Wall clock time and date at job start Tue Mar 31 2020 05:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3 7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4 8 8 C 1.50703 * 119.94589 * 179.75166 * 7 6 5 9 9 C 1.53002 * 109.46527 * 270.01931 * 8 7 6 10 10 C 1.50703 * 109.46907 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99866 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00049 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99849 * 179.97438 * 12 10 9 14 14 C 1.50704 * 109.47157 * 89.99978 * 13 12 10 15 15 H 1.07992 * 119.99812 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99992 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99822 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00093 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47173 * 90.00328 * 18 16 14 20 20 H 1.48504 * 109.47284 * 210.00648 * 18 16 14 21 21 H 1.48506 * 109.47266 * 330.00606 * 18 16 14 22 22 C 1.46497 * 119.99947 * 359.97438 * 12 10 9 23 23 C 1.50694 * 109.47217 * 89.99910 * 22 12 10 24 24 C 1.34517 * 125.78702 * 89.99784 * 23 22 12 25 25 C 1.41390 * 106.84176 * 180.02562 * 24 23 22 26 26 C 1.34513 * 106.83604 * 0.02562 * 25 24 23 27 27 O 1.34297 * 108.42336 * 359.73902 * 26 25 24 28 28 C 1.38262 * 120.11048 * 359.76434 * 7 6 5 29 29 C 1.38145 * 120.05942 * 359.97438 * 28 7 6 30 30 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 32 32 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 33 33 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 34 34 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 35 35 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 36 36 H 1.08004 * 119.97067 * 180.22662 * 6 5 4 37 37 H 1.08992 * 109.47037 * 30.01395 * 8 7 6 38 38 H 1.08998 * 109.46989 * 150.02347 * 8 7 6 39 39 H 1.09004 * 109.47165 * 299.99904 * 9 8 7 40 40 H 1.08993 * 109.47678 * 59.99781 * 9 8 7 41 41 H 1.09004 * 109.46823 * 209.99409 * 13 12 10 42 42 H 1.08999 * 109.47354 * 329.99615 * 13 12 10 43 43 H 0.97005 * 120.00041 * 180.02562 * 17 16 14 44 44 H 1.09000 * 109.47003 * 210.00186 * 22 12 10 45 45 H 1.08997 * 109.47151 * 330.00145 * 22 12 10 46 46 H 1.08007 * 126.58308 * 0.04226 * 24 23 22 47 47 H 1.07992 * 126.58046 * 179.97438 * 25 24 23 48 48 H 1.08004 * 125.78568 * 180.02562 * 26 25 24 49 49 H 1.08008 * 119.97547 * 179.97438 * 28 7 6 50 50 H 1.08000 * 120.03441 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0021 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 6 8.0951 2.1527 1.4448 10 6 9.5890 2.3509 1.4454 11 8 10.1905 2.4311 0.3953 12 7 10.2565 2.4400 2.6129 13 6 11.7089 2.6321 2.6134 14 6 12.0206 4.1066 2.6125 15 1 11.2172 4.8283 2.6121 16 6 13.3314 4.5341 2.6134 17 7 14.3097 3.6551 2.6144 18 14 13.7178 6.3616 2.6116 19 1 13.8188 6.8476 4.0112 20 1 15.0071 6.5943 1.9124 21 1 12.6345 7.0959 1.9097 22 6 9.5298 2.3448 3.8813 23 6 9.4668 0.9037 4.3173 24 6 10.3706 0.2757 5.0908 25 6 9.9210 -1.0557 5.2475 26 6 8.7698 -1.1616 4.5599 27 8 8.4968 0.0296 4.0030 28 6 5.2549 2.9853 0.0010 29 6 3.8850 2.8070 0.0003 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 3.7884 -0.5724 0.0117 36 1 6.2281 -0.2456 0.0032 37 1 8.0671 1.2509 -0.5113 38 1 7.8338 3.0155 -0.5117 39 1 7.6180 2.9875 1.9584 40 1 7.8513 1.2229 1.9588 41 1 12.1360 2.1710 3.5040 42 1 12.1369 2.1697 1.7240 43 1 15.2319 3.9559 2.6154 44 1 10.0460 2.9320 4.6408 45 1 8.5183 2.7292 3.7502 46 1 11.2674 0.7059 5.5116 47 1 10.4088 -1.8376 5.8104 48 1 8.1649 -2.0523 4.4744 49 1 5.6690 3.9828 0.0011 50 1 3.2282 3.6644 0.0003 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069435642.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:50 Heat of formation + Delta-G solvation = -42.700888 kcal Electronic energy + Delta-G solvation = -31132.248081 eV Core-core repulsion = 26898.342239 eV Total energy + Delta-G solvation = -4233.905843 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.32357 -40.33166 -39.12528 -37.89455 -35.25285 -33.59512 -32.81449 -32.63556 -31.90337 -31.01584 -30.13794 -29.08716 -27.25978 -25.46855 -24.60263 -24.08194 -22.50568 -22.03078 -21.48616 -20.77380 -20.46398 -18.48002 -18.44734 -17.29675 -16.66656 -16.38090 -16.28370 -16.18703 -15.77584 -15.28530 -15.06292 -14.99033 -14.48062 -14.30542 -14.18626 -13.67192 -13.65741 -13.52159 -13.15617 -12.89698 -12.77902 -12.62086 -12.55675 -12.36474 -12.31831 -12.09126 -11.93262 -11.73351 -11.52244 -11.29560 -11.19988 -11.02447 -10.89995 -10.84802 -10.64125 -10.58431 -10.19002 -9.72727 -9.65860 -9.09237 -8.95458 -8.45150 -8.31083 -8.13641 -7.79444 -6.05577 -4.10510 1.25143 1.33181 1.90369 2.82596 2.96045 3.13690 3.29450 3.36478 3.39769 3.48710 3.64119 4.01182 4.43839 4.54761 4.54919 4.72798 4.78928 4.83124 4.87824 4.93689 5.10167 5.14847 5.24365 5.25693 5.27687 5.29623 5.31295 5.39572 5.44036 5.48277 5.51907 5.61373 5.65730 5.83049 5.90284 5.93158 6.01059 6.11064 6.18580 6.19247 6.28058 6.29897 6.37251 6.67284 6.69406 6.71690 7.01915 7.25197 7.32379 7.44048 7.50538 7.90508 8.21044 8.33111 8.88276 9.05460 9.54657 11.02512 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.010674 B = 0.002425 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.506488 B =11542.662628 C =13484.985614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.319 6.319 4 C 0.119 3.881 5 C -0.206 4.206 6 C -0.075 4.075 7 C -0.109 4.109 8 C -0.061 4.061 9 C -0.137 4.137 10 C 0.508 3.492 11 O -0.535 6.535 12 N -0.595 5.595 13 C 0.246 3.754 14 C -0.527 4.527 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.893 5.893 18 Si 0.898 3.102 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.191 3.809 23 C -0.025 4.025 24 C -0.195 4.195 25 C -0.213 4.213 26 C -0.051 4.051 27 O -0.176 6.176 28 C -0.076 4.076 29 C -0.150 4.150 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.033 0.967 42 H 0.044 0.956 43 H 0.263 0.737 44 H 0.115 0.885 45 H 0.084 0.916 46 H 0.150 0.850 47 H 0.144 0.856 48 H 0.197 0.803 49 H 0.131 0.869 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.566 -9.847 0.779 25.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.234 6.234 4 C 0.074 3.926 5 C -0.225 4.225 6 C -0.093 4.093 7 C -0.110 4.110 8 C -0.099 4.099 9 C -0.178 4.178 10 C 0.296 3.704 11 O -0.412 6.412 12 N -0.326 5.326 13 C 0.127 3.873 14 C -0.566 4.566 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.532 5.532 18 Si 0.726 3.274 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 C 0.066 3.934 23 C -0.076 4.076 24 C -0.215 4.215 25 C -0.232 4.232 26 C -0.119 4.119 27 O -0.072 6.072 28 C -0.094 4.094 29 C -0.169 4.169 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.133 0.867 45 H 0.103 0.897 46 H 0.167 0.833 47 H 0.162 0.838 48 H 0.214 0.786 49 H 0.148 0.852 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -23.420 -9.591 0.021 25.308 hybrid contribution 0.625 0.392 0.364 0.823 sum -22.795 -9.198 0.385 24.584 Atomic orbital electron populations 1.21775 0.92838 1.02798 1.03500 1.22753 0.95764 0.82178 1.01374 1.86050 1.19305 1.29095 1.88916 1.18971 0.82026 0.94247 0.97364 1.21189 0.94332 0.97809 1.09188 1.20883 0.94101 0.97010 0.97345 1.19920 0.96051 0.92933 1.02061 1.20281 0.89460 1.04188 0.95945 1.21752 0.93732 1.03852 0.98425 1.20448 0.89134 0.76850 0.84001 1.90672 1.69971 1.49792 1.30767 1.48321 1.10761 1.70156 1.03412 1.19310 0.72506 0.96866 0.98572 1.21422 0.92101 0.91828 1.51238 0.92332 1.24938 0.96118 0.97983 0.95064 1.69936 0.99432 1.33579 1.50261 0.86499 0.77858 0.85094 0.77982 1.20644 1.21132 1.19860 1.19879 0.98627 0.85981 0.88897 1.23318 0.89471 0.94012 1.00804 1.21709 1.01644 0.94351 1.03779 1.21823 0.98058 0.98032 1.05328 1.23915 0.99702 0.88031 1.00271 1.84001 1.43983 1.19162 1.60085 1.20939 0.91935 0.99043 0.97520 1.20407 0.95202 0.94683 1.06592 0.90431 0.91525 0.91554 0.92127 0.92079 0.85789 0.85757 0.90425 0.90150 0.89437 0.89113 0.94940 0.93817 0.92717 0.86699 0.89735 0.83261 0.83814 0.78640 0.85151 0.85397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.28 37.16 0.38 -0.44 16 2 C 0.05 0.40 5.46 37.16 0.20 0.60 16 3 O -0.32 -3.39 10.14 -19.41 -0.20 -3.59 16 4 C 0.12 1.35 6.69 -39.21 -0.26 1.09 16 5 C -0.21 -2.19 9.04 -39.43 -0.36 -2.55 16 6 C -0.08 -0.86 9.69 -39.61 -0.38 -1.24 16 7 C -0.11 -1.35 5.13 -104.60 -0.54 -1.89 16 8 C -0.06 -0.87 4.63 -27.88 -0.13 -0.99 16 9 C -0.14 -2.08 4.24 -27.88 -0.12 -2.20 16 10 C 0.51 10.46 7.67 -10.98 -0.08 10.37 16 11 O -0.54 -13.29 15.56 5.56 0.09 -13.20 16 12 N -0.59 -12.38 2.44 -176.44 -0.43 -12.81 16 13 C 0.25 6.33 5.16 -5.19 -0.03 6.30 16 14 C -0.53 -14.59 9.39 -34.44 -0.32 -14.92 16 15 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 18 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 22 C 0.19 3.10 5.74 -5.20 -0.03 3.07 16 23 C -0.02 -0.39 6.85 -35.63 -0.24 -0.63 16 24 C -0.19 -3.03 10.81 -39.70 -0.43 -3.46 16 25 C -0.21 -2.83 10.91 -39.70 -0.43 -3.26 16 26 C -0.05 -0.63 12.09 29.42 0.36 -0.27 16 27 O -0.18 -2.57 9.55 5.73 0.05 -2.52 16 28 C -0.08 -0.88 9.69 -39.61 -0.38 -1.26 16 29 C -0.15 -1.69 9.99 -39.43 -0.39 -2.08 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.39 7.68 -51.93 -0.40 -0.01 16 34 H 0.06 0.40 7.65 -51.93 -0.40 0.00 16 35 H 0.12 1.04 6.30 -52.49 -0.33 0.71 16 36 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 37 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 38 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16 39 H 0.09 1.18 7.40 -51.93 -0.38 0.79 16 40 H 0.09 1.30 6.93 -51.93 -0.36 0.94 16 41 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 42 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.12 1.82 8.07 -51.93 -0.42 1.40 16 45 H 0.08 1.14 6.44 -51.93 -0.33 0.81 16 46 H 0.15 2.31 8.06 -52.48 -0.42 1.89 16 47 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 48 H 0.20 1.58 8.06 -52.48 -0.42 1.16 16 49 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 50 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 421.69 15.07 6.35 6.35 Total: -1.00 -34.09 421.69 -9.32 -43.41 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -7.61 Total: 3.44 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -3.29 Total: -12.14 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.31 Total: -38.33 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.06 Total: -19.31 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -34.09 -9.32 -43.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069435642.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.713 kcal (2) G-P(sol) polarization free energy of solvation -34.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds