Wall clock time and date at job start Tue Mar 31 2020 05:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38286 * 119.92880 * 2 1 4 4 C 1.38111 * 120.07047 * 179.97438 * 3 2 1 5 5 C 1.38877 * 119.93252 * 0.02562 * 4 3 2 6 6 N 1.39918 * 120.07080 * 179.97438 * 5 4 3 7 7 C 1.46501 * 120.00256 * 292.12118 * 6 5 4 8 8 C 1.50698 * 109.47062 * 270.00377 * 7 6 5 9 9 H 1.07991 * 120.00309 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99429 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00564 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99670 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47389 * 59.99974 * 12 10 8 14 14 H 1.48501 * 109.47222 * 180.02562 * 12 10 8 15 15 H 1.48510 * 109.47389 * 299.99848 * 12 10 8 16 16 C 1.34779 * 119.99985 * 112.12607 * 6 5 4 17 17 O 1.21286 * 119.99867 * 355.26637 * 16 6 5 18 18 C 1.50692 * 120.00152 * 175.26304 * 16 6 5 19 19 N 1.46497 * 109.47265 * 179.97438 * 18 16 6 20 20 C 1.36840 * 119.69013 * 89.99895 * 19 18 16 21 21 C 1.35025 * 119.68568 * 180.25216 * 20 19 18 22 22 C 1.41584 * 119.11075 * 359.47491 * 21 20 19 23 23 O 1.21783 * 120.30394 * 180.28651 * 22 21 20 24 24 N 1.34835 * 119.38577 * 0.56949 * 22 21 20 25 25 C 1.46500 * 119.86676 * 179.71641 * 24 22 21 26 26 C 1.34545 * 119.69422 * 270.02605 * 19 18 16 27 27 O 1.21592 * 119.52892 * 359.97438 * 26 19 18 28 28 C 1.38871 * 119.85487 * 0.26960 * 5 4 3 29 29 C 1.38120 * 119.93171 * 359.42565 * 28 5 4 30 30 H 1.08995 * 109.47476 * 89.99893 * 1 2 3 31 31 H 1.09004 * 109.46827 * 210.00061 * 1 2 3 32 32 H 1.09001 * 109.47047 * 329.99223 * 1 2 3 33 33 H 1.07998 * 119.96531 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.03794 * 179.97438 * 4 3 2 35 35 H 1.08995 * 109.46975 * 30.00305 * 7 6 5 36 36 H 1.08998 * 109.47123 * 150.00438 * 7 6 5 37 37 H 0.97002 * 120.00327 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.47629 * 60.00294 * 18 16 6 39 39 H 1.08997 * 109.47736 * 300.00256 * 18 16 6 40 40 H 1.07997 * 120.15842 * 359.97438 * 20 19 18 41 41 H 1.07999 * 120.44252 * 179.75293 * 21 20 19 42 42 H 1.09000 * 109.47311 * 269.97759 * 25 24 22 43 43 H 1.08997 * 109.47356 * 29.98028 * 25 24 22 44 44 H 1.09001 * 109.47110 * 149.97988 * 25 24 22 45 45 H 1.08001 * 120.03642 * 179.72845 * 28 5 4 46 46 H 1.07996 * 119.96559 * 180.29942 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 0.0005 5 6 4.2739 0.0001 0.0005 6 7 5.6731 0.0001 0.0005 7 6 6.4056 0.4779 -1.1748 8 6 6.6568 -0.6744 -2.1128 9 1 6.3063 -1.6638 -1.8588 10 6 7.3342 -0.4655 -3.2955 11 7 7.7606 0.7394 -3.6051 12 14 7.6449 -1.8938 -4.4586 13 1 6.3472 -2.4752 -4.8864 14 1 8.3875 -1.4095 -5.6499 15 1 8.4477 -2.9323 -3.7640 16 6 6.3470 -0.4394 1.0818 17 8 5.7437 -0.7541 2.0858 18 6 7.8501 -0.5400 1.0433 19 7 8.3393 -1.0390 2.3309 20 6 8.4806 -2.3860 2.5264 21 6 8.9266 -2.8460 3.7149 22 6 9.2507 -1.9189 4.7347 23 8 9.6598 -2.3097 5.8131 24 7 9.0967 -0.5996 4.5028 25 6 9.4229 0.3687 5.5527 26 6 8.6448 -0.1687 3.3104 27 8 8.5117 1.0241 3.1153 28 6 3.5781 -1.2017 -0.0057 29 6 2.1969 -1.1984 0.0002 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5140 33 1 1.6552 2.1327 -0.0004 34 1 4.1163 2.1382 0.0001 35 1 5.8166 1.2400 -1.6850 36 1 7.3580 0.9048 -0.8605 37 1 8.2375 0.8863 -4.4370 38 1 8.2754 0.4449 0.8505 39 1 8.1482 -1.2260 0.2505 40 1 8.2323 -3.0780 1.7353 41 1 9.0390 -3.9068 3.8838 42 1 8.5380 0.5575 6.1605 43 1 10.2174 -0.0318 6.1822 44 1 9.7559 1.3009 5.0964 45 1 4.1163 -2.1380 -0.0101 46 1 1.6552 -2.1327 0.0002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069519913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:58 Heat of formation + Delta-G solvation = -48.640714 kcal Electronic energy + Delta-G solvation = -32081.703207 eV Core-core repulsion = 27743.999451 eV Total energy + Delta-G solvation = -4337.703756 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.152 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.48526 -41.53713 -40.24098 -39.53928 -38.25388 -36.93728 -36.36835 -34.72219 -33.35514 -32.60082 -31.89024 -29.69862 -29.34002 -28.77760 -26.87612 -25.13173 -24.85707 -24.59266 -23.54829 -22.71879 -20.74253 -20.33506 -18.98802 -18.70701 -18.55256 -18.19342 -18.02667 -17.52191 -16.77062 -16.67809 -16.37016 -16.24284 -16.15106 -15.68562 -15.50747 -15.09334 -14.82228 -14.59738 -14.49244 -14.45696 -14.35827 -14.29950 -14.16408 -13.54893 -13.35894 -13.29016 -13.07212 -13.00510 -12.88708 -12.77682 -12.57551 -12.45372 -12.11819 -12.09741 -12.01736 -11.72219 -11.45813 -11.12547 -10.94500 -10.59050 -10.07288 -9.86154 -9.65534 -9.15309 -8.19562 -6.35653 -0.00295 0.33382 0.48366 0.68307 0.84548 1.44553 1.47828 1.51703 1.57064 1.82478 2.11810 2.39681 2.46841 2.80395 3.12356 3.44322 3.50718 3.62931 3.90567 3.95973 4.05086 4.08544 4.12890 4.23982 4.30528 4.34208 4.47931 4.51034 4.52483 4.56112 4.58863 4.67156 4.83209 4.90282 4.91456 5.04506 5.11581 5.15976 5.20415 5.34964 5.39640 5.54623 5.67528 5.69070 5.75322 6.00240 6.07040 6.12237 6.31809 6.37361 6.73404 6.75523 7.09090 7.37370 8.86164 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.007489 B = 0.003873 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3737.817487 B = 7228.222163 C = 9612.512518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C -0.114 4.114 4 C -0.139 4.139 5 C 0.129 3.871 6 N -0.552 5.552 7 C 0.250 3.750 8 C -0.545 4.545 9 H 0.065 0.935 10 C 0.027 3.973 11 N -0.919 5.919 12 Si 0.956 3.044 13 H -0.278 1.278 14 H -0.289 1.289 15 H -0.258 1.258 16 C 0.506 3.494 17 O -0.573 6.573 18 C 0.105 3.895 19 N -0.516 5.516 20 C 0.196 3.804 21 C -0.305 4.305 22 C 0.541 3.459 23 O -0.554 6.554 24 N -0.559 5.559 25 C 0.076 3.924 26 C 0.691 3.309 27 O -0.568 6.568 28 C -0.119 4.119 29 C -0.115 4.115 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.148 0.852 34 H 0.115 0.885 35 H 0.017 0.983 36 H 0.039 0.961 37 H 0.268 0.732 38 H 0.124 0.876 39 H 0.165 0.835 40 H 0.219 0.781 41 H 0.200 0.800 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.115 0.885 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.539 -5.013 7.012 9.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.098 4.098 3 C -0.132 4.132 4 C -0.159 4.159 5 C 0.038 3.962 6 N -0.279 5.279 7 C 0.130 3.870 8 C -0.583 4.583 9 H 0.084 0.916 10 C -0.174 4.174 11 N -0.558 5.558 12 Si 0.781 3.219 13 H -0.203 1.203 14 H -0.215 1.215 15 H -0.182 1.182 16 C 0.294 3.706 17 O -0.453 6.453 18 C -0.019 4.019 19 N -0.234 5.234 20 C 0.073 3.927 21 C -0.331 4.331 22 C 0.341 3.659 23 O -0.433 6.433 24 N -0.302 5.302 25 C -0.065 4.065 26 C 0.395 3.605 27 O -0.444 6.444 28 C -0.139 4.139 29 C -0.133 4.133 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.166 0.834 34 H 0.134 0.866 35 H 0.035 0.965 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.142 0.858 39 H 0.183 0.817 40 H 0.236 0.764 41 H 0.217 0.783 42 H 0.095 0.905 43 H 0.121 0.879 44 H 0.112 0.888 45 H 0.133 0.867 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.572 -4.468 7.846 10.121 hybrid contribution 0.506 -0.073 -0.899 1.034 sum -4.066 -4.541 6.947 9.242 Atomic orbital electron populations 1.20802 0.88358 1.03847 1.03248 1.20321 0.98021 0.92392 0.99059 1.21158 0.92500 0.99215 1.00352 1.21351 0.95670 0.96879 1.01972 1.17863 0.82907 0.94212 1.01200 1.45765 1.04159 1.61733 1.16293 1.19331 0.91306 0.94989 0.81340 1.21537 1.37056 0.95282 1.04449 0.91646 1.25627 0.94900 0.97935 0.98944 1.70011 1.38181 1.22472 1.25103 0.85630 0.78279 0.79676 0.78280 1.20332 1.21514 1.18180 1.21017 0.90736 0.76611 0.82189 1.90668 1.70915 1.51459 1.32257 1.21829 0.90766 1.06154 0.83189 1.44496 1.58213 1.06764 1.13879 1.23042 0.87270 0.82879 0.99516 1.22080 1.16201 1.02476 0.92337 1.17900 0.77313 0.81275 0.89437 1.90829 1.47132 1.78309 1.27057 1.46485 1.59414 1.10569 1.13750 1.22020 1.03183 0.92144 0.89114 1.16017 0.78552 0.85368 0.80590 1.90983 1.58187 1.14751 1.80456 1.21282 0.95385 0.96731 1.00486 1.21188 0.92655 0.99154 1.00305 0.90121 0.90379 0.90432 0.83420 0.86648 0.96462 0.94281 0.92287 0.85838 0.81719 0.76444 0.78343 0.90547 0.87894 0.88812 0.86722 0.83411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 10.01 71.23 0.71 -1.11 16 2 C -0.10 -2.55 5.88 -19.84 -0.12 -2.67 16 3 C -0.11 -3.27 9.69 22.25 0.22 -3.06 16 4 C -0.14 -4.98 9.69 22.39 0.22 -4.76 16 5 C 0.13 5.03 4.74 38.15 0.18 5.21 16 6 N -0.55 -22.29 2.50 -635.32 -1.59 -23.88 16 7 C 0.25 11.06 4.88 85.63 0.42 11.48 16 8 C -0.54 -25.12 9.16 25.60 0.23 -24.89 16 9 H 0.07 2.95 7.81 -2.92 -0.02 2.93 16 10 C 0.03 1.29 5.46 84.66 0.46 1.76 16 11 N -0.92 -47.30 13.29 21.45 0.28 -47.01 16 12 Si 0.96 37.71 29.54 68.60 2.03 39.73 16 13 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 14 H -0.29 -11.56 7.11 99.48 0.71 -10.86 16 15 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 16 C 0.51 19.39 7.59 87.65 0.67 20.06 16 17 O -0.57 -24.50 16.20 -3.05 -0.05 -24.55 16 18 C 0.11 3.30 4.48 85.63 0.38 3.69 16 19 N -0.52 -14.95 2.10 -660.92 -1.39 -16.33 16 20 C 0.20 4.14 10.38 83.17 0.86 5.01 16 21 C -0.31 -6.70 10.00 22.36 0.22 -6.48 16 22 C 0.54 15.78 7.44 85.06 0.63 16.41 16 23 O -0.55 -18.54 16.70 -4.61 -0.08 -18.62 16 24 N -0.56 -16.75 2.96 -806.43 -2.39 -19.14 16 25 C 0.08 1.89 10.13 127.77 1.29 3.18 16 26 C 0.69 23.03 8.11 179.18 1.45 24.48 16 27 O -0.57 -22.15 15.35 -4.01 -0.06 -22.21 16 28 C -0.12 -4.21 9.56 22.39 0.21 -4.00 16 29 C -0.11 -3.27 9.69 22.25 0.22 -3.05 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.14 8.08 -2.38 -0.02 1.12 16 32 H 0.08 1.14 8.08 -2.39 -0.02 1.12 16 33 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 34 H 0.12 4.11 8.06 -2.91 -0.02 4.08 16 35 H 0.02 0.85 7.86 -2.39 -0.02 0.83 16 36 H 0.04 1.75 6.47 -2.39 -0.02 1.74 16 37 H 0.27 13.24 8.31 -92.71 -0.77 12.47 16 38 H 0.12 4.16 6.49 -2.39 -0.02 4.15 16 39 H 0.17 4.39 7.80 -2.39 -0.02 4.37 16 40 H 0.22 2.73 8.06 -2.91 -0.02 2.71 16 41 H 0.20 3.13 8.06 -2.91 -0.02 3.10 16 42 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.10 2.28 7.42 -2.39 -0.02 2.27 16 44 H 0.09 2.24 7.39 -2.39 -0.02 2.23 16 45 H 0.11 4.00 8.06 -2.91 -0.02 3.98 16 46 H 0.15 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -70.09 397.22 6.03 -64.06 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 1.01 Total: 26.70 kcal Atomic # 6 Polarization: 33.00 SS G_CDS: 8.27 Total: 41.27 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -5.08 Total: -106.37 kcal Atomic # 8 Polarization: -65.20 SS G_CDS: -0.19 Total: -65.38 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.73 kcal Total: -70.09 6.03 -64.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069519913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.417 kcal (2) G-P(sol) polarization free energy of solvation -70.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds