Wall clock time and date at job start Tue Mar 31 2020 05:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47064 * 2 1 4 4 C 1.36901 * 120.00189 * 262.58777 * 3 2 1 5 5 H 1.08000 * 119.99381 * 194.91469 * 4 3 2 6 6 C 1.39024 * 119.99845 * 14.91855 * 4 3 2 7 7 N 1.31372 * 120.00237 * 11.86745 * 6 4 3 8 8 Si 1.86804 * 119.99749 * 191.86972 * 6 4 3 9 9 H 1.48504 * 109.47176 * 59.99600 * 8 6 4 10 10 H 1.48492 * 109.47141 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46678 * 300.00046 * 8 6 4 12 12 C 1.34781 * 119.99464 * 82.58435 * 3 2 1 13 13 O 1.21618 * 119.99610 * 184.87271 * 12 3 2 14 14 C 1.47537 * 120.00339 * 4.87359 * 12 3 2 15 15 N 1.32321 * 126.60689 * 4.10783 * 14 12 3 16 16 N 1.28864 * 110.18569 * 179.97438 * 15 14 12 17 17 C 1.40146 * 125.05253 * 179.97438 * 16 15 14 18 18 C 1.38856 * 120.04086 * 218.23598 * 17 16 15 19 19 C 1.38089 * 119.95110 * 179.97438 * 18 17 16 20 20 C 1.38497 * 120.04808 * 359.97438 * 19 18 17 21 21 F 1.35095 * 119.95766 * 179.97438 * 20 19 18 22 22 C 1.38498 * 120.08645 * 0.25736 * 20 19 18 23 23 C 1.38093 * 120.04011 * 359.48616 * 22 20 19 24 24 C 1.35129 * 109.89417 * 0.19350 * 16 15 14 25 25 C 1.35550 * 107.15386 * 359.69465 * 24 16 15 26 26 C 1.50391 * 124.59786 * 179.97438 * 25 24 16 27 27 C 1.53466 * 108.28123 * 344.08547 * 26 25 24 28 28 C 1.53107 * 109.52075 * 49.49606 * 27 26 25 29 29 C 1.50695 * 128.92878 * 180.64917 * 24 16 15 30 30 H 1.09000 * 109.47597 * 59.99595 * 1 2 3 31 31 H 1.08998 * 109.47150 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46842 * 299.99388 * 1 2 3 33 33 H 1.09006 * 109.47040 * 240.00522 * 2 1 3 34 34 H 1.08992 * 109.47423 * 120.00589 * 2 1 3 35 35 H 0.96998 * 119.99996 * 180.02562 * 7 6 4 36 36 H 1.07991 * 120.02648 * 359.95366 * 18 17 16 37 37 H 1.08010 * 119.97813 * 180.02562 * 19 18 17 38 38 H 1.07999 * 119.98042 * 179.72420 * 22 20 19 39 39 H 1.08001 * 120.02306 * 180.27945 * 23 22 20 40 40 H 1.09003 * 109.69776 * 103.78275 * 26 25 24 41 41 H 1.09000 * 109.69600 * 224.34547 * 26 25 24 42 42 H 1.09006 * 109.45926 * 169.51177 * 27 26 25 43 43 H 1.09003 * 109.46936 * 289.47817 * 27 26 25 44 44 H 1.09006 * 109.44077 * 49.99462 * 28 27 26 45 45 H 1.08996 * 109.44970 * 169.89280 * 28 27 26 46 46 H 1.08995 * 109.84980 * 43.00489 * 29 24 16 47 47 H 1.09009 * 109.50850 * 282.48684 * 29 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3907 1.9757 -1.1757 5 1 2.9686 2.8879 -1.1601 6 6 2.0249 1.4050 -2.3895 7 7 1.1356 0.4385 -2.4194 8 14 2.7980 2.0125 -3.9778 9 1 4.2690 1.8177 -3.9185 10 1 2.2435 1.2467 -5.1228 11 1 2.4966 3.4558 -4.1545 12 6 2.1009 2.0667 1.1575 13 8 2.4213 3.2399 1.1479 14 6 1.8026 1.3940 2.4363 15 7 1.5176 0.1130 2.6062 16 7 1.3113 -0.1348 3.8539 17 6 0.9861 -1.3917 4.3817 18 6 0.0706 -1.4936 5.4208 19 6 -0.2487 -2.7330 5.9391 20 6 0.3429 -3.8740 5.4231 21 9 0.0295 -5.0855 5.9320 22 6 1.2599 -3.7740 4.3900 23 6 1.5780 -2.5369 3.8653 24 6 1.4502 0.9983 4.5769 25 6 1.7668 1.9901 3.7089 26 6 2.0098 3.4218 4.0999 27 6 1.4578 3.6344 5.5160 28 6 1.9764 2.5281 6.4387 29 6 1.3173 1.1942 6.0651 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8898 35 1 0.8807 0.0401 -3.2663 36 1 -0.3910 -0.6042 5.8234 37 1 -0.9611 -2.8128 6.7471 38 1 1.7236 -4.6644 3.9919 39 1 2.2897 -2.4596 3.0567 40 1 3.0797 3.6296 4.0875 41 1 1.4985 4.0850 3.4021 42 1 1.7851 4.6039 5.8916 43 1 0.3685 3.6043 5.4896 44 1 3.0576 2.4418 6.3295 45 1 1.7353 2.7751 7.4725 46 1 1.8140 0.3791 6.5915 47 1 0.2618 1.2172 6.3364 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:05 Heat of formation + Delta-G solvation = 45.892991 kcal Electronic energy + Delta-G solvation = -32559.803888 eV Core-core repulsion = 28238.572210 eV Total energy + Delta-G solvation = -4321.231678 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.16741 -42.64464 -39.21826 -38.12898 -36.82334 -34.97300 -33.45943 -31.70956 -31.65560 -30.40584 -29.59734 -29.27534 -28.48305 -25.38825 -23.70037 -23.59480 -23.47251 -22.14324 -21.75177 -21.13861 -18.90801 -18.79376 -17.99399 -17.54410 -16.86029 -16.66656 -15.89482 -15.82595 -15.50934 -14.88388 -14.67036 -14.55034 -14.03891 -13.97214 -13.74746 -13.71896 -13.54444 -13.42672 -13.34397 -12.84044 -12.83618 -12.57203 -12.52170 -12.39058 -11.93771 -11.67998 -11.36908 -11.23338 -11.05051 -10.85237 -10.75196 -10.67328 -10.51030 -10.34894 -10.29433 -10.09506 -9.59806 -9.50696 -9.32282 -8.81276 -8.48551 -8.40329 -8.04462 -7.60950 -6.26941 -3.80103 0.55856 0.85156 2.19070 2.60190 2.62948 3.22552 3.24489 3.25613 3.28698 3.92463 4.10972 4.33329 4.43743 4.45758 4.52239 4.77709 4.81011 4.83560 4.88661 4.97736 5.16833 5.22711 5.31907 5.38249 5.45179 5.50819 5.58125 5.62757 5.70014 5.73417 5.81789 5.84335 5.92468 6.05260 6.08379 6.27752 6.31080 6.39719 6.48748 6.57365 6.65301 6.83568 6.89435 6.94064 7.11984 7.30017 7.44264 7.57943 7.86416 8.13612 8.37525 8.60451 9.19127 9.45833 10.04831 10.66510 Molecular weight = 357.16amu Principal moments of inertia in cm(-1) A = 0.009857 B = 0.003662 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.002530 B = 7644.861764 C =10122.805655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.110 3.890 3 N -0.415 5.415 4 C -0.294 4.294 5 H 0.104 0.896 6 C 0.027 3.973 7 N -0.865 5.865 8 Si 0.931 3.069 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.272 1.272 12 C 0.505 3.495 13 O -0.587 6.587 14 C 0.048 3.952 15 N -0.266 5.266 16 N -0.253 5.253 17 C 0.142 3.858 18 C -0.098 4.098 19 C -0.135 4.135 20 C 0.094 3.906 21 F -0.137 7.137 22 C -0.134 4.134 23 C -0.076 4.076 24 C -0.002 4.002 25 C -0.144 4.144 26 C -0.037 4.037 27 C -0.120 4.120 28 C -0.113 4.113 29 C -0.044 4.044 30 H 0.080 0.920 31 H 0.031 0.969 32 H 0.017 0.983 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.267 0.733 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.074 -6.680 18.215 19.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.014 4.014 3 N -0.131 5.131 4 C -0.423 4.423 5 H 0.121 0.879 6 C -0.177 4.177 7 N -0.505 5.505 8 Si 0.758 3.242 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.198 1.198 12 C 0.292 3.708 13 O -0.472 6.472 14 C -0.113 4.113 15 N -0.097 5.097 16 N -0.033 5.033 17 C 0.051 3.949 18 C -0.118 4.118 19 C -0.154 4.154 20 C 0.074 3.926 21 F -0.116 7.116 22 C -0.153 4.153 23 C -0.096 4.096 24 C -0.123 4.123 25 C -0.154 4.154 26 C -0.075 4.075 27 C -0.158 4.158 28 C -0.151 4.151 29 C -0.082 4.082 30 H 0.099 0.901 31 H 0.050 0.950 32 H 0.036 0.964 33 H 0.120 0.880 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.165 -7.361 17.481 19.091 hybrid contribution 0.118 0.405 -0.451 0.618 sum -2.047 -6.956 17.030 18.509 Atomic orbital electron populations 1.21896 0.96972 0.99096 1.00724 1.21883 0.94502 0.83006 1.01993 1.43735 1.52483 1.11707 1.05201 1.19804 1.30597 1.09789 0.82069 0.87863 1.25358 0.95888 0.96840 0.99577 1.70084 1.28513 1.25224 1.26644 0.85918 0.79285 0.78905 0.80139 1.19886 1.20903 1.19759 1.16630 0.86685 0.85913 0.81565 1.90596 1.55347 1.15279 1.85972 1.22346 1.03668 0.89293 0.96020 1.74461 1.20798 1.18074 0.96317 1.42567 1.50541 1.05386 1.04830 1.17543 0.97933 0.82908 0.96497 1.20913 0.95996 0.98384 0.96484 1.20935 1.01902 0.90515 1.02051 1.17737 0.98436 0.80486 0.95920 1.91511 1.91769 1.42220 1.86101 1.21058 0.98727 0.98801 0.96721 1.20970 0.98975 0.89916 0.99700 1.21134 1.09258 0.86195 0.95735 1.19876 1.07668 0.96729 0.91107 1.19913 1.01503 0.90910 0.95175 1.21679 1.00758 0.98086 0.95274 1.21559 1.00791 0.93612 0.99117 1.20243 1.01322 0.98886 0.87772 0.90108 0.94986 0.96416 0.88020 0.91618 0.92180 0.84024 0.83788 0.83696 0.83511 0.90807 0.89674 0.91454 0.91928 0.91386 0.91266 0.90692 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.30 37.16 0.35 -2.66 16 2 C 0.11 2.66 4.88 -4.04 -0.02 2.64 16 3 N -0.41 -11.15 2.64 -115.99 -0.31 -11.45 16 4 C -0.29 -8.22 9.42 -15.00 -0.14 -8.37 16 5 H 0.10 2.99 7.32 -52.49 -0.38 2.61 16 6 C 0.03 0.69 5.15 -17.46 -0.09 0.60 16 7 N -0.86 -22.38 8.13 55.50 0.45 -21.93 16 8 Si 0.93 20.50 29.57 -169.99 -5.03 15.48 16 9 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 12 C 0.50 13.30 7.56 -12.47 -0.09 13.21 16 13 O -0.59 -16.67 15.50 5.26 0.08 -16.59 16 14 C 0.05 1.07 6.50 -82.98 -0.54 0.53 16 15 N -0.27 -5.35 7.46 33.27 0.25 -5.11 16 16 N -0.25 -4.20 3.45 -6.95 -0.02 -4.22 16 17 C 0.14 1.91 6.24 -83.59 -0.52 1.38 16 18 C -0.10 -1.02 8.83 -39.41 -0.35 -1.36 16 19 C -0.13 -1.21 10.02 -39.54 -0.40 -1.61 16 20 C 0.09 0.94 7.30 -39.39 -0.29 0.65 16 21 F -0.14 -1.42 17.26 2.25 0.04 -1.38 16 22 C -0.13 -1.36 10.02 -39.54 -0.40 -1.75 16 23 C -0.08 -0.93 9.71 -39.40 -0.38 -1.31 16 24 C 0.00 -0.03 6.49 -82.10 -0.53 -0.56 16 25 C -0.14 -2.69 5.99 -104.85 -0.63 -3.32 16 26 C -0.04 -0.60 5.51 -27.79 -0.15 -0.76 16 27 C -0.12 -1.41 5.91 -26.43 -0.16 -1.56 16 28 C -0.11 -1.13 5.89 -26.46 -0.16 -1.28 16 29 C -0.04 -0.47 4.65 -27.67 -0.13 -0.59 16 30 H 0.08 2.08 6.35 -51.93 -0.33 1.75 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.02 0.40 7.34 -51.93 -0.38 0.02 16 33 H 0.10 2.61 5.78 -51.93 -0.30 2.31 16 34 H 0.07 1.51 5.11 -51.93 -0.27 1.24 16 35 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 36 H 0.14 1.27 6.13 -52.49 -0.32 0.95 16 37 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 38 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.15 1.89 8.05 -52.49 -0.42 1.47 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.08 1.56 7.75 -51.93 -0.40 1.16 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 44 H 0.07 0.72 8.12 -51.93 -0.42 0.29 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.70 8.02 -51.93 -0.42 0.29 16 47 H 0.08 0.69 7.19 -51.92 -0.37 0.32 16 LS Contribution 376.94 15.07 5.68 5.68 Total: -1.00 -31.38 376.94 -9.59 -40.98 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.11 Total: 4.67 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -4.63 Total: -6.12 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.37 Total: -42.72 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.08 Total: -16.59 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.38 -9.59 -40.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.870 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds