Wall clock time and date at job start Tue Mar 31 2020 05:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47022 * 2 1 4 4 N 1.46501 * 109.46913 * 180.02562 * 3 2 1 5 5 C 1.36904 * 120.00114 * 266.77984 * 4 3 2 6 6 H 1.07993 * 120.00007 * 142.34572 * 5 4 3 7 7 C 1.39020 * 119.99646 * 322.34528 * 5 4 3 8 8 N 1.31379 * 119.99754 * 161.50124 * 7 5 4 9 9 Si 1.86799 * 120.00206 * 341.49886 * 7 5 4 10 10 H 1.48505 * 109.46936 * 94.95444 * 9 7 5 11 11 H 1.48503 * 109.47217 * 214.95307 * 9 7 5 12 12 H 1.48502 * 109.47173 * 334.95617 * 9 7 5 13 13 C 1.34781 * 120.00277 * 86.78219 * 4 3 2 14 14 O 1.21618 * 119.99738 * 4.76207 * 13 4 3 15 15 C 1.47518 * 120.00199 * 184.76987 * 13 4 3 16 16 C 1.39918 * 120.02473 * 142.79941 * 15 13 4 17 17 C 1.37624 * 120.14475 * 180.02562 * 16 15 13 18 18 C 1.38991 * 120.05116 * 359.97438 * 17 16 15 19 19 C 1.39884 * 120.09276 * 0.02562 * 18 17 16 20 20 C 1.38230 * 120.03854 * 0.02562 * 19 18 17 21 21 N 1.39385 * 106.74058 * 179.97438 * 19 18 17 22 22 H 0.97001 * 125.86090 * 180.02562 * 21 19 18 23 23 C 1.34633 * 108.25968 * 359.77062 * 21 19 18 24 24 O 1.21683 * 125.13771 * 180.23215 * 23 21 19 25 25 N 1.34598 * 109.71963 * 0.37780 * 23 21 19 26 26 C 1.46500 * 125.75915 * 179.88255 * 25 23 21 27 27 C 1.54262 * 110.48461 * 299.69857 * 26 25 23 28 28 C 1.53881 * 106.59826 * 142.28883 * 27 26 25 29 29 C 1.54263 * 106.63892 * 359.96931 * 28 27 26 30 30 C 1.54892 * 110.48052 * 54.47147 * 26 25 23 31 31 H 1.08996 * 109.47369 * 60.00228 * 1 2 3 32 32 H 1.09005 * 109.46943 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46944 * 299.99996 * 1 2 3 34 34 H 1.09008 * 109.47251 * 239.99823 * 2 1 3 35 35 H 1.08999 * 109.47164 * 120.00515 * 2 1 3 36 36 H 1.08996 * 109.47257 * 60.00196 * 3 2 1 37 37 H 1.08997 * 109.47369 * 299.99510 * 3 2 1 38 38 H 0.97003 * 119.99924 * 180.02562 * 8 7 5 39 39 H 1.08000 * 119.93121 * 0.02562 * 16 15 13 40 40 H 1.07998 * 119.97637 * 179.97438 * 17 16 15 41 41 H 1.08005 * 120.14073 * 179.97438 * 20 19 18 42 42 H 1.08991 * 110.53985 * 177.07943 * 26 25 23 43 43 H 1.08993 * 110.03845 * 23.00108 * 27 26 25 44 44 H 1.09001 * 110.03177 * 261.56478 * 27 26 25 45 45 H 1.08996 * 110.03639 * 119.27881 * 28 27 26 46 46 H 1.09005 * 110.03227 * 240.66453 * 28 27 26 47 47 H 1.09002 * 110.48871 * 95.09642 * 29 28 27 48 48 H 1.09005 * 110.48868 * 217.73914 * 29 28 27 49 49 H 1.09000 * 110.76052 * 321.68972 * 30 26 25 50 50 H 1.08997 * 110.76038 * 85.06751 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1900 1.5088 1.1828 6 1 5.1013 0.9438 1.3117 7 6 3.7125 2.3036 2.2187 8 7 4.1333 2.1043 3.4472 9 14 2.4726 3.6550 1.8638 10 1 1.0993 3.1407 2.0980 11 1 2.7286 4.8099 2.7616 12 1 2.6043 4.0887 0.4496 13 6 4.1784 1.3771 -1.1663 14 8 3.5731 1.4055 -2.2207 15 6 5.6498 1.2709 -1.1631 16 6 6.2964 0.4761 -2.1160 17 6 7.6689 0.3748 -2.1150 18 6 8.4169 1.0628 -1.1669 19 6 7.7767 1.8592 -0.2115 20 6 6.3983 1.9627 -0.2084 21 7 8.7772 2.4106 0.5871 22 1 8.6396 3.0089 1.3381 23 6 9.9667 1.9656 0.1404 24 8 11.0473 2.2540 0.6198 25 7 9.7802 1.1560 -0.9186 26 6 10.8366 0.4818 -1.6774 27 6 11.7980 1.5154 -2.2995 28 6 13.2113 0.9140 -2.2046 29 6 13.0604 -0.4639 -1.5276 30 6 11.7357 -0.3520 -0.7311 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 3.7999 2.6586 4.1700 39 1 5.7172 -0.0591 -2.8539 40 1 8.1651 -0.2398 -2.8515 41 1 5.9023 2.5768 0.5288 42 1 10.4057 -0.1528 -2.4516 43 1 11.7522 2.4509 -1.7421 44 1 11.5354 1.6889 -3.3431 45 1 13.6344 0.7956 -3.2021 46 1 13.8515 1.5581 -1.6018 47 1 12.9890 -1.2517 -2.2775 48 1 13.8967 -0.6517 -0.8541 49 1 11.8955 0.1719 0.2112 50 1 11.3046 -1.3380 -0.5579 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069415894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:22 Heat of formation + Delta-G solvation = -7.898571 kcal Electronic energy + Delta-G solvation = -32592.337731 eV Core-core repulsion = 28392.233782 eV Total energy + Delta-G solvation = -4200.103950 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.31674 -39.41037 -38.24675 -37.49679 -35.67835 -35.13844 -34.01266 -33.12262 -31.80236 -30.12903 -28.90118 -28.87829 -27.91099 -26.06020 -25.09058 -22.97961 -22.65960 -22.02998 -21.26335 -20.67517 -19.71676 -19.39802 -18.07640 -17.90707 -16.64806 -16.32596 -16.16898 -15.92888 -15.64463 -15.43959 -15.00417 -14.39233 -14.22988 -14.04419 -13.99164 -13.66089 -13.63513 -13.54268 -13.21954 -12.82040 -12.65885 -12.40945 -12.35087 -12.17294 -11.98344 -11.70890 -11.57133 -11.40903 -11.30055 -11.20585 -11.05869 -10.96491 -10.91352 -10.70765 -10.54153 -10.46935 -10.16469 -10.12642 -9.96622 -9.82412 -9.34621 -8.77406 -8.09060 -7.89867 -7.52681 -6.61103 -4.21410 1.40144 1.64694 2.42584 2.95249 3.08366 3.12764 3.19559 3.45642 3.59622 3.98544 4.12926 4.32698 4.36627 4.41791 4.60196 4.82624 4.83333 4.95668 5.11515 5.27795 5.28842 5.33117 5.46744 5.48100 5.53299 5.54698 5.60007 5.66980 5.72874 5.74357 5.80946 5.84044 5.87996 5.96407 6.02776 6.07568 6.17364 6.19558 6.25969 6.29478 6.36944 6.41946 6.58106 6.66953 6.74017 6.82171 6.91119 7.03266 7.13734 7.22797 7.52518 7.91690 8.10569 8.42410 8.77556 9.18617 9.52030 10.46963 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.016291 B = 0.002864 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.380083 B = 9774.646747 C =10793.337399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.101 3.899 4 N -0.454 5.454 5 C -0.350 4.350 6 H 0.113 0.887 7 C 0.067 3.933 8 N -0.854 5.854 9 Si 0.876 3.124 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.259 1.259 13 C 0.521 3.479 14 O -0.591 6.591 15 C -0.091 4.091 16 C -0.064 4.064 17 C -0.127 4.127 18 C 0.096 3.904 19 C 0.070 3.930 20 C -0.043 4.043 21 N -0.639 5.639 22 H 0.435 0.565 23 C 0.682 3.318 24 O -0.565 6.565 25 N -0.531 5.531 26 C 0.158 3.842 27 C -0.135 4.135 28 C -0.118 4.118 29 C -0.119 4.119 30 C -0.140 4.140 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.277 0.723 39 H 0.134 0.866 40 H 0.126 0.874 41 H 0.167 0.833 42 H 0.104 0.896 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.089 0.911 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.323 -3.753 -8.236 12.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C -0.022 4.022 4 N -0.173 5.173 5 C -0.477 4.477 6 H 0.130 0.870 7 C -0.142 4.142 8 N -0.489 5.489 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.183 1.183 13 C 0.311 3.689 14 O -0.477 6.477 15 C -0.096 4.096 16 C -0.084 4.084 17 C -0.148 4.148 18 C -0.005 4.005 19 C -0.031 4.031 20 C -0.064 4.064 21 N -0.285 5.285 22 H 0.276 0.724 23 C 0.384 3.616 24 O -0.442 6.442 25 N -0.252 5.252 26 C 0.056 3.944 27 C -0.174 4.174 28 C -0.156 4.156 29 C -0.157 4.157 30 C -0.178 4.178 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.152 0.848 40 H 0.143 0.857 41 H 0.184 0.816 42 H 0.122 0.878 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.088 0.912 49 H 0.108 0.892 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.885 -3.549 -8.267 13.367 hybrid contribution -0.790 0.949 0.641 1.391 sum 9.095 -2.600 -7.627 12.151 Atomic orbital electron populations 1.21709 0.96253 1.01173 1.01432 1.21770 0.94922 0.97714 1.02598 1.21703 0.82255 0.96925 1.01270 1.43628 1.04095 1.63755 1.05800 1.19250 1.11028 1.28417 0.89028 0.86973 1.25323 0.97124 0.97075 0.94641 1.69717 1.42762 1.37352 0.99027 0.86956 0.81163 0.81944 0.79607 1.19917 1.21487 1.18332 1.18009 0.86423 0.80776 0.83680 1.90656 1.69676 1.56059 1.31298 1.19557 0.93862 0.99795 0.96356 1.20839 0.92605 0.97448 0.97548 1.19763 0.92978 1.02804 0.99300 1.18206 0.82533 1.01094 0.98662 1.17964 0.90852 1.00135 0.94157 1.21085 0.88371 0.99082 0.97901 1.42963 1.04969 1.47648 1.32893 0.72355 1.15898 0.84115 0.80639 0.80989 1.91003 1.24743 1.64921 1.63577 1.45053 1.05016 1.45289 1.29881 1.22023 0.86016 0.93233 0.93111 1.22497 0.94478 0.99468 1.00927 1.22036 0.96379 0.96559 1.00619 1.22276 0.97270 0.97170 0.99001 1.22944 0.95000 0.99914 0.99961 0.92941 0.92931 0.93008 0.91914 0.91212 0.91614 0.91137 0.91248 0.84778 0.85653 0.81624 0.87849 0.90394 0.91226 0.91694 0.91434 0.91436 0.91207 0.89214 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 37.16 0.37 -1.84 16 2 C -0.13 -2.40 6.24 -26.73 -0.17 -2.57 16 3 C 0.10 2.11 4.06 -4.04 -0.02 2.10 16 4 N -0.45 -10.20 2.19 -116.00 -0.25 -10.46 16 5 C -0.35 -8.27 6.86 -15.00 -0.10 -8.37 16 6 H 0.11 2.79 6.32 -52.49 -0.33 2.46 16 7 C 0.07 1.61 5.35 -17.46 -0.09 1.51 16 8 N -0.85 -21.74 13.95 55.50 0.77 -20.96 16 9 Si 0.88 19.15 24.79 -169.99 -4.21 14.94 16 10 H -0.27 -5.77 6.71 56.52 0.38 -5.39 16 11 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.26 -5.78 7.10 56.52 0.40 -5.38 16 13 C 0.52 11.51 7.32 -12.48 -0.09 11.42 16 14 O -0.59 -14.05 16.47 5.26 0.09 -13.96 16 15 C -0.09 -1.75 5.41 -104.95 -0.57 -2.32 16 16 C -0.06 -1.03 9.60 -39.18 -0.38 -1.41 16 17 C -0.13 -1.78 9.84 -39.53 -0.39 -2.17 16 18 C 0.10 1.49 6.83 -83.77 -0.57 0.92 16 19 C 0.07 1.19 7.24 -83.81 -0.61 0.58 16 20 C -0.04 -0.80 7.69 -39.05 -0.30 -1.10 16 21 N -0.64 -10.19 6.16 -14.33 -0.09 -10.28 16 22 H 0.43 6.18 8.96 -40.82 -0.37 5.81 16 23 C 0.68 11.29 7.89 -87.21 -0.69 10.60 16 24 O -0.56 -10.36 15.52 5.20 0.08 -10.28 16 25 N -0.53 -7.73 2.75 -109.98 -0.30 -8.03 16 26 C 0.16 1.82 3.53 -66.27 -0.23 1.59 16 27 C -0.14 -1.46 6.36 -25.61 -0.16 -1.62 16 28 C -0.12 -1.06 6.80 -25.61 -0.17 -1.24 16 29 C -0.12 -1.03 6.84 -25.03 -0.17 -1.20 16 30 C -0.14 -1.55 6.40 -24.69 -0.16 -1.71 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.07 1.40 3.13 -51.93 -0.16 1.24 16 37 H 0.07 1.47 7.45 -51.93 -0.39 1.08 16 38 H 0.28 6.66 8.31 -40.82 -0.34 6.32 16 39 H 0.13 2.03 8.02 -52.49 -0.42 1.61 16 40 H 0.13 1.35 7.65 -52.49 -0.40 0.95 16 41 H 0.17 3.35 5.84 -52.48 -0.31 3.04 16 42 H 0.10 0.98 7.52 -51.93 -0.39 0.59 16 43 H 0.08 1.04 6.83 -51.93 -0.35 0.68 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.09 1.24 6.35 -51.93 -0.33 0.91 16 50 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 392.88 15.07 5.92 5.92 Total: -1.00 -28.58 392.88 -9.76 -38.34 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -7.26 Total: 11.60 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -4.50 Total: 3.17 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.13 Total: -49.73 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: 0.17 Total: -24.24 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.21 Total: 14.94 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -28.58 -9.76 -38.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069415894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.443 kcal (2) G-P(sol) polarization free energy of solvation -28.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds