Wall clock time and date at job start Tue Mar 31 2020 05:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46991 * 2 1 4 4 C 1.50700 * 109.46804 * 119.99736 * 2 1 3 5 5 N 1.29942 * 126.29237 * 299.97424 * 4 2 1 6 6 O 1.21297 * 110.25536 * 180.02562 * 5 4 2 7 7 C 1.33646 * 109.80757 * 359.97438 * 6 5 4 8 8 C 1.50701 * 126.55028 * 179.97438 * 7 6 5 9 9 C 1.53008 * 109.47203 * 270.02617 * 8 7 6 10 10 C 1.52994 * 109.47064 * 180.02562 * 9 8 7 11 11 C 1.50707 * 109.46774 * 180.02562 * 10 9 8 12 12 O 1.21283 * 120.00097 * 354.45796 * 11 10 9 13 13 N 1.34775 * 119.99667 * 174.45902 * 11 10 9 14 14 C 1.46506 * 120.00030 * 184.45100 * 13 11 10 15 15 C 1.50707 * 109.47103 * 270.00389 * 14 13 11 16 16 H 1.07998 * 119.99957 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99566 * 179.97438 * 15 14 13 18 18 N 1.31505 * 120.00165 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99610 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47478 * 90.00050 * 19 17 15 21 21 H 1.48497 * 109.46998 * 210.00158 * 19 17 15 22 22 H 1.48508 * 109.46959 * 329.99740 * 19 17 15 23 23 C 1.39923 * 120.00153 * 4.45919 * 13 11 10 24 24 C 1.38872 * 120.07336 * 66.79372 * 23 13 11 25 25 C 1.38113 * 119.92646 * 179.97438 * 24 23 13 26 26 C 1.38284 * 120.07236 * 359.97313 * 25 24 23 27 27 C 1.38277 * 120.14310 * 0.04475 * 26 25 24 28 28 C 1.38117 * 120.06854 * 359.96101 * 27 26 25 29 29 N 1.31125 * 106.89964 * 0.23231 * 7 6 5 30 30 H 1.08998 * 109.47254 * 59.99637 * 1 2 3 31 31 H 1.08995 * 109.47434 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47098 * 300.00351 * 1 2 3 33 33 H 1.08992 * 109.47091 * 239.99947 * 2 1 3 34 34 H 1.09003 * 109.46561 * 180.02562 * 3 2 1 35 35 H 1.08991 * 109.47103 * 300.00031 * 3 2 1 36 36 H 1.09001 * 109.47117 * 60.00218 * 3 2 1 37 37 H 1.08998 * 109.47163 * 150.02679 * 8 7 6 38 38 H 1.08998 * 109.47149 * 30.02246 * 8 7 6 39 39 H 1.09004 * 109.46888 * 59.99545 * 9 8 7 40 40 H 1.09001 * 109.46698 * 300.00390 * 9 8 7 41 41 H 1.08998 * 109.47255 * 60.00090 * 10 9 8 42 42 H 1.08998 * 109.47196 * 299.99573 * 10 9 8 43 43 H 1.09001 * 109.46670 * 30.00181 * 14 13 11 44 44 H 1.08996 * 109.47328 * 150.00546 * 14 13 11 45 45 H 0.97008 * 120.00038 * 179.97438 * 18 17 15 46 46 H 1.07996 * 120.03472 * 359.70196 * 24 23 13 47 47 H 1.07998 * 119.96255 * 179.97438 * 25 24 23 48 48 H 1.08010 * 119.92736 * 180.02562 * 26 25 24 49 49 H 1.07999 * 119.96673 * 179.97438 * 27 26 25 50 50 H 1.07999 * 120.03237 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7953 -0.3744 2.4632 6 8 2.3421 -1.1471 3.2216 7 6 2.9994 -2.0781 2.5235 8 6 3.8068 -3.2189 3.0871 9 6 5.2578 -2.7720 3.2768 10 6 6.0777 -3.9304 3.8483 11 6 7.5067 -3.4899 4.0358 12 8 7.8598 -2.3961 3.6488 13 7 8.3922 -4.3117 4.6333 14 6 9.7553 -3.8477 4.9036 15 6 10.6376 -4.1665 3.7241 16 1 10.2242 -4.6645 2.8595 17 6 11.9723 -3.8214 3.7485 18 7 12.4752 -3.2137 4.8006 19 14 13.0657 -4.2160 2.2862 20 1 13.0448 -3.0789 1.3313 21 1 14.4563 -4.4432 2.7551 22 1 12.5652 -5.4397 1.6098 23 6 8.0097 -5.6080 4.9955 24 6 7.7082 -6.5441 4.0150 25 6 7.3315 -7.8229 4.3759 26 6 7.2551 -8.1717 5.7119 27 6 7.5543 -7.2419 6.6906 28 6 7.9315 -5.9613 6.3363 29 7 2.8121 -1.8059 1.2545 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9564 0.8900 37 1 3.7738 -4.0627 2.3979 38 1 3.3903 -3.5186 4.0487 39 1 5.2909 -1.9281 3.9659 40 1 5.6743 -2.4722 2.3151 41 1 6.0445 -4.7739 3.1588 42 1 5.6613 -4.2305 4.8099 43 1 9.7461 -2.7704 5.0698 44 1 10.1405 -4.3491 5.7914 45 1 13.4144 -2.9712 4.8179 46 1 7.7639 -6.2711 2.9716 47 1 7.0965 -8.5512 3.6139 48 1 6.9606 -9.1726 5.9914 49 1 7.4933 -7.5173 7.7331 50 1 8.1647 -5.2354 7.1011 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069351898.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:12 Heat of formation + Delta-G solvation = 41.179209 kcal Electronic energy + Delta-G solvation = -30889.293668 eV Core-core repulsion = 26691.317891 eV Total energy + Delta-G solvation = -4197.975777 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.71257 -39.97840 -38.22370 -37.09003 -35.91506 -34.88384 -34.12368 -32.72466 -31.75616 -30.72235 -29.43783 -28.66716 -27.58522 -26.83756 -24.78814 -24.06416 -23.01821 -22.59212 -22.16986 -21.47743 -20.23332 -19.00871 -18.15232 -17.75307 -17.03967 -16.57174 -16.06838 -15.79681 -15.44660 -15.32855 -15.17711 -14.78461 -14.46245 -14.24864 -14.09395 -13.79205 -13.60950 -13.24269 -13.18134 -12.86895 -12.63154 -12.52676 -12.44995 -12.26175 -12.02586 -11.92418 -11.85784 -11.63464 -11.48805 -11.44910 -11.29820 -11.20621 -11.07737 -11.03640 -10.85490 -10.77825 -10.65378 -10.19325 -9.99354 -9.75958 -9.33993 -8.72065 -8.60777 -8.45815 -7.69471 -6.07854 -4.12114 1.01130 1.53566 1.61372 2.08210 2.66319 3.24363 3.30093 3.35961 3.36411 3.39001 3.73149 3.86539 4.00461 4.42424 4.49445 4.65487 4.66300 4.68859 4.80088 4.93101 5.13289 5.14589 5.15967 5.22537 5.24693 5.28234 5.31277 5.36668 5.40283 5.41358 5.44386 5.50731 5.62942 5.65886 5.70447 5.77567 5.79014 5.81925 5.94426 6.03838 6.05789 6.22762 6.24505 6.57561 6.70187 6.77081 6.94579 7.16646 7.32548 7.44997 7.87406 8.04186 8.16230 8.30639 8.81863 8.95985 9.52401 11.00545 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.009484 B = 0.002335 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.656193 B =11986.593398 C =13967.268188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.004 4.004 3 C -0.146 4.146 4 C 0.174 3.826 5 N -0.384 5.384 6 O 0.076 5.924 7 C 0.191 3.809 8 C -0.028 4.028 9 C -0.101 4.101 10 C -0.139 4.139 11 C 0.512 3.488 12 O -0.526 6.526 13 N -0.563 5.563 14 C 0.248 3.752 15 C -0.524 4.524 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.166 3.834 24 C -0.125 4.125 25 C -0.110 4.110 26 C -0.135 4.135 27 C -0.109 4.109 28 C -0.126 4.126 29 N -0.482 5.482 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.046 0.954 44 H 0.035 0.965 45 H 0.264 0.736 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.118 0.882 49 H 0.121 0.879 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.501 -3.584 -2.456 22.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 C -0.204 4.204 4 C -0.099 4.099 5 N -0.092 5.092 6 O 0.018 5.982 7 C -0.029 4.029 8 C -0.067 4.067 9 C -0.140 4.140 10 C -0.179 4.179 11 C 0.300 3.700 12 O -0.401 6.401 13 N -0.291 5.291 14 C 0.130 3.870 15 C -0.563 4.563 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.534 5.534 19 Si 0.726 3.274 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.199 1.199 23 C 0.074 3.926 24 C -0.145 4.145 25 C -0.128 4.128 26 C -0.154 4.154 27 C -0.128 4.128 28 C -0.146 4.146 29 N -0.215 5.215 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.130 0.870 38 H 0.122 0.878 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.073 0.927 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.139 0.861 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.547 -2.216 -2.808 22.829 hybrid contribution 1.032 -0.444 -0.624 1.285 sum -21.515 -2.660 -3.432 21.949 Atomic orbital electron populations 1.21843 0.92947 1.02479 1.02939 1.19559 0.96309 0.95489 0.91077 1.21857 1.01760 0.93888 1.02910 1.25826 0.96568 0.92903 0.94594 1.74557 1.17888 1.13896 1.02861 1.85298 1.47843 1.29773 1.35313 1.28847 0.94176 0.93939 0.85932 1.20362 0.93246 0.90548 1.02594 1.21339 0.90547 0.98457 1.03695 1.21682 0.93479 0.99492 1.03233 1.20340 0.86849 0.85028 0.77830 1.90704 1.79918 1.21730 1.47782 1.46004 1.14340 1.10323 1.58420 1.19424 0.74111 0.96547 0.96870 1.21346 0.93779 1.38849 1.02289 0.92412 1.24910 0.97886 0.94946 0.96285 1.69922 1.14156 1.40508 1.28772 0.86490 0.79575 0.78774 0.82570 1.20500 1.21101 1.19881 1.17730 0.96679 0.85924 0.92298 1.21358 1.00800 0.92990 0.99332 1.20969 0.99936 0.95752 0.96170 1.21057 1.01989 0.99271 0.93063 1.20967 0.99517 0.93027 0.99261 1.21315 1.00617 0.97169 0.95451 1.71925 1.17040 1.14391 1.18178 0.91066 0.92348 0.91892 0.88038 0.92079 0.91056 0.91864 0.87018 0.87795 0.90421 0.89936 0.88711 0.89040 0.93575 0.94716 0.92665 0.85936 0.86163 0.86439 0.86142 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.18 37.16 0.34 -0.73 16 2 C 0.00 -0.04 3.39 -91.77 -0.31 -0.35 16 3 C -0.15 -1.22 9.18 37.16 0.34 -0.88 16 4 C 0.17 2.15 6.72 -156.37 -1.05 1.10 16 5 N -0.38 -5.06 12.16 30.90 0.38 -4.69 16 6 O 0.08 0.95 11.31 18.09 0.20 1.15 16 7 C 0.19 2.22 7.77 -13.06 -0.10 2.12 16 8 C -0.03 -0.25 5.84 -27.88 -0.16 -0.41 16 9 C -0.10 -1.23 4.50 -26.73 -0.12 -1.35 16 10 C -0.14 -1.80 4.37 -27.88 -0.12 -1.92 16 11 C 0.51 10.00 7.53 -10.98 -0.08 9.92 16 12 O -0.53 -12.59 15.61 5.55 0.09 -12.51 16 13 N -0.56 -11.61 2.51 -114.73 -0.29 -11.90 16 14 C 0.25 6.39 5.07 -5.19 -0.03 6.36 16 15 C -0.52 -14.76 9.39 -34.44 -0.32 -15.09 16 16 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -26.46 13.28 55.43 0.74 -25.72 16 19 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.17 2.83 4.42 -83.69 -0.37 2.46 16 24 C -0.13 -1.87 8.46 -39.39 -0.33 -2.20 16 25 C -0.11 -1.33 10.04 -39.61 -0.40 -1.73 16 26 C -0.14 -1.54 10.04 -39.55 -0.40 -1.94 16 27 C -0.11 -1.34 10.04 -39.61 -0.40 -1.73 16 28 C -0.13 -1.89 9.64 -39.39 -0.38 -2.27 16 29 N -0.48 -6.31 11.55 -9.87 -0.11 -6.43 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 41 H 0.09 1.08 6.99 -51.93 -0.36 0.71 16 42 H 0.09 0.99 8.02 -51.93 -0.42 0.58 16 43 H 0.05 1.32 7.49 -51.93 -0.39 0.94 16 44 H 0.03 0.91 7.83 -51.93 -0.41 0.51 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.12 1.83 7.90 -52.49 -0.41 1.42 16 47 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 48 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 49 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 50 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 424.35 15.07 6.39 6.39 Total: -1.00 -34.55 424.35 -9.49 -44.04 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -7.87 Total: -0.29 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -3.99 Total: -6.97 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.71 Total: -48.73 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.29 Total: -11.35 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -34.55 -9.49 -44.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069351898.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.217 kcal (2) G-P(sol) polarization free energy of solvation -34.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds