Wall clock time and date at job start Tue Mar 31 2020 05:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38286 * 119.92880 * 2 1 4 4 C 1.38111 * 120.07047 * 179.97438 * 3 2 1 5 5 C 1.38877 * 119.93252 * 0.02562 * 4 3 2 6 6 N 1.39918 * 120.07080 * 179.97438 * 5 4 3 7 7 C 1.46501 * 120.00256 * 292.12118 * 6 5 4 8 8 C 1.50698 * 109.47062 * 270.00377 * 7 6 5 9 9 H 1.07991 * 120.00309 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99429 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00564 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99670 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47389 * 59.99974 * 12 10 8 14 14 H 1.48501 * 109.47222 * 180.02562 * 12 10 8 15 15 H 1.48510 * 109.47389 * 299.99848 * 12 10 8 16 16 C 1.34779 * 119.99985 * 112.12607 * 6 5 4 17 17 O 1.21286 * 119.99867 * 355.26637 * 16 6 5 18 18 C 1.50692 * 120.00152 * 175.26304 * 16 6 5 19 19 N 1.46497 * 109.47265 * 179.97438 * 18 16 6 20 20 C 1.36840 * 119.69013 * 89.99895 * 19 18 16 21 21 C 1.35025 * 119.68568 * 180.25216 * 20 19 18 22 22 C 1.41584 * 119.11075 * 359.47491 * 21 20 19 23 23 O 1.21783 * 120.30394 * 180.28651 * 22 21 20 24 24 N 1.34835 * 119.38577 * 0.56949 * 22 21 20 25 25 C 1.46500 * 119.86676 * 179.71641 * 24 22 21 26 26 C 1.34545 * 119.69422 * 270.02605 * 19 18 16 27 27 O 1.21592 * 119.52892 * 359.97438 * 26 19 18 28 28 C 1.38871 * 119.85487 * 0.26960 * 5 4 3 29 29 C 1.38120 * 119.93171 * 359.42565 * 28 5 4 30 30 H 1.08995 * 109.47476 * 89.99893 * 1 2 3 31 31 H 1.09004 * 109.46827 * 210.00061 * 1 2 3 32 32 H 1.09001 * 109.47047 * 329.99223 * 1 2 3 33 33 H 1.07998 * 119.96531 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.03794 * 179.97438 * 4 3 2 35 35 H 1.08995 * 109.46975 * 30.00305 * 7 6 5 36 36 H 1.08998 * 109.47123 * 150.00438 * 7 6 5 37 37 H 0.97002 * 120.00327 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.47629 * 60.00294 * 18 16 6 39 39 H 1.08997 * 109.47736 * 300.00256 * 18 16 6 40 40 H 1.07997 * 120.15842 * 359.97438 * 20 19 18 41 41 H 1.07999 * 120.44252 * 179.75293 * 21 20 19 42 42 H 1.09000 * 109.47311 * 269.97759 * 25 24 22 43 43 H 1.08997 * 109.47356 * 29.98028 * 25 24 22 44 44 H 1.09001 * 109.47110 * 149.97988 * 25 24 22 45 45 H 1.08001 * 120.03642 * 179.72845 * 28 5 4 46 46 H 1.07996 * 119.96559 * 180.29942 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 0.0005 5 6 4.2739 0.0001 0.0005 6 7 5.6731 0.0001 0.0005 7 6 6.4056 0.4779 -1.1748 8 6 6.6568 -0.6744 -2.1128 9 1 6.3063 -1.6638 -1.8588 10 6 7.3342 -0.4655 -3.2955 11 7 7.7606 0.7394 -3.6051 12 14 7.6449 -1.8938 -4.4586 13 1 6.3472 -2.4752 -4.8864 14 1 8.3875 -1.4095 -5.6499 15 1 8.4477 -2.9323 -3.7640 16 6 6.3470 -0.4394 1.0818 17 8 5.7437 -0.7541 2.0858 18 6 7.8501 -0.5400 1.0433 19 7 8.3393 -1.0390 2.3309 20 6 8.4806 -2.3860 2.5264 21 6 8.9266 -2.8460 3.7149 22 6 9.2507 -1.9189 4.7347 23 8 9.6598 -2.3097 5.8131 24 7 9.0967 -0.5996 4.5028 25 6 9.4229 0.3687 5.5527 26 6 8.6448 -0.1687 3.3104 27 8 8.5117 1.0241 3.1153 28 6 3.5781 -1.2017 -0.0057 29 6 2.1969 -1.1984 0.0002 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5140 33 1 1.6552 2.1327 -0.0004 34 1 4.1163 2.1382 0.0001 35 1 5.8166 1.2400 -1.6850 36 1 7.3580 0.9048 -0.8605 37 1 8.2375 0.8863 -4.4370 38 1 8.2754 0.4449 0.8505 39 1 8.1482 -1.2260 0.2505 40 1 8.2323 -3.0780 1.7353 41 1 9.0390 -3.9068 3.8838 42 1 8.5380 0.5575 6.1605 43 1 10.2174 -0.0318 6.1822 44 1 9.7559 1.3009 5.0964 45 1 4.1163 -2.1380 -0.0101 46 1 1.6552 -2.1327 0.0002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069519913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:59 Heat of formation + Delta-G solvation = -32.064468 kcal Electronic energy + Delta-G solvation = -32080.984407 eV Core-core repulsion = 27743.999451 eV Total energy + Delta-G solvation = -4336.984956 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.29012 -40.13236 -39.00705 -38.23020 -37.04128 -35.41304 -35.11855 -33.02712 -32.13071 -31.41805 -30.64577 -28.53521 -27.77269 -27.52712 -25.69423 -23.83556 -23.51935 -23.24711 -22.23934 -21.47663 -19.41759 -19.16625 -17.70302 -17.32253 -16.97803 -16.92384 -16.65747 -16.08736 -15.55234 -15.29298 -15.06332 -15.04214 -14.65450 -14.37692 -14.18422 -13.85011 -13.71429 -13.57038 -13.40036 -13.32345 -13.14397 -12.90745 -12.59686 -12.34224 -12.22639 -11.91462 -11.83981 -11.74733 -11.58414 -11.40248 -11.14332 -10.93395 -10.82223 -10.80776 -10.37751 -10.24562 -10.03512 -9.77675 -9.61276 -8.76929 -8.63394 -8.59934 -8.50123 -7.76924 -6.36709 -4.46871 1.02430 1.59862 1.74487 1.88248 2.06841 2.92995 2.98366 3.11127 3.18885 3.20230 3.41771 3.66916 4.05336 4.18006 4.40094 4.65256 4.92767 4.96903 5.07033 5.08279 5.10165 5.17935 5.30044 5.31092 5.40246 5.49090 5.50869 5.54057 5.58957 5.66129 5.68844 5.71492 5.81760 5.97498 6.03809 6.07314 6.33390 6.41946 6.49814 6.67440 6.82241 6.84944 6.97712 7.11254 7.23369 7.43998 7.53383 7.56362 7.79977 7.91199 7.94936 8.50484 8.65739 9.22170 10.69865 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.007489 B = 0.003873 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3737.817487 B = 7228.222163 C = 9612.512518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.102 4.102 3 C -0.113 4.113 4 C -0.117 4.117 5 C 0.168 3.832 6 N -0.553 5.553 7 C 0.235 3.765 8 C -0.548 4.548 9 H 0.063 0.937 10 C 0.070 3.930 11 N -0.885 5.885 12 Si 0.898 3.102 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.274 1.274 16 C 0.508 3.492 17 O -0.548 6.548 18 C 0.095 3.905 19 N -0.515 5.515 20 C 0.195 3.805 21 C -0.311 4.311 22 C 0.551 3.449 23 O -0.528 6.528 24 N -0.557 5.557 25 C 0.081 3.919 26 C 0.698 3.302 27 O -0.535 6.535 28 C -0.101 4.101 29 C -0.113 4.113 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.269 0.731 38 H 0.133 0.867 39 H 0.143 0.857 40 H 0.178 0.822 41 H 0.170 0.830 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.119 0.881 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.180 -2.992 7.383 8.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.102 4.102 3 C -0.131 4.131 4 C -0.137 4.137 5 C 0.077 3.923 6 N -0.280 5.280 7 C 0.116 3.884 8 C -0.586 4.586 9 H 0.081 0.919 10 C -0.135 4.135 11 N -0.522 5.522 12 Si 0.725 3.275 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.200 1.200 16 C 0.295 3.705 17 O -0.426 6.426 18 C -0.029 4.029 19 N -0.233 5.233 20 C 0.071 3.929 21 C -0.337 4.337 22 C 0.348 3.652 23 O -0.405 6.405 24 N -0.301 5.301 25 C -0.060 4.060 26 C 0.401 3.599 27 O -0.407 6.407 28 C -0.121 4.121 29 C -0.132 4.132 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.151 0.849 39 H 0.161 0.839 40 H 0.195 0.805 41 H 0.187 0.813 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.137 0.863 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.209 -2.414 8.199 9.129 hybrid contribution 0.201 -0.749 -1.065 1.317 sum -3.008 -3.162 7.134 8.363 Atomic orbital electron populations 1.20724 0.91556 1.02292 1.01957 1.19821 0.95757 0.93228 1.01425 1.20786 0.93458 0.97372 1.01514 1.21195 0.94223 0.97502 1.00786 1.17497 0.83069 0.92968 0.98728 1.45842 1.03588 1.61847 1.16757 1.19679 0.91877 0.95926 0.80894 1.21353 1.37901 0.95028 1.04356 0.91863 1.24931 0.94988 0.96004 0.97534 1.69899 1.37072 1.20644 1.24618 0.86549 0.78609 0.82062 0.80252 1.20011 1.21020 1.19950 1.20557 0.89615 0.77386 0.82909 1.90699 1.70039 1.50217 1.31656 1.21916 0.93031 1.05851 0.82092 1.44480 1.58536 1.05606 1.14635 1.22413 0.88138 0.83980 0.98403 1.21797 1.16995 1.01669 0.93283 1.17368 0.77638 0.81125 0.89033 1.90842 1.45659 1.78095 1.25933 1.46325 1.60032 1.09855 1.13875 1.21856 1.02542 0.92227 0.89386 1.15799 0.78585 0.85473 0.80028 1.91012 1.56603 1.13303 1.79800 1.21162 0.94040 0.97474 0.99418 1.20807 0.93555 0.97345 1.01466 0.91478 0.91905 0.91895 0.86178 0.85947 0.93819 0.93904 0.92136 0.84884 0.83902 0.80460 0.81266 0.91030 0.89050 0.89119 0.86273 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 36.00 0.36 -0.78 16 2 C -0.10 -1.45 5.88 -104.59 -0.62 -2.06 16 3 C -0.11 -1.68 9.69 -39.61 -0.38 -2.07 16 4 C -0.12 -2.05 9.69 -39.39 -0.38 -2.44 16 5 C 0.17 3.22 4.74 -83.70 -0.40 2.83 16 6 N -0.55 -10.87 2.50 -114.74 -0.29 -11.15 16 7 C 0.23 5.04 4.88 -5.19 -0.03 5.02 16 8 C -0.55 -12.63 9.16 -34.44 -0.32 -12.95 16 9 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 10 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -22.52 13.29 55.43 0.74 -21.78 16 12 Si 0.90 18.74 29.54 -169.99 -5.02 13.72 16 13 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 14 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 15 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 16 C 0.51 9.61 7.59 -10.99 -0.08 9.53 16 17 O -0.55 -11.59 16.20 5.55 0.09 -11.50 16 18 C 0.10 1.50 4.48 -5.20 -0.02 1.48 16 19 N -0.51 -7.63 2.10 -122.83 -0.26 -7.89 16 20 C 0.20 2.28 10.38 -16.46 -0.17 2.11 16 21 C -0.31 -3.74 10.00 -39.45 -0.39 -4.14 16 22 C 0.55 8.26 7.44 -14.96 -0.11 8.15 16 23 O -0.53 -9.01 16.70 5.11 0.09 -8.93 16 24 N -0.56 -8.36 2.96 -131.49 -0.39 -8.75 16 25 C 0.08 1.00 10.13 59.85 0.61 1.61 16 26 C 0.70 11.53 8.11 -87.29 -0.71 10.82 16 27 O -0.53 -10.10 15.35 5.28 0.08 -10.02 16 28 C -0.10 -1.80 9.56 -39.39 -0.38 -2.18 16 29 C -0.11 -1.71 9.69 -39.61 -0.38 -2.10 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 32 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 34 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 35 H 0.04 1.02 7.86 -51.93 -0.41 0.62 16 36 H 0.04 0.92 6.47 -51.93 -0.34 0.59 16 37 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 38 H 0.13 2.17 6.49 -51.93 -0.34 1.84 16 39 H 0.14 1.99 7.80 -51.93 -0.41 1.58 16 40 H 0.18 1.44 8.06 -52.49 -0.42 1.02 16 41 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.09 1.01 7.42 -51.93 -0.39 0.63 16 44 H 0.09 1.05 7.39 -51.93 -0.38 0.67 16 45 H 0.12 2.08 8.06 -52.49 -0.42 1.65 16 46 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 397.22 15.07 5.99 5.99 Total: -1.00 -31.79 397.22 -8.50 -40.29 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.02 Total: 5.61 kcal Atomic # 6 Polarization: 17.91 SS G_CDS: -3.50 Total: 14.41 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: -0.20 Total: -49.57 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: 0.26 Total: -30.44 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.79 -8.50 -40.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069519913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.227 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds