Wall clock time and date at job start Tue Mar 31 2020 05:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47064 * 2 1 4 4 C 1.36901 * 120.00189 * 262.58777 * 3 2 1 5 5 H 1.08000 * 119.99381 * 194.91469 * 4 3 2 6 6 C 1.39024 * 119.99845 * 14.91855 * 4 3 2 7 7 N 1.31372 * 120.00237 * 11.86745 * 6 4 3 8 8 Si 1.86804 * 119.99749 * 191.86972 * 6 4 3 9 9 H 1.48504 * 109.47176 * 59.99600 * 8 6 4 10 10 H 1.48492 * 109.47141 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46678 * 300.00046 * 8 6 4 12 12 C 1.34781 * 119.99464 * 82.58435 * 3 2 1 13 13 O 1.21618 * 119.99610 * 184.87271 * 12 3 2 14 14 C 1.47537 * 120.00339 * 4.87359 * 12 3 2 15 15 N 1.32321 * 126.60689 * 4.10783 * 14 12 3 16 16 N 1.28864 * 110.18569 * 179.97438 * 15 14 12 17 17 C 1.40146 * 125.05253 * 179.97438 * 16 15 14 18 18 C 1.38856 * 120.04086 * 218.23598 * 17 16 15 19 19 C 1.38089 * 119.95110 * 179.97438 * 18 17 16 20 20 C 1.38497 * 120.04808 * 359.97438 * 19 18 17 21 21 F 1.35095 * 119.95766 * 179.97438 * 20 19 18 22 22 C 1.38498 * 120.08645 * 0.25736 * 20 19 18 23 23 C 1.38093 * 120.04011 * 359.48616 * 22 20 19 24 24 C 1.35129 * 109.89417 * 0.19350 * 16 15 14 25 25 C 1.35550 * 107.15386 * 359.69465 * 24 16 15 26 26 C 1.50391 * 124.59786 * 179.97438 * 25 24 16 27 27 C 1.53466 * 108.28123 * 344.08547 * 26 25 24 28 28 C 1.53107 * 109.52075 * 49.49606 * 27 26 25 29 29 C 1.50695 * 128.92878 * 180.64917 * 24 16 15 30 30 H 1.09000 * 109.47597 * 59.99595 * 1 2 3 31 31 H 1.08998 * 109.47150 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46842 * 299.99388 * 1 2 3 33 33 H 1.09006 * 109.47040 * 240.00522 * 2 1 3 34 34 H 1.08992 * 109.47423 * 120.00589 * 2 1 3 35 35 H 0.96998 * 119.99996 * 180.02562 * 7 6 4 36 36 H 1.07991 * 120.02648 * 359.95366 * 18 17 16 37 37 H 1.08010 * 119.97813 * 180.02562 * 19 18 17 38 38 H 1.07999 * 119.98042 * 179.72420 * 22 20 19 39 39 H 1.08001 * 120.02306 * 180.27945 * 23 22 20 40 40 H 1.09003 * 109.69776 * 103.78275 * 26 25 24 41 41 H 1.09000 * 109.69600 * 224.34547 * 26 25 24 42 42 H 1.09006 * 109.45926 * 169.51177 * 27 26 25 43 43 H 1.09003 * 109.46936 * 289.47817 * 27 26 25 44 44 H 1.09006 * 109.44077 * 49.99462 * 28 27 26 45 45 H 1.08996 * 109.44970 * 169.89280 * 28 27 26 46 46 H 1.08995 * 109.84980 * 43.00489 * 29 24 16 47 47 H 1.09009 * 109.50850 * 282.48684 * 29 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3907 1.9757 -1.1757 5 1 2.9686 2.8879 -1.1601 6 6 2.0249 1.4050 -2.3895 7 7 1.1356 0.4385 -2.4194 8 14 2.7980 2.0125 -3.9778 9 1 4.2690 1.8177 -3.9185 10 1 2.2435 1.2467 -5.1228 11 1 2.4966 3.4558 -4.1545 12 6 2.1009 2.0667 1.1575 13 8 2.4213 3.2399 1.1479 14 6 1.8026 1.3940 2.4363 15 7 1.5176 0.1130 2.6062 16 7 1.3113 -0.1348 3.8539 17 6 0.9861 -1.3917 4.3817 18 6 0.0706 -1.4936 5.4208 19 6 -0.2487 -2.7330 5.9391 20 6 0.3429 -3.8740 5.4231 21 9 0.0295 -5.0855 5.9320 22 6 1.2599 -3.7740 4.3900 23 6 1.5780 -2.5369 3.8653 24 6 1.4502 0.9983 4.5769 25 6 1.7668 1.9901 3.7089 26 6 2.0098 3.4218 4.0999 27 6 1.4578 3.6344 5.5160 28 6 1.9764 2.5281 6.4387 29 6 1.3173 1.1942 6.0651 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8898 35 1 0.8807 0.0401 -3.2663 36 1 -0.3910 -0.6042 5.8234 37 1 -0.9611 -2.8128 6.7471 38 1 1.7236 -4.6644 3.9919 39 1 2.2897 -2.4596 3.0567 40 1 3.0797 3.6296 4.0875 41 1 1.4985 4.0850 3.4021 42 1 1.7851 4.6039 5.8916 43 1 0.3685 3.6043 5.4896 44 1 3.0576 2.4418 6.3295 45 1 1.7353 2.7751 7.4725 46 1 1.8140 0.3791 6.5915 47 1 0.2618 1.2172 6.3364 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:04 Heat of formation + Delta-G solvation = 29.935912 kcal Electronic energy + Delta-G solvation = -32560.495838 eV Core-core repulsion = 28238.572210 eV Total energy + Delta-G solvation = -4321.923628 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.97197 -43.99579 -40.41443 -39.82022 -37.89728 -36.98647 -34.73792 -33.66699 -32.50424 -31.44629 -31.26590 -30.75751 -29.71806 -27.24395 -25.11027 -24.71683 -24.38516 -23.89970 -23.01765 -22.29519 -20.49676 -20.06651 -18.98119 -18.84485 -18.56223 -17.77531 -17.54274 -16.80342 -16.62799 -16.57466 -15.88796 -15.73582 -15.55715 -15.46144 -14.88631 -14.86201 -14.69525 -14.55688 -14.53998 -14.30071 -14.01983 -13.92146 -13.87254 -13.64857 -13.47965 -13.13804 -12.92980 -12.88558 -12.69134 -12.25567 -12.16931 -12.09327 -12.02494 -11.70529 -11.65720 -11.46896 -11.22587 -10.83224 -10.67114 -10.50366 -10.30226 -9.69939 -9.65519 -9.25105 -8.28086 -5.92632 -0.39096 0.05579 0.77718 1.16082 1.39248 1.43509 1.47049 1.52613 2.26096 2.36058 2.51639 3.02066 3.11599 3.18991 3.42739 3.51858 3.69538 3.71928 3.89236 4.03944 4.05780 4.12148 4.19840 4.32867 4.41811 4.49070 4.61612 4.63973 4.67748 4.74995 4.82012 4.89398 4.93643 4.96298 4.96649 5.01070 5.05040 5.10806 5.12739 5.21563 5.27634 5.35087 5.36779 5.49029 5.50380 5.55734 5.64199 5.83230 6.03634 6.15753 6.50643 6.95648 7.13937 7.43440 8.01634 8.64162 Molecular weight = 357.16amu Principal moments of inertia in cm(-1) A = 0.009857 B = 0.003662 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.002530 B = 7644.861764 C =10122.805655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.120 3.880 3 N -0.431 5.431 4 C -0.343 4.343 5 H 0.077 0.923 6 C -0.002 4.002 7 N -0.873 5.873 8 Si 0.997 3.003 9 H -0.270 1.270 10 H -0.266 1.266 11 H -0.276 1.276 12 C 0.494 3.506 13 O -0.625 6.625 14 C 0.002 3.998 15 N -0.279 5.279 16 N -0.242 5.242 17 C 0.103 3.897 18 C -0.084 4.084 19 C -0.120 4.120 20 C 0.098 3.902 21 F -0.136 7.136 22 C -0.131 4.131 23 C -0.087 4.087 24 C 0.023 3.977 25 C -0.174 4.174 26 C -0.037 4.037 27 C -0.112 4.112 28 C -0.108 4.108 29 C -0.043 4.043 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.009 0.991 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.274 0.726 36 H 0.164 0.836 37 H 0.180 0.820 38 H 0.162 0.838 39 H 0.130 0.870 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.110 0.890 46 H 0.099 0.901 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.544 -8.806 21.700 23.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.003 4.003 3 N -0.147 5.147 4 C -0.471 4.471 5 H 0.095 0.905 6 C -0.204 4.204 7 N -0.512 5.512 8 Si 0.820 3.180 9 H -0.195 1.195 10 H -0.190 1.190 11 H -0.201 1.201 12 C 0.283 3.717 13 O -0.513 6.513 14 C -0.156 4.156 15 N -0.112 5.112 16 N -0.022 5.022 17 C 0.014 3.986 18 C -0.104 4.104 19 C -0.139 4.139 20 C 0.079 3.921 21 F -0.115 7.115 22 C -0.150 4.150 23 C -0.106 4.106 24 C -0.101 4.101 25 C -0.184 4.184 26 C -0.075 4.075 27 C -0.149 4.149 28 C -0.146 4.146 29 C -0.081 4.081 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.028 0.972 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.181 0.819 37 H 0.197 0.803 38 H 0.180 0.820 39 H 0.148 0.852 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.104 0.896 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.128 0.872 46 H 0.118 0.882 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.652 -9.536 20.962 23.317 hybrid contribution 0.508 0.867 -1.379 1.706 sum -3.143 -8.669 19.583 21.646 Atomic orbital electron populations 1.21676 0.96272 0.99884 0.98926 1.21819 0.94888 0.81945 1.01684 1.43931 1.53040 1.12508 1.05213 1.19774 1.33084 1.10485 0.83745 0.90456 1.26122 0.95726 0.96689 1.01860 1.70166 1.28146 1.25137 1.27739 0.84955 0.78521 0.78209 0.76341 1.19461 1.19020 1.20100 1.17270 0.85609 0.85839 0.82948 1.90525 1.56716 1.16982 1.87039 1.21864 1.07460 0.90815 0.95509 1.74202 1.21114 1.17061 0.98782 1.42838 1.48516 1.06998 1.03842 1.17968 1.00547 0.81561 0.98534 1.21119 0.94562 0.99853 0.94840 1.21272 1.01374 0.89186 1.02029 1.17892 0.97892 0.80906 0.95435 1.91527 1.91655 1.42311 1.85969 1.21182 0.98706 0.98475 0.96661 1.20920 0.99278 0.90710 0.99732 1.21858 1.05870 0.84524 0.97812 1.20194 1.09282 0.98538 0.90384 1.19902 1.00506 0.89302 0.97813 1.21650 1.00888 1.00135 0.92241 1.21591 1.00185 0.92247 1.00596 1.20576 1.03722 1.00121 0.83709 0.92631 0.92717 0.97194 0.89627 0.90412 0.91523 0.81902 0.80257 0.81996 0.85178 0.92220 0.93288 0.89571 0.91345 0.92189 0.87172 0.88234 0.87352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.30 9.30 71.98 0.67 -4.63 16 2 C 0.12 6.12 4.88 86.38 0.42 6.54 16 3 N -0.43 -24.88 2.64 -639.12 -1.69 -26.56 16 4 C -0.34 -20.59 9.42 84.09 0.79 -19.80 16 5 H 0.08 4.90 7.32 -2.91 -0.02 4.88 16 6 C 0.00 -0.08 5.15 84.95 0.44 0.35 16 7 N -0.87 -46.51 8.13 21.68 0.18 -46.34 16 8 Si 1.00 43.31 29.57 68.60 2.03 45.34 16 9 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 10 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 12 C 0.49 28.31 7.56 86.70 0.66 28.97 16 13 O -0.63 -38.95 15.50 -4.09 -0.06 -39.02 16 14 C 0.00 0.11 6.50 42.10 0.27 0.38 16 15 N -0.28 -11.62 7.46 -48.64 -0.36 -11.99 16 16 N -0.24 -7.84 3.45 -175.90 -0.61 -8.45 16 17 C 0.10 2.55 6.24 38.11 0.24 2.79 16 18 C -0.08 -1.38 8.83 22.38 0.20 -1.18 16 19 C -0.12 -1.54 10.02 22.30 0.22 -1.32 16 20 C 0.10 1.58 7.30 22.39 0.16 1.74 16 21 F -0.14 -2.27 17.26 44.97 0.78 -1.50 16 22 C -0.13 -2.33 10.02 22.30 0.22 -2.11 16 23 C -0.09 -2.03 9.71 22.39 0.22 -1.81 16 24 C 0.02 0.68 6.49 41.43 0.27 0.95 16 25 C -0.17 -6.75 5.99 -20.01 -0.12 -6.87 16 26 C -0.04 -1.27 5.51 29.91 0.16 -1.11 16 27 C -0.11 -2.42 5.91 30.79 0.18 -2.24 16 28 C -0.11 -1.74 5.89 30.77 0.18 -1.56 16 29 C -0.04 -0.73 4.65 29.98 0.14 -0.59 16 30 H 0.05 2.96 6.35 -2.39 -0.02 2.95 16 31 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.01 0.45 7.34 -2.39 -0.02 0.43 16 33 H 0.09 4.61 5.78 -2.38 -0.01 4.60 16 34 H 0.08 3.77 5.11 -2.39 -0.01 3.76 16 35 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 36 H 0.16 1.99 6.13 -2.92 -0.02 1.98 16 37 H 0.18 1.12 8.06 -2.91 -0.02 1.10 16 38 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 39 H 0.13 3.43 8.05 -2.91 -0.02 3.41 16 40 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.05 1.99 7.75 -2.39 -0.02 1.97 16 42 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 43 H 0.07 1.41 8.12 -2.39 -0.02 1.40 16 44 H 0.06 1.09 8.12 -2.38 -0.02 1.07 16 45 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.10 1.31 8.02 -2.39 -0.02 1.29 16 47 H 0.11 1.27 7.19 -2.38 -0.02 1.26 16 Total: -1.00 -76.73 376.94 6.60 -70.13 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 1.01 Total: 19.86 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 5.33 Total: -1.49 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -2.48 Total: -93.33 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -0.06 Total: -39.02 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.78 Total: -1.50 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -76.73 6.60 -70.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.066 kcal (2) G-P(sol) polarization free energy of solvation -76.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds