0.87564 0.87895 0.80465 0.72741 0.86074 0.85653 0.88641 0.88656 0.94639 0.96284 0.92272 0.87821 0.83352 0.82283 0.82803 0.86349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.45 71.23 0.74 -0.03 16 2 C 0.00 -0.08 7.48 24.99 0.19 0.11 16 3 C -0.26 -6.99 9.79 22.52 0.22 -6.77 16 4 C 0.24 6.52 8.18 134.11 1.10 7.62 16 5 N -0.62 -15.10 5.42 -309.54 -1.68 -16.78 16 6 C 0.53 14.97 7.79 87.66 0.68 15.66 16 7 O -0.54 -19.26 13.26 -3.02 -0.04 -19.30 16 8 C -0.10 -2.76 4.99 29.85 0.15 -2.61 16 9 C -0.11 -3.99 3.66 29.85 0.11 -3.88 16 10 C 0.52 21.09 7.52 87.66 0.66 21.75 16 11 O -0.57 -24.01 15.73 -3.04 -0.05 -24.06 16 12 N -0.56 -24.52 2.51 -635.29 -1.59 -26.11 16 13 C 0.26 12.56 4.88 85.64 0.42 12.98 16 14 C -0.54 -28.84 9.18 25.60 0.24 -28.61 16 15 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 16 C 0.02 1.30 5.46 84.66 0.46 1.76 16 17 N -0.92 -51.41 13.29 21.45 0.28 -51.13 16 18 Si 0.95 42.73 29.54 68.60 2.03 44.76 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 21 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 22 C 0.13 5.44 4.76 38.15 0.18 5.62 16 23 C -0.13 -4.96 9.54 22.39 0.21 -4.74 16 24 C -0.11 -3.24 10.04 22.25 0.22 -3.02 16 25 C -0.13 -3.13 10.04 22.29 0.22 -2.91 16 26 C -0.11 -2.98 10.04 22.25 0.22 -2.76 16 27 C -0.14 -5.10 9.68 22.39 0.22 -4.89 16 28 N -0.41 -11.05 12.10 -56.32 -0.68 -11.73 16 29 O 0.09 2.16 11.19 71.20 0.80 2.96 16 30 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.18 5.34 6.22 -2.91 -0.02 5.32 16 34 H 0.43 7.65 8.82 -92.71 -0.82 6.84 16 35 H 0.12 2.89 8.10 -2.38 -0.02 2.87 16 36 H 0.13 2.85 8.10 -2.39 -0.02 2.83 16 37 H 0.10 3.51 7.21 -2.38 -0.02 3.49 16 38 H 0.10 3.82 7.89 -2.39 -0.02 3.80 16 39 H 0.04 1.79 6.46 -2.39 -0.02 1.78 16 40 H 0.02 1.00 7.85 -2.39 -0.02 0.98 16 41 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 42 H 0.10 4.05 8.06 -2.91 -0.02 4.03 16 43 H 0.15 3.31 8.06 -2.91 -0.02 3.28 16 44 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 45 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 46 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -72.01 399.33 5.52 -66.49 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: 0.21 Total: 29.61 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 6.25 Total: 5.29 kcal Atomic # 7 Polarization: -102.08 SS G_CDS: -3.67 Total: -105.75 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: 0.71 Total: -40.40 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -72.01 5.52 -66.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066618900.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.634 kcal (2) G-P(sol) polarization free energy of solvation -72.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds