Wall clock time and date at job start Tue Mar 31 2020 05:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39759 * 125.83742 * 2 1 4 4 C 1.36112 * 107.82969 * 180.14330 * 3 2 1 5 5 N 1.39465 * 126.21535 * 179.91042 * 4 3 2 6 6 C 1.34779 * 120.00530 * 359.68183 * 5 4 3 7 7 O 1.21289 * 119.99586 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00286 * 180.02562 * 6 5 4 9 9 C 1.53004 * 109.46884 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.46786 * 180.02562 * 9 8 6 11 11 O 1.42903 * 109.47006 * 179.97438 * 10 9 8 12 12 C 1.35899 * 116.99930 * 180.02562 * 11 10 9 13 13 C 1.38747 * 120.05586 * 359.97438 * 12 11 10 14 14 C 1.38125 * 119.94590 * 180.02562 * 13 12 11 15 15 C 1.38289 * 120.05159 * 359.97438 * 14 13 12 16 16 C 1.38243 * 120.11362 * 0.02562 * 15 14 13 17 17 C 1.38163 * 120.05438 * 359.97438 * 16 15 14 18 18 C 1.50708 * 120.02715 * 179.97438 * 17 16 15 19 19 N 1.35266 * 107.56433 * 359.64152 * 4 3 2 20 20 C 1.46501 * 126.04360 * 180.22613 * 19 4 3 21 21 C 1.50704 * 109.46799 * 90.00029 * 20 19 4 22 22 H 1.07994 * 120.00252 * 0.02562 * 21 20 19 23 23 C 1.37879 * 119.99669 * 179.97438 * 21 20 19 24 24 N 1.31516 * 120.00129 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00154 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46997 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47595 * 119.99701 * 25 23 21 28 28 H 1.48502 * 109.47196 * 240.00138 * 25 23 21 29 29 N 1.30853 * 125.84253 * 179.74342 * 2 1 3 30 30 H 1.09001 * 109.47148 * 270.23106 * 1 2 3 31 31 H 1.08989 * 109.47532 * 30.23388 * 1 2 3 32 32 H 1.09008 * 109.46964 * 150.23871 * 1 2 3 33 33 H 1.07998 * 126.08779 * 0.03686 * 3 2 1 34 34 H 0.97006 * 119.99967 * 179.69421 * 5 4 3 35 35 H 1.08998 * 109.47303 * 60.00078 * 8 6 5 36 36 H 1.09003 * 109.46742 * 299.99875 * 8 6 5 37 37 H 1.08993 * 109.47093 * 59.99926 * 9 8 6 38 38 H 1.09003 * 109.46925 * 299.99268 * 9 8 6 39 39 H 1.08998 * 109.47474 * 59.99538 * 10 9 8 40 40 H 1.08995 * 109.46823 * 299.99558 * 10 9 8 41 41 H 1.08000 * 120.03046 * 0.02562 * 13 12 11 42 42 H 1.07993 * 119.97844 * 179.72247 * 14 13 12 43 43 H 1.08004 * 119.94567 * 179.97438 * 15 14 13 44 44 H 1.08001 * 119.97538 * 179.97438 * 16 15 14 45 45 H 1.08998 * 109.47128 * 270.02582 * 18 17 16 46 46 H 1.08999 * 109.46873 * 30.02607 * 18 17 16 47 47 H 1.09000 * 109.47139 * 150.02308 * 18 17 16 48 48 H 1.09003 * 109.47014 * 210.00027 * 20 19 4 49 49 H 1.09002 * 109.47033 * 330.00090 * 20 19 4 50 50 H 0.97002 * 120.00236 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6197 0.7122 -0.0032 5 7 4.7511 1.5276 -0.0061 6 6 4.6156 2.8685 -0.0123 7 8 3.5095 3.3662 -0.0149 8 6 5.8382 3.7495 -0.0159 9 6 5.4086 5.2180 -0.0221 10 6 6.6500 6.1124 -0.0265 11 8 6.2488 7.4839 -0.0329 12 6 7.2378 8.4160 -0.0380 13 6 8.5672 8.0187 -0.0363 14 6 9.5705 8.9679 -0.0409 15 6 9.2510 10.3134 -0.0477 16 6 7.9272 10.7118 -0.0494 17 6 6.9199 9.7661 -0.0448 18 6 5.4770 10.2012 -0.0461 19 7 3.6092 -0.6404 0.0029 20 6 4.7871 -1.5115 0.0068 21 6 5.1909 -1.8038 1.4290 22 1 4.6265 -1.3831 2.2479 23 6 6.2805 -2.6091 1.6846 24 7 6.9670 -3.1226 0.6872 25 14 6.7807 -2.9720 3.4473 26 1 5.8526 -2.2804 4.3776 27 1 6.7225 -4.4364 3.6870 28 1 8.1652 -2.4872 3.6788 29 7 2.2732 -1.0607 0.0048 30 1 -0.3633 0.0041 1.0277 31 1 -0.3634 0.8878 -0.5174 32 1 -0.3633 -0.8922 -0.5102 33 1 1.9901 2.1597 0.0006 34 1 5.6358 1.1296 -0.0038 35 1 6.4337 3.5410 -0.9048 36 1 6.4331 3.5490 0.8752 37 1 4.8135 5.4261 0.8669 38 1 4.8136 5.4187 -0.9131 39 1 7.2449 5.9040 -0.9158 40 1 7.2454 5.9118 0.8641 41 1 8.8173 6.9680 -0.0313 42 1 10.6054 8.6593 -0.0350 43 1 10.0369 11.0542 -0.0509 44 1 7.6802 11.7632 -0.0544 45 1 5.1297 10.3111 0.9812 46 1 5.3858 11.1557 -0.5645 47 1 4.8719 9.4516 -0.5560 48 1 4.5500 -2.4454 -0.5029 49 1 5.6084 -1.0143 -0.5093 50 1 7.7338 -3.6889 0.8670 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068219114.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:51 Heat of formation + Delta-G solvation = 11.291441 kcal Electronic energy + Delta-G solvation = -30104.935855 eV Core-core repulsion = 25905.664047 eV Total energy + Delta-G solvation = -4199.271808 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.89464 -40.51950 -39.29441 -37.84061 -34.79460 -34.14002 -33.77748 -32.99877 -32.08758 -30.35434 -29.29213 -28.66033 -27.33307 -26.84029 -26.05287 -23.64747 -22.84158 -22.01085 -21.65257 -20.81880 -19.72060 -19.29546 -18.28585 -17.03276 -16.80626 -16.71939 -16.46566 -16.05624 -15.92538 -15.56817 -14.96979 -14.71009 -14.52189 -14.36747 -14.04819 -13.94498 -13.49360 -13.37931 -13.26245 -12.86050 -12.78899 -12.58129 -12.52173 -12.48426 -12.34590 -12.05234 -11.81199 -11.74246 -11.62514 -11.60402 -11.58772 -11.08765 -11.02807 -10.94193 -10.87491 -10.40375 -10.36696 -9.93649 -9.82073 -9.51973 -9.15001 -8.76209 -8.40653 -7.93479 -7.45548 -6.37080 -4.45493 0.99900 1.13852 2.23139 2.62517 3.01191 3.10727 3.11968 3.21280 3.27412 3.44209 3.59074 3.79079 4.21251 4.40477 4.46619 4.53265 4.60739 4.71901 4.76554 4.87317 4.96332 4.97470 5.04903 5.06488 5.13299 5.29352 5.33737 5.35455 5.37018 5.44691 5.56036 5.64129 5.79267 5.93134 5.96894 6.03170 6.04147 6.14548 6.15020 6.18115 6.22343 6.25793 6.41426 6.49576 6.65360 6.80887 7.01794 7.13715 7.49946 7.55930 7.60793 7.76350 7.88901 8.27933 8.59817 8.68920 9.22286 10.70013 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.010017 B = 0.001929 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.579791 B =14513.387550 C =16779.605899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.295 4.295 4 C 0.300 3.700 5 N -0.640 5.640 6 C 0.520 3.480 7 O -0.514 6.514 8 C -0.133 4.133 9 C -0.103 4.103 10 C 0.059 3.941 11 O -0.309 6.309 12 C 0.132 3.868 13 C -0.206 4.206 14 C -0.087 4.087 15 C -0.158 4.158 16 C -0.085 4.085 17 C -0.119 4.119 18 C -0.106 4.106 19 N -0.345 5.345 20 C 0.256 3.744 21 C -0.539 4.539 22 H 0.065 0.935 23 C 0.066 3.934 24 N -0.890 5.890 25 Si 0.906 3.094 26 H -0.271 1.271 27 H -0.279 1.279 28 H -0.281 1.281 29 N -0.286 5.286 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.161 0.839 34 H 0.417 0.583 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.129 0.871 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.127 0.873 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.072 0.928 48 H 0.057 0.943 49 H 0.044 0.956 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.684 24.242 -3.069 24.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.327 4.327 4 C 0.078 3.922 5 N -0.287 5.287 6 C 0.306 3.694 7 O -0.388 6.388 8 C -0.174 4.174 9 C -0.141 4.141 10 C -0.016 4.016 11 O -0.222 6.222 12 C 0.086 3.914 13 C -0.225 4.225 14 C -0.105 4.105 15 C -0.176 4.176 16 C -0.103 4.103 17 C -0.120 4.120 18 C -0.163 4.163 19 N -0.130 5.130 20 C 0.138 3.862 21 C -0.578 4.578 22 H 0.083 0.917 23 C -0.138 4.138 24 N -0.528 5.528 25 Si 0.733 3.267 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.206 1.206 29 N -0.111 5.111 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.179 0.821 34 H 0.253 0.747 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.145 0.855 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.091 0.909 48 H 0.075 0.925 49 H 0.062 0.938 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.033 23.162 -3.120 23.567 hybrid contribution 1.460 -0.028 0.977 1.757 sum 4.493 23.134 -2.142 23.663 Atomic orbital electron populations 1.20017 0.87591 1.02322 1.02152 1.22039 0.96524 0.91066 1.01848 1.21271 0.89080 1.00433 1.21922 1.17952 0.88092 0.83359 1.02821 1.42819 1.08277 1.05680 1.71959 1.20471 0.91425 0.81309 0.76158 1.90652 1.26910 1.73705 1.47543 1.21482 0.96372 0.93999 1.05499 1.21220 0.96474 0.90720 1.05643 1.22850 0.98155 0.78973 1.01641 1.86057 1.32520 1.15398 1.88272 1.18847 0.87179 0.88945 0.96432 1.21296 0.92008 1.00638 1.08569 1.20946 0.98902 0.92832 0.97798 1.21042 0.96356 0.95979 1.04235 1.20895 0.92072 0.98850 0.98518 1.19319 0.97077 0.89975 1.05601 1.20624 0.91761 1.01526 1.02393 1.49350 1.06529 1.02204 1.54937 1.19625 0.77836 0.89796 0.98916 1.21383 1.13211 1.31832 0.91357 0.91658 1.24944 0.95733 0.94868 0.98215 1.69926 1.19175 1.32575 1.31077 0.86302 0.78319 0.78483 0.83625 1.19557 1.20509 1.20638 1.77353 0.86148 1.21821 1.25775 0.91320 0.91148 0.91561 0.82146 0.74679 0.88058 0.87913 0.89669 0.89723 0.91771 0.91714 0.85327 0.85861 0.86008 0.85506 0.91348 0.91777 0.90931 0.92550 0.93818 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.00 0.38 -0.55 16 2 C 0.05 1.01 7.21 -82.44 -0.59 0.42 16 3 C -0.30 -6.03 9.58 -39.78 -0.38 -6.41 16 4 C 0.30 6.26 7.66 -153.16 -1.17 5.08 16 5 N -0.64 -10.68 5.41 -11.46 -0.06 -10.74 16 6 C 0.52 7.55 7.79 -10.99 -0.09 7.47 16 7 O -0.51 -8.95 13.11 5.55 0.07 -8.88 16 8 C -0.13 -1.24 5.70 -27.88 -0.16 -1.40 16 9 C -0.10 -0.98 4.87 -26.73 -0.13 -1.11 16 10 C 0.06 0.49 4.74 37.16 0.18 0.67 16 11 O -0.31 -3.26 9.18 -19.42 -0.18 -3.43 16 12 C 0.13 1.34 6.66 -39.22 -0.26 1.08 16 13 C -0.21 -1.83 9.04 -39.43 -0.36 -2.19 16 14 C -0.09 -0.69 10.04 -39.60 -0.40 -1.08 16 15 C -0.16 -1.19 10.04 -39.56 -0.40 -1.59 16 16 C -0.09 -0.68 9.70 -39.61 -0.38 -1.06 16 17 C -0.12 -1.12 5.89 -104.47 -0.62 -1.73 16 18 C -0.11 -0.85 9.79 36.01 0.35 -0.50 16 19 N -0.34 -8.03 3.60 -61.57 -0.22 -8.26 16 20 C 0.26 6.32 6.01 -5.19 -0.03 6.29 16 21 C -0.54 -14.33 9.39 -34.44 -0.32 -14.65 16 22 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 23 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 24 N -0.89 -24.01 13.29 55.43 0.74 -23.27 16 25 Si 0.91 20.45 29.54 -169.99 -5.02 15.43 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 29 N -0.29 -6.66 12.56 33.65 0.42 -6.24 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.90 8.14 -51.94 -0.42 0.48 16 32 H 0.07 0.93 8.14 -51.92 -0.42 0.50 16 33 H 0.16 3.19 5.83 -52.49 -0.31 2.88 16 34 H 0.42 6.30 7.97 -40.82 -0.33 5.97 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 38 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 39 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 40 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 41 H 0.13 0.94 6.30 -52.49 -0.33 0.61 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 44 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 47 H 0.07 0.64 7.53 -51.93 -0.39 0.25 16 48 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 49 H 0.04 1.03 7.50 -51.93 -0.39 0.64 16 50 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 420.06 15.07 6.33 6.33 Total: -1.00 -32.68 420.06 -9.98 -42.66 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -7.57 Total: 6.05 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -4.48 Total: -9.65 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.88 Total: -48.51 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.11 Total: -12.31 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -32.68 -9.98 -42.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068219114.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.950 kcal (2) G-P(sol) polarization free energy of solvation -32.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds