Wall clock time and date at job start Tue Mar 31 2020 05:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39759 * 125.83742 * 2 1 4 4 C 1.36112 * 107.82969 * 180.14330 * 3 2 1 5 5 N 1.39465 * 126.21535 * 179.91042 * 4 3 2 6 6 C 1.34779 * 120.00530 * 359.68183 * 5 4 3 7 7 O 1.21289 * 119.99586 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00286 * 180.02562 * 6 5 4 9 9 C 1.53004 * 109.46884 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.46786 * 180.02562 * 9 8 6 11 11 O 1.42903 * 109.47006 * 179.97438 * 10 9 8 12 12 C 1.35899 * 116.99930 * 180.02562 * 11 10 9 13 13 C 1.38747 * 120.05586 * 359.97438 * 12 11 10 14 14 C 1.38125 * 119.94590 * 180.02562 * 13 12 11 15 15 C 1.38289 * 120.05159 * 359.97438 * 14 13 12 16 16 C 1.38243 * 120.11362 * 0.02562 * 15 14 13 17 17 C 1.38163 * 120.05438 * 359.97438 * 16 15 14 18 18 C 1.50708 * 120.02715 * 179.97438 * 17 16 15 19 19 N 1.35266 * 107.56433 * 359.64152 * 4 3 2 20 20 C 1.46501 * 126.04360 * 180.22613 * 19 4 3 21 21 C 1.50704 * 109.46799 * 90.00029 * 20 19 4 22 22 H 1.07994 * 120.00252 * 0.02562 * 21 20 19 23 23 C 1.37879 * 119.99669 * 179.97438 * 21 20 19 24 24 N 1.31516 * 120.00129 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00154 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46997 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47595 * 119.99701 * 25 23 21 28 28 H 1.48502 * 109.47196 * 240.00138 * 25 23 21 29 29 N 1.30853 * 125.84253 * 179.74342 * 2 1 3 30 30 H 1.09001 * 109.47148 * 270.23106 * 1 2 3 31 31 H 1.08989 * 109.47532 * 30.23388 * 1 2 3 32 32 H 1.09008 * 109.46964 * 150.23871 * 1 2 3 33 33 H 1.07998 * 126.08779 * 0.03686 * 3 2 1 34 34 H 0.97006 * 119.99967 * 179.69421 * 5 4 3 35 35 H 1.08998 * 109.47303 * 60.00078 * 8 6 5 36 36 H 1.09003 * 109.46742 * 299.99875 * 8 6 5 37 37 H 1.08993 * 109.47093 * 59.99926 * 9 8 6 38 38 H 1.09003 * 109.46925 * 299.99268 * 9 8 6 39 39 H 1.08998 * 109.47474 * 59.99538 * 10 9 8 40 40 H 1.08995 * 109.46823 * 299.99558 * 10 9 8 41 41 H 1.08000 * 120.03046 * 0.02562 * 13 12 11 42 42 H 1.07993 * 119.97844 * 179.72247 * 14 13 12 43 43 H 1.08004 * 119.94567 * 179.97438 * 15 14 13 44 44 H 1.08001 * 119.97538 * 179.97438 * 16 15 14 45 45 H 1.08998 * 109.47128 * 270.02582 * 18 17 16 46 46 H 1.08999 * 109.46873 * 30.02607 * 18 17 16 47 47 H 1.09000 * 109.47139 * 150.02308 * 18 17 16 48 48 H 1.09003 * 109.47014 * 210.00027 * 20 19 4 49 49 H 1.09002 * 109.47033 * 330.00090 * 20 19 4 50 50 H 0.97002 * 120.00236 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6197 0.7122 -0.0032 5 7 4.7511 1.5276 -0.0061 6 6 4.6156 2.8685 -0.0123 7 8 3.5095 3.3662 -0.0149 8 6 5.8382 3.7495 -0.0159 9 6 5.4086 5.2180 -0.0221 10 6 6.6500 6.1124 -0.0265 11 8 6.2488 7.4839 -0.0329 12 6 7.2378 8.4160 -0.0380 13 6 8.5672 8.0187 -0.0363 14 6 9.5705 8.9679 -0.0409 15 6 9.2510 10.3134 -0.0477 16 6 7.9272 10.7118 -0.0494 17 6 6.9199 9.7661 -0.0448 18 6 5.4770 10.2012 -0.0461 19 7 3.6092 -0.6404 0.0029 20 6 4.7871 -1.5115 0.0068 21 6 5.1909 -1.8038 1.4290 22 1 4.6265 -1.3831 2.2479 23 6 6.2805 -2.6091 1.6846 24 7 6.9670 -3.1226 0.6872 25 14 6.7807 -2.9720 3.4473 26 1 5.8526 -2.2804 4.3776 27 1 6.7225 -4.4364 3.6870 28 1 8.1652 -2.4872 3.6788 29 7 2.2732 -1.0607 0.0048 30 1 -0.3633 0.0041 1.0277 31 1 -0.3634 0.8878 -0.5174 32 1 -0.3633 -0.8922 -0.5102 33 1 1.9901 2.1597 0.0006 34 1 5.6358 1.1296 -0.0038 35 1 6.4337 3.5410 -0.9048 36 1 6.4331 3.5490 0.8752 37 1 4.8135 5.4261 0.8669 38 1 4.8136 5.4187 -0.9131 39 1 7.2449 5.9040 -0.9158 40 1 7.2454 5.9118 0.8641 41 1 8.8173 6.9680 -0.0313 42 1 10.6054 8.6593 -0.0350 43 1 10.0369 11.0542 -0.0509 44 1 7.6802 11.7632 -0.0544 45 1 5.1297 10.3111 0.9812 46 1 5.3858 11.1557 -0.5645 47 1 4.8719 9.4516 -0.5560 48 1 4.5500 -2.4454 -0.5029 49 1 5.6084 -1.0143 -0.5093 50 1 7.7338 -3.6889 0.8670 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068219114.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:50 Heat of formation + Delta-G solvation = -6.339573 kcal Electronic energy + Delta-G solvation = -30105.700393 eV Core-core repulsion = 25905.664047 eV Total energy + Delta-G solvation = -4200.036346 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.42016 -41.18203 -40.60187 -38.49199 -36.27866 -35.60914 -34.94617 -33.83677 -33.61267 -31.06938 -30.76577 -30.06203 -28.27957 -27.81370 -27.51250 -24.88191 -24.30361 -22.74155 -22.55390 -21.73797 -21.20581 -20.67280 -19.00797 -18.87587 -18.32387 -17.79662 -17.48450 -16.88058 -16.70014 -16.64174 -16.48412 -16.02956 -15.80024 -15.33025 -15.25572 -14.88345 -14.57459 -14.44117 -14.19690 -14.07919 -14.03720 -13.98682 -13.58646 -13.39089 -13.28851 -13.14466 -13.09095 -12.96621 -12.87398 -12.72038 -12.46018 -12.32851 -12.29847 -12.19310 -11.91268 -11.68319 -11.63607 -11.54865 -11.45321 -10.91586 -10.77188 -9.74584 -9.63762 -9.06285 -9.04384 -8.37538 -6.54793 0.40019 0.52047 0.80602 1.33513 1.34429 1.38653 1.50090 1.64861 2.06255 2.08860 2.30680 2.42427 2.83944 2.92846 3.45979 3.83162 3.87277 3.90009 3.91954 4.00726 4.12407 4.23815 4.28642 4.37329 4.40393 4.43890 4.53101 4.60734 4.62586 4.70566 4.73854 4.80382 4.82512 4.83505 4.88228 4.91669 4.95940 5.00252 5.03620 5.20794 5.21455 5.25303 5.33340 5.44303 5.50458 5.55581 5.63359 5.76078 5.92596 5.95758 6.17132 6.30155 6.49833 6.56898 6.97583 7.05061 7.17479 8.69036 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.010017 B = 0.001929 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.579791 B =14513.387550 C =16779.605899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.057 3.943 3 C -0.309 4.309 4 C 0.299 3.701 5 N -0.640 5.640 6 C 0.518 3.482 7 O -0.544 6.544 8 C -0.120 4.120 9 C -0.096 4.096 10 C 0.060 3.940 11 O -0.329 6.329 12 C 0.108 3.892 13 C -0.216 4.216 14 C -0.094 4.094 15 C -0.162 4.162 16 C -0.091 4.091 17 C -0.141 4.141 18 C -0.104 4.104 19 N -0.367 5.367 20 C 0.271 3.729 21 C -0.554 4.554 22 H 0.046 0.954 23 C 0.028 3.972 24 N -0.913 5.913 25 Si 0.969 3.031 26 H -0.278 1.278 27 H -0.277 1.277 28 H -0.263 1.263 29 N -0.333 5.333 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.167 0.833 34 H 0.423 0.577 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.057 0.943 48 H 0.026 0.974 49 H 0.051 0.949 50 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.290 25.795 -2.486 26.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.108 4.108 3 C -0.341 4.341 4 C 0.076 3.924 5 N -0.288 5.288 6 C 0.307 3.693 7 O -0.419 6.419 8 C -0.160 4.160 9 C -0.134 4.134 10 C -0.014 4.014 11 O -0.243 6.243 12 C 0.062 3.938 13 C -0.235 4.235 14 C -0.112 4.112 15 C -0.180 4.180 16 C -0.108 4.108 17 C -0.141 4.141 18 C -0.160 4.160 19 N -0.153 5.153 20 C 0.153 3.847 21 C -0.592 4.592 22 H 0.064 0.936 23 C -0.174 4.174 24 N -0.551 5.551 25 Si 0.793 3.207 26 H -0.202 1.202 27 H -0.202 1.202 28 H -0.188 1.188 29 N -0.158 5.158 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.184 0.816 34 H 0.261 0.739 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.160 0.840 42 H 0.162 0.838 43 H 0.162 0.838 44 H 0.165 0.835 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.076 0.924 48 H 0.044 0.956 49 H 0.069 0.931 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.659 24.738 -2.548 25.301 hybrid contribution 0.920 -0.411 0.759 1.261 sum 5.579 24.327 -1.790 25.022 Atomic orbital electron populations 1.20216 0.84006 1.04015 1.03657 1.22890 0.98731 0.90147 0.99078 1.21476 0.89189 1.00734 1.22728 1.18375 0.89789 0.82853 1.01357 1.43070 1.07468 1.06120 1.72154 1.21508 0.92742 0.80640 0.74373 1.90629 1.28736 1.73920 1.48657 1.21538 0.94075 0.92200 1.08180 1.21109 0.96898 0.91239 1.04155 1.22878 0.97467 0.78012 1.03088 1.86016 1.33393 1.16244 1.88682 1.19118 0.87696 0.89225 0.97724 1.21532 0.91713 1.01694 1.08530 1.21287 0.99790 0.92957 0.97196 1.21398 0.96829 0.96531 1.03212 1.21198 0.92068 0.99683 0.97897 1.19626 0.97933 0.90305 1.06263 1.20607 0.91171 1.01839 1.02431 1.49171 1.06275 1.02948 1.56888 1.19244 0.78653 0.89020 0.97809 1.21418 1.13601 1.32626 0.91589 0.93589 1.25671 0.95425 0.94287 1.02022 1.69993 1.19504 1.32729 1.32855 0.85344 0.78474 0.78144 0.78720 1.20238 1.20237 1.18762 1.77297 0.86529 1.23633 1.28331 0.89755 0.88658 0.90649 0.81578 0.73874 0.84921 0.85377 0.91398 0.91112 0.90127 0.90349 0.84030 0.83810 0.83769 0.83503 0.91327 0.90144 0.92391 0.95604 0.93100 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.73 10.44 71.23 0.74 -0.98 16 2 C 0.06 2.30 7.21 43.07 0.31 2.61 16 3 C -0.31 -12.73 9.58 22.14 0.21 -12.52 16 4 C 0.30 12.64 7.66 131.32 1.01 13.65 16 5 N -0.64 -21.17 5.41 -308.56 -1.67 -22.85 16 6 C 0.52 14.66 7.79 87.66 0.68 15.34 16 7 O -0.54 -18.92 13.11 -3.06 -0.04 -18.96 16 8 C -0.12 -1.98 5.70 29.85 0.17 -1.81 16 9 C -0.10 -1.74 4.87 30.60 0.15 -1.59 16 10 C 0.06 0.91 4.74 71.98 0.34 1.25 16 11 O -0.33 -6.84 9.18 -92.41 -0.85 -7.69 16 12 C 0.11 2.12 6.66 22.50 0.15 2.27 16 13 C -0.22 -3.51 9.04 22.36 0.20 -3.31 16 14 C -0.09 -1.30 10.04 22.25 0.22 -1.08 16 15 C -0.16 -2.10 10.04 22.28 0.22 -1.88 16 16 C -0.09 -1.30 9.70 22.25 0.22 -1.08 16 17 C -0.14 -2.56 5.89 -19.77 -0.12 -2.68 16 18 C -0.10 -1.65 9.79 71.24 0.70 -0.95 16 19 N -0.37 -17.62 3.60 -348.70 -1.26 -18.87 16 20 C 0.27 13.85 6.01 85.63 0.51 14.36 16 21 C -0.55 -30.00 9.39 25.60 0.24 -29.76 16 22 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 23 C 0.03 1.45 5.46 84.65 0.46 1.91 16 24 N -0.91 -49.19 13.29 21.45 0.28 -48.91 16 25 Si 0.97 41.58 29.54 68.60 2.03 43.60 16 26 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 27 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 28 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 29 N -0.33 -15.93 12.56 -47.45 -0.60 -16.52 16 30 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.17 6.62 5.83 -2.91 -0.02 6.60 16 34 H 0.42 12.58 7.97 -92.70 -0.74 11.84 16 35 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 38 H 0.07 1.47 8.10 -2.39 -0.02 1.45 16 39 H 0.08 0.95 7.66 -2.39 -0.02 0.93 16 40 H 0.08 0.96 7.66 -2.39 -0.02 0.95 16 41 H 0.14 1.77 6.30 -2.91 -0.02 1.75 16 42 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 43 H 0.14 1.15 8.06 -2.91 -0.02 1.12 16 44 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 45 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 47 H 0.06 1.07 7.53 -2.39 -0.02 1.05 16 48 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.05 2.47 7.50 -2.39 -0.02 2.45 16 50 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -72.68 420.06 4.54 -68.14 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 0.22 Total: 28.31 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 6.43 Total: -6.25 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -3.24 Total: -107.15 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.89 Total: -26.65 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Total: -72.68 4.54 -68.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068219114.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.798 kcal (2) G-P(sol) polarization free energy of solvation -72.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds