Wall clock time and date at job start Tue Mar 31 2020 05:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00471 * 2 1 4 4 H 1.48501 * 109.47419 * 270.00592 * 3 2 1 5 5 H 1.48511 * 109.46564 * 30.00464 * 3 2 1 6 6 H 1.48500 * 109.47117 * 150.00062 * 3 2 1 7 7 C 1.37875 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99812 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00379 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47501 * 179.97438 * 9 7 2 11 11 C 1.46501 * 120.00237 * 74.79859 * 10 9 7 12 12 C 1.53001 * 109.46974 * 90.00290 * 11 10 9 13 13 N 1.46894 * 109.47279 * 180.02562 * 12 11 10 14 14 C 1.47015 * 111.00073 * 293.63546 * 13 12 11 15 15 C 1.53096 * 109.25710 * 177.60627 * 14 13 12 16 16 O 1.43019 * 109.26163 * 56.84622 * 15 14 13 17 17 C 1.43012 * 113.73765 * 301.33269 * 16 15 14 18 18 C 1.47014 * 111.00306 * 169.99565 * 13 12 11 19 19 C 1.34785 * 119.99787 * 254.80124 * 10 9 7 20 20 O 1.21588 * 119.99591 * 183.55525 * 19 10 9 21 21 C 1.47577 * 119.99946 * 3.55524 * 19 10 9 22 22 C 1.40236 * 119.83032 * 23.58579 * 21 19 10 23 23 C 1.36204 * 120.37459 * 179.76627 * 22 21 19 24 24 C 1.39913 * 119.95915 * 0.49281 * 23 22 21 25 25 C 1.46261 * 133.83742 * 179.79255 * 24 23 22 26 26 C 1.34461 * 107.03129 * 179.97438 * 25 24 23 27 27 N 1.36554 * 109.97738 * 359.97438 * 26 25 24 28 28 H 0.96999 * 125.07101 * 180.02562 * 27 26 25 29 29 C 1.37825 * 109.86287 * 0.02562 * 27 26 25 30 30 C 1.38690 * 133.37583 * 180.02562 * 29 27 26 31 31 H 0.97005 * 120.00077 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.46861 * 59.99274 * 9 7 2 33 33 H 1.09003 * 109.46691 * 299.99856 * 9 7 2 34 34 H 1.08999 * 109.47135 * 330.00612 * 11 10 9 35 35 H 1.08993 * 109.47193 * 209.99857 * 11 10 9 36 36 H 1.08999 * 109.47438 * 60.00066 * 12 11 10 37 37 H 1.09008 * 109.46901 * 300.00242 * 12 11 10 38 38 H 1.08999 * 109.50094 * 297.53729 * 14 13 12 39 39 H 1.08992 * 109.50509 * 57.67140 * 14 13 12 40 40 H 1.09007 * 109.50747 * 296.91361 * 15 14 13 41 41 H 1.08999 * 109.54251 * 176.80772 * 15 14 13 42 42 H 1.09004 * 109.50691 * 298.72869 * 17 16 15 43 43 H 1.08999 * 109.54059 * 178.62606 * 17 16 15 44 44 H 1.09002 * 109.50844 * 302.33272 * 18 13 12 45 45 H 1.09009 * 109.50178 * 62.41485 * 18 13 12 46 46 H 1.07994 * 119.81499 * 359.97438 * 22 21 19 47 47 H 1.08001 * 120.01948 * 180.25267 * 23 22 21 48 48 H 1.07996 * 126.48148 * 359.97341 * 25 24 23 49 49 H 1.07994 * 125.00534 * 180.02562 * 26 25 24 50 50 H 1.07991 * 120.16240 * 359.93333 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4643 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 7 3.9997 -2.5754 -0.0010 11 6 3.9297 -3.3772 -1.2251 12 6 5.2177 -3.1925 -2.0300 13 7 5.1474 -3.9960 -3.2578 14 6 5.1399 -5.4329 -2.9473 15 6 5.0058 -6.2298 -4.2477 16 8 6.0715 -5.8724 -5.1320 17 6 6.1083 -4.4800 -5.4560 18 6 6.2536 -3.6654 -4.1679 19 6 4.5133 -3.1085 1.1254 20 8 4.9776 -4.2321 1.1093 21 6 4.5120 -2.3284 2.3781 22 6 3.5833 -1.2924 2.5538 23 6 3.5691 -0.5685 3.7075 24 6 4.4917 -0.8507 4.7208 25 6 4.7485 -0.2826 6.0439 26 6 5.7758 -0.9690 6.5745 27 7 6.1965 -1.9295 5.6998 28 1 6.9245 -2.5499 5.8611 29 6 5.4326 -1.8859 4.5534 30 6 5.4365 -2.6215 3.3777 31 1 -0.4850 0.8401 0.0004 32 1 3.8751 -0.6805 0.8888 33 1 3.8744 -0.6802 -0.8912 34 1 3.0779 -3.0536 -1.8233 35 1 3.8120 -4.4289 -0.9643 36 1 6.0696 -3.5161 -1.4320 37 1 5.3355 -2.1406 -2.2908 38 1 6.0714 -5.7026 -2.4496 39 1 4.2981 -5.6595 -2.2931 40 1 4.0498 -6.0001 -4.7184 41 1 5.0566 -7.2963 -4.0286 42 1 5.1844 -4.1994 -5.9618 43 1 6.9567 -4.2803 -6.1106 44 1 6.2247 -2.6018 -4.4046 45 1 7.2029 -3.9061 -3.6893 46 1 2.8731 -1.0695 1.7714 47 1 2.8487 0.2254 3.8383 48 1 4.2141 0.5336 6.5070 49 1 6.2042 -0.7879 7.5491 50 1 6.1532 -3.4171 3.2378 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069443254.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:57 Heat of formation + Delta-G solvation = 23.558679 kcal Electronic energy + Delta-G solvation = -32232.524995 eV Core-core repulsion = 28033.785134 eV Total energy + Delta-G solvation = -4198.739861 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.05431 -39.76087 -39.24506 -36.42456 -36.07539 -35.01502 -32.70146 -31.70303 -31.27359 -30.50015 -28.99545 -28.59794 -27.92289 -26.00423 -24.05567 -23.29921 -22.73491 -22.01714 -21.34512 -20.54089 -20.34277 -18.78913 -17.77369 -17.14312 -16.70210 -16.57914 -16.15564 -15.78919 -15.32634 -15.09975 -14.89261 -14.88032 -14.51649 -14.30274 -14.22896 -13.91770 -13.59845 -13.49537 -13.28465 -13.06631 -12.88558 -12.81326 -12.43621 -12.40986 -12.22525 -12.00312 -11.46662 -11.38063 -11.26477 -11.09813 -10.97111 -10.78106 -10.68101 -10.34710 -10.32390 -9.88294 -9.73818 -9.66015 -9.50396 -9.20774 -8.83972 -8.36549 -7.93119 -7.79160 -7.45934 -6.32759 -4.35692 1.15394 1.93152 2.74942 3.13440 3.17056 3.22548 3.24839 3.48362 3.54748 3.80495 4.12054 4.18290 4.37314 4.83883 4.89190 4.96590 4.98714 5.00413 5.03128 5.11305 5.17733 5.26003 5.41405 5.49728 5.51611 5.54573 5.59337 5.62232 5.74387 5.74718 5.82043 5.86800 5.92123 5.94386 6.09237 6.17727 6.27801 6.32703 6.39997 6.45906 6.67539 6.82856 6.92863 6.95682 6.98209 7.00889 7.09013 7.13867 7.23363 7.37130 7.51772 7.61818 8.00038 8.33566 8.73675 8.82757 9.24314 10.78412 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.009080 B = 0.003255 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.888128 B = 8599.239039 C =10910.959632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.083 3.917 3 Si 0.860 3.140 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.544 4.544 8 H 0.084 0.916 9 C 0.176 3.824 10 N -0.579 5.579 11 C 0.127 3.873 12 C 0.044 3.956 13 N -0.532 5.532 14 C 0.015 3.985 15 C 0.064 3.936 16 O -0.390 6.390 17 C 0.065 3.935 18 C 0.018 3.982 19 C 0.560 3.440 20 O -0.568 6.568 21 C -0.110 4.110 22 C -0.131 4.131 23 C -0.094 4.094 24 C -0.087 4.087 25 C -0.212 4.212 26 C 0.049 3.951 27 N -0.597 5.597 28 H 0.412 0.588 29 C 0.070 3.930 30 C -0.074 4.074 31 H 0.270 0.730 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.077 0.923 38 H 0.042 0.958 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.060 0.940 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.040 0.960 46 H 0.202 0.798 47 H 0.124 0.876 48 H 0.144 0.856 49 H 0.167 0.833 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.306 -3.116 2.142 12.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.122 4.122 3 Si 0.686 3.314 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.582 4.582 8 H 0.102 0.898 9 C 0.056 3.944 10 N -0.308 5.308 11 C 0.003 3.997 12 C -0.085 4.085 13 N -0.258 5.258 14 C -0.113 4.113 15 C -0.013 4.013 16 O -0.308 6.308 17 C -0.012 4.012 18 C -0.110 4.110 19 C 0.350 3.650 20 O -0.450 6.450 21 C -0.114 4.114 22 C -0.149 4.149 23 C -0.113 4.113 24 C -0.092 4.092 25 C -0.237 4.237 26 C -0.078 4.078 27 N -0.200 5.200 28 H 0.249 0.751 29 C -0.036 4.036 30 C -0.096 4.096 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.095 0.905 38 H 0.061 0.939 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.114 0.886 42 H 0.079 0.921 43 H 0.113 0.887 44 H 0.104 0.896 45 H 0.058 0.942 46 H 0.218 0.782 47 H 0.142 0.858 48 H 0.162 0.838 49 H 0.184 0.816 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.138 -3.649 1.829 12.806 hybrid contribution 1.224 0.835 0.769 1.670 sum 13.363 -2.814 2.598 13.901 Atomic orbital electron populations 1.69878 1.06231 1.27561 1.47696 1.24887 0.94743 0.98849 0.93766 0.87072 0.80977 0.84022 0.79359 1.19645 1.20476 1.18118 1.21268 0.88831 0.95373 1.52718 0.89792 1.20802 0.95977 0.78574 0.99088 1.47688 1.59037 1.15306 1.08797 1.21234 0.97159 0.96120 0.85178 1.22503 0.98588 0.97885 0.89528 1.62126 1.43852 1.04685 1.15087 1.22846 1.02276 0.88254 0.97952 1.22691 0.90539 0.98916 0.89137 1.87949 1.51914 1.24671 1.66292 1.22645 1.02251 0.80944 0.95376 1.22767 0.92771 1.00993 0.94477 1.18205 0.77514 0.85728 0.83549 1.90674 1.48452 1.19805 1.86033 1.19571 0.98614 0.98777 0.94465 1.23040 0.99459 0.92807 0.99561 1.20327 0.98013 1.00817 0.92133 1.19480 0.97318 0.97020 0.95377 1.21724 1.01988 1.04756 0.95271 1.21747 0.98372 0.92042 0.95664 1.41663 1.31900 1.32337 1.14137 0.75143 1.18018 0.95973 1.00238 0.89345 1.19952 1.00009 0.99125 0.90507 0.92027 0.91395 0.95787 0.88675 0.90831 0.94514 0.90476 0.93948 0.88967 0.92097 0.88582 0.92139 0.88718 0.89603 0.94209 0.78217 0.85810 0.83797 0.81601 0.85823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.24 13.96 55.43 0.77 -23.47 16 2 C 0.08 2.13 5.38 -17.82 -0.10 2.04 16 3 Si 0.86 18.88 27.42 -169.99 -4.66 14.22 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.26 -5.35 6.54 56.52 0.37 -4.98 16 7 C -0.54 -13.58 7.71 -34.44 -0.27 -13.84 16 8 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 9 C 0.18 3.81 3.73 -5.20 -0.02 3.79 16 10 N -0.58 -11.87 2.50 -176.27 -0.44 -12.31 16 11 C 0.13 2.33 5.26 -4.04 -0.02 2.30 16 12 C 0.04 0.70 5.28 -3.83 -0.02 0.68 16 13 N -0.53 -7.59 4.73 -234.31 -1.11 -8.69 16 14 C 0.01 0.20 5.44 -3.71 -0.02 0.18 16 15 C 0.06 0.75 7.01 37.21 0.26 1.01 16 16 O -0.39 -5.00 10.83 -35.23 -0.38 -5.38 16 17 C 0.06 0.71 7.01 37.21 0.26 0.97 16 18 C 0.02 0.22 5.64 -3.71 -0.02 0.20 16 19 C 0.56 11.83 7.49 -12.45 -0.09 11.73 16 20 O -0.57 -12.69 16.17 5.29 0.09 -12.61 16 21 C -0.11 -2.20 5.60 -104.95 -0.59 -2.78 16 22 C -0.13 -2.65 7.40 -39.56 -0.29 -2.95 16 23 C -0.09 -1.73 10.03 -39.69 -0.40 -2.13 16 24 C -0.09 -1.46 6.37 -105.04 -0.67 -2.13 16 25 C -0.21 -2.81 11.08 -37.69 -0.42 -3.23 16 26 C 0.05 0.52 11.81 -16.78 -0.20 0.33 16 27 N -0.60 -7.09 6.06 -10.68 -0.06 -7.15 16 28 H 0.41 3.54 8.96 -40.82 -0.37 3.17 16 29 C 0.07 1.11 7.26 -84.00 -0.61 0.50 16 30 C -0.07 -1.31 9.60 -39.03 -0.37 -1.68 16 31 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.07 1.48 3.10 -52.44 -0.16 1.31 16 33 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 34 H 0.09 1.83 7.88 -51.93 -0.41 1.42 16 35 H 0.07 1.37 5.85 -51.93 -0.30 1.06 16 36 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16 37 H 0.08 1.22 8.04 -51.92 -0.42 0.81 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 1.26 6.38 -51.93 -0.33 0.93 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 45 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 46 H 0.20 4.48 2.81 -52.49 -0.15 4.33 16 47 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 48 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 49 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 50 H 0.12 2.03 7.81 -52.49 -0.41 1.62 16 LS Contribution 395.53 15.07 5.96 5.96 Total: -1.00 -30.81 395.53 -10.60 -41.41 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -7.18 Total: 13.03 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -3.58 Total: -5.01 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.84 Total: -51.62 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.30 Total: -17.99 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -4.66 Total: 14.22 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.81 -10.60 -41.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069443254.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.966 kcal (2) G-P(sol) polarization free energy of solvation -30.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds