Wall clock time and date at job start Tue Mar 31 2020 05:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47022 * 2 1 4 4 N 1.46501 * 109.46913 * 180.02562 * 3 2 1 5 5 C 1.36904 * 120.00114 * 266.77984 * 4 3 2 6 6 H 1.07993 * 120.00007 * 142.34572 * 5 4 3 7 7 C 1.39020 * 119.99646 * 322.34528 * 5 4 3 8 8 N 1.31379 * 119.99754 * 161.50124 * 7 5 4 9 9 Si 1.86799 * 120.00206 * 341.49886 * 7 5 4 10 10 H 1.48505 * 109.46936 * 94.95444 * 9 7 5 11 11 H 1.48503 * 109.47217 * 214.95307 * 9 7 5 12 12 H 1.48502 * 109.47173 * 334.95617 * 9 7 5 13 13 C 1.34781 * 120.00277 * 86.78219 * 4 3 2 14 14 O 1.21618 * 119.99738 * 4.76207 * 13 4 3 15 15 C 1.47518 * 120.00199 * 184.76987 * 13 4 3 16 16 C 1.39918 * 120.02473 * 142.79941 * 15 13 4 17 17 C 1.37624 * 120.14475 * 180.02562 * 16 15 13 18 18 C 1.38991 * 120.05116 * 359.97438 * 17 16 15 19 19 C 1.39884 * 120.09276 * 0.02562 * 18 17 16 20 20 C 1.38230 * 120.03854 * 0.02562 * 19 18 17 21 21 N 1.39385 * 106.74058 * 179.97438 * 19 18 17 22 22 H 0.97001 * 125.86090 * 180.02562 * 21 19 18 23 23 C 1.34633 * 108.25968 * 359.77062 * 21 19 18 24 24 O 1.21683 * 125.13771 * 180.23215 * 23 21 19 25 25 N 1.34598 * 109.71963 * 0.37780 * 23 21 19 26 26 C 1.46500 * 125.75915 * 179.88255 * 25 23 21 27 27 C 1.54262 * 110.48461 * 299.69857 * 26 25 23 28 28 C 1.53881 * 106.59826 * 142.28883 * 27 26 25 29 29 C 1.54263 * 106.63892 * 359.96931 * 28 27 26 30 30 C 1.54892 * 110.48052 * 54.47147 * 26 25 23 31 31 H 1.08996 * 109.47369 * 60.00228 * 1 2 3 32 32 H 1.09005 * 109.46943 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46944 * 299.99996 * 1 2 3 34 34 H 1.09008 * 109.47251 * 239.99823 * 2 1 3 35 35 H 1.08999 * 109.47164 * 120.00515 * 2 1 3 36 36 H 1.08996 * 109.47257 * 60.00196 * 3 2 1 37 37 H 1.08997 * 109.47369 * 299.99510 * 3 2 1 38 38 H 0.97003 * 119.99924 * 180.02562 * 8 7 5 39 39 H 1.08000 * 119.93121 * 0.02562 * 16 15 13 40 40 H 1.07998 * 119.97637 * 179.97438 * 17 16 15 41 41 H 1.08005 * 120.14073 * 179.97438 * 20 19 18 42 42 H 1.08991 * 110.53985 * 177.07943 * 26 25 23 43 43 H 1.08993 * 110.03845 * 23.00108 * 27 26 25 44 44 H 1.09001 * 110.03177 * 261.56478 * 27 26 25 45 45 H 1.08996 * 110.03639 * 119.27881 * 28 27 26 46 46 H 1.09005 * 110.03227 * 240.66453 * 28 27 26 47 47 H 1.09002 * 110.48871 * 95.09642 * 29 28 27 48 48 H 1.09005 * 110.48868 * 217.73914 * 29 28 27 49 49 H 1.09000 * 110.76052 * 321.68972 * 30 26 25 50 50 H 1.08997 * 110.76038 * 85.06751 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1900 1.5088 1.1828 6 1 5.1013 0.9438 1.3117 7 6 3.7125 2.3036 2.2187 8 7 4.1333 2.1043 3.4472 9 14 2.4726 3.6550 1.8638 10 1 1.0993 3.1407 2.0980 11 1 2.7286 4.8099 2.7616 12 1 2.6043 4.0887 0.4496 13 6 4.1784 1.3771 -1.1663 14 8 3.5731 1.4055 -2.2207 15 6 5.6498 1.2709 -1.1631 16 6 6.2964 0.4761 -2.1160 17 6 7.6689 0.3748 -2.1150 18 6 8.4169 1.0628 -1.1669 19 6 7.7767 1.8592 -0.2115 20 6 6.3983 1.9627 -0.2084 21 7 8.7772 2.4106 0.5871 22 1 8.6396 3.0089 1.3381 23 6 9.9667 1.9656 0.1404 24 8 11.0473 2.2540 0.6198 25 7 9.7802 1.1560 -0.9186 26 6 10.8366 0.4818 -1.6774 27 6 11.7980 1.5154 -2.2995 28 6 13.2113 0.9140 -2.2046 29 6 13.0604 -0.4639 -1.5276 30 6 11.7357 -0.3520 -0.7311 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 3.7999 2.6586 4.1700 39 1 5.7172 -0.0591 -2.8539 40 1 8.1651 -0.2398 -2.8515 41 1 5.9023 2.5768 0.5288 42 1 10.4057 -0.1528 -2.4516 43 1 11.7522 2.4509 -1.7421 44 1 11.5354 1.6889 -3.3431 45 1 13.6344 0.7956 -3.2021 46 1 13.8515 1.5581 -1.6018 47 1 12.9890 -1.2517 -2.2775 48 1 13.8967 -0.6517 -0.8541 49 1 11.8955 0.1719 0.2112 50 1 11.3046 -1.3380 -0.5579 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069415894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:21 Heat of formation + Delta-G solvation = -23.001703 kcal Electronic energy + Delta-G solvation = -32592.992652 eV Core-core repulsion = 28392.233782 eV Total energy + Delta-G solvation = -4200.758871 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.58472 -41.04192 -39.34907 -38.71180 -37.27496 -36.67126 -35.18089 -34.70212 -33.54312 -31.42800 -30.19155 -29.69705 -28.91871 -27.59114 -26.84927 -24.23337 -23.95951 -23.31149 -22.71964 -21.44432 -21.17052 -20.63143 -19.60559 -19.26343 -18.20158 -17.87472 -17.34281 -17.15406 -17.04814 -16.63557 -16.35642 -16.01600 -15.75392 -15.52624 -15.09443 -14.98650 -14.83433 -14.66534 -14.54921 -14.38931 -14.12182 -13.78864 -13.73195 -13.32294 -13.21050 -13.16613 -13.00328 -12.58501 -12.50118 -12.38752 -12.19665 -12.12851 -12.03600 -11.97517 -11.89097 -11.87237 -11.50352 -11.34072 -11.30944 -11.20536 -11.08248 -10.54685 -9.76131 -9.34701 -8.85543 -8.49475 -6.10620 0.00816 0.34000 1.18137 1.25140 1.32403 1.41181 1.77818 1.90773 2.16126 2.26026 2.55895 2.74207 3.08664 3.48492 3.52309 3.59234 3.86971 3.92281 3.98190 4.09653 4.14875 4.16537 4.38069 4.39600 4.40119 4.45695 4.48504 4.51870 4.55742 4.55947 4.65972 4.74893 4.80783 4.87850 4.94620 5.03983 5.11294 5.12145 5.12619 5.20287 5.23299 5.24874 5.29759 5.31395 5.46538 5.49242 5.53077 5.59553 5.66502 5.87006 6.05977 6.23582 6.26096 6.92330 7.13191 7.37473 7.73147 8.61728 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.016291 B = 0.002864 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.380083 B = 9774.646747 C =10793.337399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C 0.094 3.906 4 N -0.466 5.466 5 C -0.336 4.336 6 H 0.094 0.906 7 C 0.035 3.965 8 N -0.891 5.891 9 Si 0.918 3.082 10 H -0.258 1.258 11 H -0.288 1.288 12 H -0.269 1.269 13 C 0.519 3.481 14 O -0.610 6.610 15 C -0.118 4.118 16 C -0.059 4.059 17 C -0.103 4.103 18 C 0.103 3.897 19 C 0.058 3.942 20 C -0.051 4.051 21 N -0.639 5.639 22 H 0.438 0.562 23 C 0.674 3.326 24 O -0.587 6.587 25 N -0.522 5.522 26 C 0.147 3.853 27 C -0.134 4.134 28 C -0.116 4.116 29 C -0.112 4.112 30 C -0.141 4.141 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.279 0.721 39 H 0.149 0.851 40 H 0.174 0.826 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.044 0.956 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.053 0.947 47 H 0.093 0.907 48 H 0.071 0.929 49 H 0.054 0.946 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.868 -5.420 -10.776 15.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.163 4.163 3 C -0.028 4.028 4 N -0.185 5.185 5 C -0.463 4.463 6 H 0.111 0.889 7 C -0.170 4.170 8 N -0.527 5.527 9 Si 0.745 3.255 10 H -0.184 1.184 11 H -0.215 1.215 12 H -0.193 1.193 13 C 0.311 3.689 14 O -0.497 6.497 15 C -0.123 4.123 16 C -0.080 4.080 17 C -0.123 4.123 18 C 0.001 3.999 19 C -0.044 4.044 20 C -0.072 4.072 21 N -0.285 5.285 22 H 0.280 0.720 23 C 0.376 3.624 24 O -0.466 6.466 25 N -0.242 5.242 26 C 0.046 3.954 27 C -0.172 4.172 28 C -0.154 4.154 29 C -0.150 4.150 30 C -0.180 4.180 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.167 0.833 40 H 0.191 0.809 41 H 0.158 0.842 42 H 0.155 0.845 43 H 0.063 0.937 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.072 0.928 47 H 0.112 0.888 48 H 0.090 0.910 49 H 0.073 0.927 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.429 -5.226 -10.815 15.907 hybrid contribution -0.840 1.451 1.365 2.162 sum 9.589 -3.776 -9.450 13.982 Atomic orbital electron populations 1.21685 0.93378 1.02920 1.02025 1.21700 0.97405 0.95558 1.01661 1.21838 0.81485 0.98685 1.00807 1.43761 1.04865 1.64263 1.05583 1.19041 1.10406 1.27621 0.89266 0.88863 1.25711 0.98535 0.98297 0.94412 1.69771 1.44603 1.38624 0.99728 0.86279 0.80493 0.80121 0.78633 1.18372 1.21502 1.19338 1.18468 0.87715 0.79616 0.83146 1.90622 1.70561 1.56841 1.31720 1.19508 0.92384 1.02074 0.98295 1.21019 0.93650 0.96622 0.96699 1.20128 0.91869 1.01501 0.98845 1.18418 0.82892 1.00343 0.98256 1.17951 0.90408 1.00929 0.95092 1.20714 0.89158 0.99619 0.97753 1.43027 1.04889 1.47577 1.32962 0.72009 1.16057 0.83750 0.81034 0.81550 1.90983 1.25476 1.65793 1.64392 1.45225 1.05280 1.44514 1.29192 1.22516 0.85600 0.93688 0.93586 1.22495 0.95496 0.97854 1.01373 1.22045 0.95116 0.96379 1.01837 1.22283 0.95800 0.97642 0.99225 1.22924 0.96569 0.99751 0.98730 0.91974 0.90651 0.92788 0.92398 0.92497 0.92142 0.91316 0.91063 0.83317 0.80902 0.84172 0.84500 0.93687 0.89247 0.89213 0.92836 0.88822 0.91018 0.92710 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 9.91 71.98 0.71 -3.26 16 2 C -0.12 -4.49 6.24 30.59 0.19 -4.30 16 3 C 0.09 3.94 4.06 86.38 0.35 4.29 16 4 N -0.47 -21.32 2.19 -639.17 -1.40 -22.72 16 5 C -0.34 -16.39 6.86 84.09 0.58 -15.81 16 6 H 0.09 4.87 6.32 -2.91 -0.02 4.85 16 7 C 0.04 1.75 5.35 84.95 0.45 2.20 16 8 N -0.89 -46.71 13.95 21.68 0.30 -46.41 16 9 Si 0.92 40.01 24.79 68.60 1.70 41.71 16 10 H -0.26 -10.55 6.71 99.48 0.67 -9.88 16 11 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.27 -12.01 7.10 99.48 0.71 -11.30 16 13 C 0.52 23.17 7.32 86.69 0.63 23.81 16 14 O -0.61 -28.95 16.47 -4.09 -0.07 -29.01 16 15 C -0.12 -4.54 5.41 -20.08 -0.11 -4.65 16 16 C -0.06 -1.79 9.60 22.53 0.22 -1.58 16 17 C -0.10 -2.50 9.84 22.31 0.22 -2.29 16 18 C 0.10 2.98 6.83 38.60 0.26 3.24 16 19 C 0.06 1.96 7.24 38.34 0.28 2.24 16 20 C -0.05 -1.95 7.69 22.61 0.17 -1.78 16 21 N -0.64 -20.96 6.16 -317.54 -1.96 -22.91 16 22 H 0.44 13.20 8.96 -92.71 -0.83 12.37 16 23 C 0.67 22.48 7.89 179.16 1.41 23.90 16 24 O -0.59 -22.08 15.52 -4.29 -0.07 -22.15 16 25 N -0.52 -14.37 2.75 -620.19 -1.70 -16.08 16 26 C 0.15 2.95 3.53 46.07 0.16 3.12 16 27 C -0.13 -2.58 6.36 31.32 0.20 -2.38 16 28 C -0.12 -1.79 6.80 31.32 0.21 -1.58 16 29 C -0.11 -1.60 6.84 31.70 0.22 -1.38 16 30 C -0.14 -2.85 6.40 31.91 0.20 -2.65 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 35 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.06 2.57 3.13 -2.39 -0.01 2.56 16 37 H 0.07 2.86 7.45 -2.39 -0.02 2.85 16 38 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 39 H 0.15 4.08 8.02 -2.91 -0.02 4.06 16 40 H 0.17 2.63 7.65 -2.91 -0.02 2.61 16 41 H 0.14 6.04 5.84 -2.91 -0.02 6.02 16 42 H 0.14 1.87 7.52 -2.39 -0.02 1.85 16 43 H 0.04 1.18 6.83 -2.39 -0.02 1.16 16 44 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 47 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.07 1.01 8.14 -2.38 -0.02 1.00 16 49 H 0.05 1.51 6.35 -2.39 -0.02 1.49 16 50 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -64.22 392.88 3.29 -60.94 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: 0.11 Total: 35.49 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 6.37 Total: 21.15 kcal Atomic # 7 Polarization: -103.36 SS G_CDS: -4.76 Total: -108.12 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: -0.13 Total: -51.16 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 1.70 Total: 41.71 kcal Total: -64.22 3.29 -60.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069415894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.934 kcal (2) G-P(sol) polarization free energy of solvation -64.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds