Wall clock time and date at job start Tue Mar 31 2020 05:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00471 * 2 1 4 4 H 1.48501 * 109.47419 * 270.00592 * 3 2 1 5 5 H 1.48511 * 109.46564 * 30.00464 * 3 2 1 6 6 H 1.48500 * 109.47117 * 150.00062 * 3 2 1 7 7 C 1.37875 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99812 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00379 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47501 * 179.97438 * 9 7 2 11 11 C 1.46501 * 120.00237 * 74.79859 * 10 9 7 12 12 C 1.53001 * 109.46974 * 90.00290 * 11 10 9 13 13 N 1.46894 * 109.47279 * 180.02562 * 12 11 10 14 14 C 1.47015 * 111.00073 * 293.63546 * 13 12 11 15 15 C 1.53096 * 109.25710 * 177.60627 * 14 13 12 16 16 O 1.43019 * 109.26163 * 56.84622 * 15 14 13 17 17 C 1.43012 * 113.73765 * 301.33269 * 16 15 14 18 18 C 1.47014 * 111.00306 * 169.99565 * 13 12 11 19 19 C 1.34785 * 119.99787 * 254.80124 * 10 9 7 20 20 O 1.21588 * 119.99591 * 183.55525 * 19 10 9 21 21 C 1.47577 * 119.99946 * 3.55524 * 19 10 9 22 22 C 1.40236 * 119.83032 * 23.58579 * 21 19 10 23 23 C 1.36204 * 120.37459 * 179.76627 * 22 21 19 24 24 C 1.39913 * 119.95915 * 0.49281 * 23 22 21 25 25 C 1.46261 * 133.83742 * 179.79255 * 24 23 22 26 26 C 1.34461 * 107.03129 * 179.97438 * 25 24 23 27 27 N 1.36554 * 109.97738 * 359.97438 * 26 25 24 28 28 H 0.96999 * 125.07101 * 180.02562 * 27 26 25 29 29 C 1.37825 * 109.86287 * 0.02562 * 27 26 25 30 30 C 1.38690 * 133.37583 * 180.02562 * 29 27 26 31 31 H 0.97005 * 120.00077 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.46861 * 59.99274 * 9 7 2 33 33 H 1.09003 * 109.46691 * 299.99856 * 9 7 2 34 34 H 1.08999 * 109.47135 * 330.00612 * 11 10 9 35 35 H 1.08993 * 109.47193 * 209.99857 * 11 10 9 36 36 H 1.08999 * 109.47438 * 60.00066 * 12 11 10 37 37 H 1.09008 * 109.46901 * 300.00242 * 12 11 10 38 38 H 1.08999 * 109.50094 * 297.53729 * 14 13 12 39 39 H 1.08992 * 109.50509 * 57.67140 * 14 13 12 40 40 H 1.09007 * 109.50747 * 296.91361 * 15 14 13 41 41 H 1.08999 * 109.54251 * 176.80772 * 15 14 13 42 42 H 1.09004 * 109.50691 * 298.72869 * 17 16 15 43 43 H 1.08999 * 109.54059 * 178.62606 * 17 16 15 44 44 H 1.09002 * 109.50844 * 302.33272 * 18 13 12 45 45 H 1.09009 * 109.50178 * 62.41485 * 18 13 12 46 46 H 1.07994 * 119.81499 * 359.97438 * 22 21 19 47 47 H 1.08001 * 120.01948 * 180.25267 * 23 22 21 48 48 H 1.07996 * 126.48148 * 359.97341 * 25 24 23 49 49 H 1.07994 * 125.00534 * 180.02562 * 26 25 24 50 50 H 1.07991 * 120.16240 * 359.93333 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4643 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 7 3.9997 -2.5754 -0.0010 11 6 3.9297 -3.3772 -1.2251 12 6 5.2177 -3.1925 -2.0300 13 7 5.1474 -3.9960 -3.2578 14 6 5.1399 -5.4329 -2.9473 15 6 5.0058 -6.2298 -4.2477 16 8 6.0715 -5.8724 -5.1320 17 6 6.1083 -4.4800 -5.4560 18 6 6.2536 -3.6654 -4.1679 19 6 4.5133 -3.1085 1.1254 20 8 4.9776 -4.2321 1.1093 21 6 4.5120 -2.3284 2.3781 22 6 3.5833 -1.2924 2.5538 23 6 3.5691 -0.5685 3.7075 24 6 4.4917 -0.8507 4.7208 25 6 4.7485 -0.2826 6.0439 26 6 5.7758 -0.9690 6.5745 27 7 6.1965 -1.9295 5.6998 28 1 6.9245 -2.5499 5.8611 29 6 5.4326 -1.8859 4.5534 30 6 5.4365 -2.6215 3.3777 31 1 -0.4850 0.8401 0.0004 32 1 3.8751 -0.6805 0.8888 33 1 3.8744 -0.6802 -0.8912 34 1 3.0779 -3.0536 -1.8233 35 1 3.8120 -4.4289 -0.9643 36 1 6.0696 -3.5161 -1.4320 37 1 5.3355 -2.1406 -2.2908 38 1 6.0714 -5.7026 -2.4496 39 1 4.2981 -5.6595 -2.2931 40 1 4.0498 -6.0001 -4.7184 41 1 5.0566 -7.2963 -4.0286 42 1 5.1844 -4.1994 -5.9618 43 1 6.9567 -4.2803 -6.1106 44 1 6.2247 -2.6018 -4.4046 45 1 7.2029 -3.9061 -3.6893 46 1 2.8731 -1.0695 1.7714 47 1 2.8487 0.2254 3.8383 48 1 4.2141 0.5336 6.5070 49 1 6.2042 -0.7879 7.5491 50 1 6.1532 -3.4171 3.2378 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069443254.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:56 Heat of formation + Delta-G solvation = 2.874908 kcal Electronic energy + Delta-G solvation = -32233.421911 eV Core-core repulsion = 28033.785134 eV Total energy + Delta-G solvation = -4199.636777 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.26685 -41.13727 -40.42771 -37.73692 -37.54101 -36.43082 -34.60203 -32.93445 -32.30550 -31.86762 -30.28375 -29.96676 -29.47499 -27.23842 -25.07504 -24.75985 -24.35794 -23.36939 -22.71511 -21.59485 -21.40239 -20.28904 -19.07671 -19.05117 -17.96432 -17.86733 -17.27710 -17.11010 -16.68955 -16.46563 -16.17738 -15.98405 -15.84921 -15.81990 -15.44628 -15.22467 -14.89921 -14.82574 -14.66547 -14.56182 -14.24664 -14.09068 -13.93404 -13.62893 -13.59199 -13.15170 -12.97730 -12.69296 -12.59700 -12.50810 -12.34874 -12.20961 -11.97735 -11.84984 -11.73109 -11.51837 -11.39025 -10.89942 -10.76727 -10.72724 -10.72044 -9.63988 -9.45105 -9.14552 -8.64733 -8.32658 -6.39814 -0.18031 0.53986 1.38914 1.41960 1.50917 1.62796 1.95154 2.04829 2.30979 2.32251 2.80381 2.92437 2.96322 3.01967 3.60151 3.78470 3.83397 3.90817 3.96712 4.02391 4.09212 4.16521 4.28726 4.31102 4.36149 4.38124 4.43135 4.45546 4.55578 4.62867 4.68672 4.69848 4.77918 4.78919 4.82545 4.86147 4.89421 4.97883 5.00521 5.06032 5.07931 5.35574 5.48338 5.58791 5.63091 5.75205 5.81346 5.86764 5.90170 6.10982 6.14104 6.16862 6.54640 6.66969 6.72654 7.13352 7.26253 8.82557 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.009080 B = 0.003255 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.888128 B = 8599.239039 C =10910.959632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.036 3.964 3 Si 0.922 3.078 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.238 1.238 7 C -0.537 4.537 8 H 0.037 0.963 9 C 0.187 3.813 10 N -0.584 5.584 11 C 0.130 3.870 12 C 0.060 3.940 13 N -0.539 5.539 14 C 0.015 3.985 15 C 0.068 3.932 16 O -0.402 6.402 17 C 0.065 3.935 18 C 0.017 3.983 19 C 0.556 3.444 20 O -0.589 6.589 21 C -0.141 4.141 22 C -0.151 4.151 23 C -0.104 4.104 24 C -0.099 4.099 25 C -0.240 4.240 26 C 0.086 3.914 27 N -0.582 5.582 28 H 0.431 0.569 29 C 0.059 3.941 30 C -0.065 4.065 31 H 0.272 0.728 32 H 0.078 0.922 33 H 0.034 0.966 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.025 0.975 37 H 0.081 0.919 38 H 0.032 0.968 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.115 0.885 42 H 0.063 0.937 43 H 0.121 0.879 44 H 0.098 0.902 45 H 0.036 0.964 46 H 0.176 0.824 47 H 0.129 0.871 48 H 0.164 0.836 49 H 0.222 0.778 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.313 -1.955 3.930 15.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.166 4.166 3 Si 0.744 3.256 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.161 1.161 7 C -0.575 4.575 8 H 0.055 0.945 9 C 0.066 3.934 10 N -0.312 5.312 11 C 0.006 3.994 12 C -0.069 4.069 13 N -0.265 5.265 14 C -0.113 4.113 15 C -0.009 4.009 16 O -0.321 6.321 17 C -0.012 4.012 18 C -0.111 4.111 19 C 0.347 3.653 20 O -0.472 6.472 21 C -0.145 4.145 22 C -0.169 4.169 23 C -0.123 4.123 24 C -0.104 4.104 25 C -0.264 4.264 26 C -0.041 4.041 27 N -0.187 5.187 28 H 0.271 0.729 29 C -0.048 4.048 30 C -0.087 4.087 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.043 0.957 37 H 0.099 0.901 38 H 0.050 0.950 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.082 0.918 43 H 0.139 0.861 44 H 0.116 0.884 45 H 0.054 0.946 46 H 0.192 0.808 47 H 0.147 0.853 48 H 0.182 0.818 49 H 0.239 0.761 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 15.181 -2.513 3.609 15.805 hybrid contribution 0.317 0.386 0.411 0.647 sum 15.498 -2.127 4.020 16.152 Atomic orbital electron populations 1.70016 1.08144 1.28608 1.49835 1.25629 0.95318 1.02403 0.93210 0.86089 0.80374 0.79297 0.79858 1.18802 1.20234 1.16134 1.21255 0.90546 0.93621 1.52093 0.94458 1.20629 0.93572 0.79466 0.99756 1.47729 1.58854 1.15114 1.09489 1.21222 0.98110 0.95304 0.84730 1.22238 0.96352 0.98426 0.89882 1.62143 1.45146 1.04900 1.14292 1.22855 1.01308 0.88143 0.98977 1.22733 0.90543 0.99656 0.87921 1.87936 1.52199 1.25709 1.66261 1.22803 1.03623 0.79853 0.94896 1.22885 0.91660 1.02114 0.94448 1.18517 0.77057 0.85635 0.84074 1.90637 1.49633 1.20544 1.86422 1.19487 1.00478 0.99775 0.94810 1.22681 0.99857 0.94300 1.00111 1.20409 0.98842 1.00819 0.92219 1.19851 0.96652 0.97383 0.96530 1.22059 1.03843 1.06532 0.93975 1.22610 0.96043 0.89040 0.96430 1.41782 1.31523 1.32643 1.12720 0.72918 1.18006 0.96775 0.99905 0.90118 1.20004 0.99106 0.98991 0.90551 0.91904 0.90482 0.94778 0.90097 0.91623 0.95717 0.90054 0.94963 0.89937 0.91768 0.86680 0.91825 0.86095 0.88360 0.94556 0.80763 0.85293 0.81834 0.76115 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.62 13.96 21.45 0.30 -53.32 16 2 C 0.04 1.89 5.38 84.66 0.46 2.35 16 3 Si 0.92 39.33 27.42 68.60 1.88 41.21 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.24 -9.37 6.54 99.48 0.65 -8.72 16 7 C -0.54 -28.35 7.71 25.60 0.20 -28.16 16 8 H 0.04 2.26 8.06 -2.91 -0.02 2.24 16 9 C 0.19 8.36 3.73 85.63 0.32 8.67 16 10 N -0.58 -25.15 2.50 -829.87 -2.07 -27.22 16 11 C 0.13 5.05 5.26 86.38 0.45 5.50 16 12 C 0.06 1.98 5.28 86.30 0.46 2.44 16 13 N -0.54 -15.52 4.73 -895.22 -4.23 -19.75 16 14 C 0.02 0.42 5.44 86.31 0.47 0.89 16 15 C 0.07 1.56 7.01 72.01 0.50 2.06 16 16 O -0.40 -9.81 10.83 -148.98 -1.61 -11.42 16 17 C 0.06 1.32 7.01 72.01 0.50 1.82 16 18 C 0.02 0.39 5.64 86.31 0.49 0.88 16 19 C 0.56 24.55 7.49 86.71 0.65 25.20 16 20 O -0.59 -27.39 16.17 -3.99 -0.06 -27.45 16 21 C -0.14 -5.80 5.60 -20.08 -0.11 -5.91 16 22 C -0.15 -6.34 7.40 22.28 0.16 -6.17 16 23 C -0.10 -3.85 10.03 22.20 0.22 -3.63 16 24 C -0.10 -3.14 6.37 -20.14 -0.13 -3.27 16 25 C -0.24 -5.45 11.08 23.49 0.26 -5.18 16 26 C 0.09 1.38 11.81 83.09 0.98 2.36 16 27 N -0.58 -11.33 6.06 -187.72 -1.14 -12.47 16 28 H 0.43 5.38 8.96 -92.71 -0.83 4.55 16 29 C 0.06 1.76 7.26 38.96 0.28 2.04 16 30 C -0.07 -2.26 9.60 22.63 0.22 -2.05 16 31 H 0.27 14.64 8.31 -92.70 -0.77 13.87 16 32 H 0.08 3.42 3.10 -2.87 -0.01 3.41 16 33 H 0.03 1.45 7.57 -2.39 -0.02 1.44 16 34 H 0.08 3.34 7.88 -2.39 -0.02 3.32 16 35 H 0.07 2.63 5.85 -2.39 -0.01 2.62 16 36 H 0.02 0.87 8.12 -2.39 -0.02 0.85 16 37 H 0.08 2.59 8.04 -2.38 -0.02 2.57 16 38 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 2.39 6.38 -2.39 -0.02 2.37 16 40 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 43 H 0.12 1.81 8.14 -2.39 -0.02 1.80 16 44 H 0.10 2.04 8.09 -2.39 -0.02 2.02 16 45 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 46 H 0.18 8.21 2.81 -2.91 -0.01 8.20 16 47 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 48 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 49 H 0.22 1.13 8.06 -2.91 -0.02 1.11 16 50 H 0.13 4.24 7.81 -2.92 -0.02 4.22 16 Total: -1.00 -71.44 395.53 -0.47 -71.91 By element: Atomic # 1 Polarization: 38.60 SS G_CDS: 0.09 Total: 38.69 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 6.39 Total: -0.17 kcal Atomic # 7 Polarization: -105.62 SS G_CDS: -7.14 Total: -112.77 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -1.68 Total: -38.87 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 1.88 Total: 41.21 kcal Total: -71.44 -0.47 -71.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069443254.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.781 kcal (2) G-P(sol) polarization free energy of solvation -71.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds