Wall clock time and date at job start Tue Mar 31 2020 05:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35388 * 126.51870 * 2 1 4 4 N 1.30829 * 108.78543 * 179.97438 * 3 2 1 5 5 C 1.33375 * 109.13780 * 359.97438 * 4 3 2 6 6 C 1.35253 * 107.93855 * 0.06787 * 5 4 3 7 7 C 1.50697 * 123.49058 * 179.88197 * 6 5 4 8 8 C 1.53549 * 107.83621 * 344.25113 * 7 6 5 9 9 N 1.46951 * 109.58032 * 48.91627 * 8 7 6 10 10 C 1.46901 * 111.00363 * 164.39578 * 9 8 7 11 11 C 1.52995 * 109.46735 * 288.80850 * 10 9 8 12 12 H 1.09001 * 109.47243 * 59.36841 * 11 10 9 13 13 O 1.42893 * 109.47574 * 299.36611 * 11 10 9 14 14 C 1.53006 * 109.46980 * 179.36440 * 11 10 9 15 15 O 1.42899 * 109.47156 * 185.00077 * 14 11 10 16 16 C 1.35675 * 116.99912 * 179.97438 * 15 14 11 17 17 C 1.39318 * 119.81463 * 359.72886 * 16 15 14 18 18 C 1.36441 * 120.18088 * 179.75815 * 17 16 15 19 19 C 1.40834 * 119.81235 * 0.51340 * 18 17 16 20 20 C 1.41214 * 120.18008 * 179.71670 * 19 18 17 21 21 H 1.08002 * 119.99998 * 156.18858 * 20 19 18 22 22 C 1.39890 * 120.00013 * 336.19776 * 20 19 18 23 23 N 1.30878 * 119.99883 * 341.20624 * 22 20 19 24 24 Si 1.86800 * 119.99959 * 161.21488 * 22 20 19 25 25 H 1.48496 * 109.47091 * 94.80311 * 24 22 20 26 26 H 1.48501 * 109.46939 * 214.80060 * 24 22 20 27 27 H 1.48500 * 109.47108 * 334.79808 * 24 22 20 28 28 C 1.40833 * 119.63906 * 359.74230 * 19 18 17 29 29 C 1.36437 * 119.81510 * 359.97438 * 28 19 18 30 30 C 1.47282 * 111.50991 * 288.72170 * 9 8 7 31 31 H 1.08996 * 109.46963 * 269.97598 * 1 2 3 32 32 H 1.09003 * 109.46830 * 29.97372 * 1 2 3 33 33 H 1.08993 * 109.47225 * 149.97752 * 1 2 3 34 34 H 1.08002 * 125.60853 * 359.97438 * 3 2 1 35 35 H 1.09002 * 109.79027 * 103.85065 * 7 6 5 36 36 H 1.09001 * 109.78564 * 224.62204 * 7 6 5 37 37 H 1.09006 * 109.45864 * 288.87935 * 8 7 6 38 38 H 1.08996 * 109.45578 * 168.94615 * 8 7 6 39 39 H 1.08999 * 109.46670 * 168.81159 * 10 9 8 40 40 H 1.08993 * 109.46963 * 48.81022 * 10 9 8 41 41 H 0.96705 * 114.00139 * 300.00338 * 13 11 10 42 42 H 1.09001 * 109.46815 * 305.00474 * 14 11 10 43 43 H 1.08998 * 109.46596 * 65.00140 * 14 11 10 44 44 H 1.07997 * 119.90971 * 0.02562 * 17 16 15 45 45 H 1.07998 * 120.09188 * 180.25153 * 18 17 16 46 46 H 0.97004 * 119.99731 * 179.97438 * 23 22 20 47 47 H 1.07999 * 120.09028 * 179.97438 * 28 19 18 48 48 H 1.08000 * 119.90753 * 179.97438 * 29 28 19 49 49 H 1.09003 * 109.69743 * 171.09346 * 30 9 8 50 50 H 1.08995 * 109.69939 * 291.64976 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2707 1.0881 0.0000 4 7 3.5169 0.6896 0.0006 5 6 3.5495 -0.6438 0.0015 6 6 2.2734 -1.0918 0.0000 7 6 1.9050 -2.5530 -0.0022 8 6 3.1545 -3.3524 -0.3990 9 7 4.3010 -2.9049 0.4039 10 6 5.4055 -3.8706 0.3286 11 6 5.0320 -5.1342 1.1062 12 1 4.1275 -5.5687 0.6804 13 8 4.8005 -4.7997 2.4760 14 6 6.1758 -6.1462 1.0145 15 8 5.7816 -7.3686 1.6408 16 6 6.6880 -8.3782 1.6462 17 6 7.9344 -8.1932 1.0518 18 6 8.8533 -9.2018 1.0572 19 6 8.5350 -10.4359 1.6564 20 6 9.4780 -11.4870 1.6612 21 1 9.4196 -12.2615 2.4116 22 6 10.4880 -11.5249 0.6940 23 7 10.3633 -10.8329 -0.4098 24 14 12.0146 -12.5634 0.9780 25 1 11.8357 -13.8915 0.3384 26 1 13.1936 -11.8829 0.3845 27 1 12.2281 -12.7410 2.4368 28 6 7.2708 -10.6162 2.2503 29 6 6.3653 -9.5957 2.2414 30 6 4.7480 -1.5597 0.0043 31 1 -0.3633 -0.0004 1.0276 32 1 -0.3633 0.8903 -0.5134 33 1 -0.3633 -0.8897 -0.5141 34 1 1.9393 2.1160 -0.0004 35 1 1.5760 -2.8521 0.9930 36 1 1.1075 -2.7314 -0.7234 37 1 3.3672 -3.1927 -1.4561 38 1 2.9786 -4.4132 -0.2208 39 1 6.3035 -3.4298 0.7615 40 1 5.5930 -4.1275 -0.7138 41 1 5.5649 -4.4072 2.9196 42 1 6.4116 -6.3341 -0.0330 43 1 7.0556 -5.7467 1.5190 44 1 8.1754 -7.2476 0.5893 45 1 9.8206 -9.0555 0.5996 46 1 11.0639 -10.8589 -1.0803 47 1 7.0188 -11.5597 2.7114 48 1 5.3953 -9.7325 2.6960 49 1 5.4891 -1.1927 0.7144 50 1 5.1836 -1.5987 -0.9940 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069653144.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:34 Heat of formation + Delta-G solvation = 5.853880 kcal Electronic energy + Delta-G solvation = -30562.837703 eV Core-core repulsion = 26363.330105 eV Total energy + Delta-G solvation = -4199.507599 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.57169 -39.24494 -38.41057 -36.83862 -35.83364 -34.59733 -33.33501 -32.59419 -30.59610 -29.67719 -29.50804 -28.82245 -27.67748 -26.00057 -24.66286 -24.02921 -23.06005 -21.58192 -21.11856 -20.77257 -20.34150 -19.23992 -17.41340 -17.33081 -16.93240 -16.49154 -16.32456 -16.25048 -15.70157 -15.19111 -15.06758 -14.81457 -14.42498 -14.18870 -14.05867 -13.93380 -13.86062 -13.62350 -13.28817 -13.06582 -12.95275 -12.68840 -12.41665 -12.30097 -12.13190 -12.00352 -11.80625 -11.62131 -11.47936 -11.40006 -11.10713 -11.01395 -10.73669 -10.54382 -10.14135 -9.98968 -9.87560 -9.82804 -9.78457 -9.35590 -8.99422 -8.57712 -8.31769 -7.64518 -7.01116 -6.73486 -4.24218 1.72694 2.41318 2.77241 2.83120 2.97468 3.08140 3.12415 3.22372 3.30791 3.95028 4.07286 4.19163 4.23496 4.34932 4.54146 4.58443 4.60576 4.62072 4.84286 4.85684 4.88003 4.99030 5.03824 5.16888 5.20777 5.27577 5.34704 5.37705 5.49004 5.52821 5.59963 5.67350 5.70239 5.71549 6.04316 6.06394 6.11700 6.29635 6.41199 6.71434 6.72545 6.79481 6.90305 6.91822 7.07135 7.28668 7.42177 7.56726 7.82122 7.82587 7.91929 8.00905 8.16439 8.45643 8.65973 8.90548 9.00229 10.21063 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.028485 B = 0.001542 C = 0.001499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.727077 B =18148.685830 C =18679.745838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.453 5.453 3 C 0.168 3.832 4 N -0.481 5.481 5 C 0.001 3.999 6 C -0.015 4.015 7 C -0.034 4.034 8 C 0.058 3.942 9 N -0.526 5.526 10 C 0.027 3.973 11 C 0.119 3.881 12 H 0.103 0.897 13 O -0.539 6.539 14 C 0.038 3.962 15 O -0.318 6.318 16 C -0.010 4.010 17 C -0.174 4.174 18 C -0.136 4.136 19 C 0.087 3.913 20 C -0.463 4.463 21 H 0.077 0.923 22 C 0.075 3.925 23 N -0.799 5.799 24 Si 0.905 3.095 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.261 1.261 28 C -0.197 4.197 29 C -0.112 4.112 30 C 0.145 3.855 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.205 0.795 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.040 0.960 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.050 0.950 41 H 0.370 0.630 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.093 0.907 45 H 0.121 0.879 46 H 0.279 0.721 47 H 0.100 0.900 48 H 0.097 0.903 49 H 0.091 0.909 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.117 20.867 -2.844 26.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.135 5.135 3 C -0.113 4.113 4 N -0.199 5.199 5 C -0.130 4.130 6 C -0.132 4.132 7 C -0.073 4.073 8 C -0.070 4.070 9 N -0.251 5.251 10 C -0.101 4.101 11 C 0.059 3.941 12 H 0.121 0.879 13 O -0.343 6.343 14 C -0.040 4.040 15 O -0.234 6.234 16 C -0.053 4.053 17 C -0.193 4.193 18 C -0.155 4.155 19 C 0.084 3.916 20 C -0.493 4.493 21 H 0.095 0.905 22 C -0.141 4.141 23 N -0.426 5.426 24 Si 0.730 3.270 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.185 1.185 28 C -0.216 4.216 29 C -0.131 4.131 30 C 0.017 3.983 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.222 0.778 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.068 0.932 41 H 0.217 0.783 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.111 0.889 45 H 0.138 0.862 46 H 0.090 0.910 47 H 0.118 0.882 48 H 0.115 0.885 49 H 0.110 0.890 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.407 21.220 -2.649 26.954 hybrid contribution 0.962 -0.495 -0.989 1.466 sum -15.445 20.726 -3.638 26.103 Atomic orbital electron populations 1.22046 0.76528 1.04661 1.03800 1.44916 1.07496 1.06731 1.54384 1.24994 0.85055 0.93309 1.07931 1.69823 1.19546 1.11314 1.19173 1.20276 0.93349 0.90400 1.08960 1.20935 0.91070 0.90363 1.10788 1.20149 0.97717 0.86658 1.02782 1.22149 0.90220 0.99686 0.94994 1.61716 1.06850 1.01255 1.55233 1.22700 0.94039 0.93405 0.99943 1.21836 0.98276 0.90706 0.83331 0.87930 1.86620 1.41307 1.83748 1.22602 1.23124 0.97169 0.85869 0.97815 1.85858 1.40946 1.20426 1.76131 1.18593 0.90182 0.88993 1.07571 1.20598 0.94626 0.99404 1.04675 1.20936 0.99078 0.92134 1.03351 1.17598 0.90993 0.92414 0.90568 1.19468 1.09411 1.08507 1.11883 0.90491 1.25875 0.99193 0.95267 0.93792 1.69848 1.32446 1.35181 1.05077 0.86349 0.80737 0.79990 0.79937 1.19652 1.20128 1.18450 1.20592 0.94279 0.97572 1.09198 1.19613 0.99129 0.91576 1.02741 1.20266 0.92808 0.85660 0.99600 0.90313 0.89354 0.89632 0.77822 0.89425 0.90726 0.94208 0.89264 0.89719 0.93163 0.78298 0.92479 0.92811 0.88899 0.86160 0.91028 0.88233 0.88499 0.89047 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.25 11.08 59.85 0.66 0.91 16 2 N -0.45 -3.66 3.14 -121.30 -0.38 -4.04 16 3 C 0.17 1.50 12.58 -89.78 -1.13 0.37 16 4 N -0.48 -5.96 11.24 -10.71 -0.12 -6.08 16 5 C 0.00 0.01 7.09 -82.92 -0.59 -0.58 16 6 C -0.02 -0.16 6.80 -81.88 -0.56 -0.71 16 7 C -0.03 -0.29 6.26 -27.60 -0.17 -0.46 16 8 C 0.06 0.53 5.38 -3.51 -0.02 0.51 16 9 N -0.53 -5.47 4.45 -235.27 -1.05 -6.52 16 10 C 0.03 0.27 4.64 -3.83 -0.02 0.26 16 11 C 0.12 1.48 3.25 -26.73 -0.09 1.39 16 12 H 0.10 1.32 6.49 -51.93 -0.34 0.98 16 13 O -0.54 -7.41 13.18 -40.09 -0.53 -7.94 16 14 C 0.04 0.57 4.36 37.16 0.16 0.74 16 15 O -0.32 -6.46 10.09 -23.58 -0.24 -6.70 16 16 C -0.01 -0.24 6.71 -38.78 -0.26 -0.50 16 17 C -0.17 -4.07 8.96 -39.83 -0.36 -4.42 16 18 C -0.14 -3.51 8.65 -39.25 -0.34 -3.85 16 19 C 0.09 2.32 5.58 -106.80 -0.60 1.72 16 20 C -0.46 -12.30 9.04 -37.83 -0.34 -12.64 16 21 H 0.08 1.96 7.91 -52.49 -0.42 1.55 16 22 C 0.08 1.89 5.12 -17.34 -0.09 1.81 16 23 N -0.80 -20.64 10.96 55.54 0.61 -20.03 16 24 Si 0.91 18.65 29.60 -169.99 -5.03 13.61 16 25 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 26 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 27 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 28 C -0.20 -4.88 9.74 -39.25 -0.38 -5.26 16 29 C -0.11 -2.63 9.92 -39.83 -0.40 -3.02 16 30 C 0.14 1.56 5.77 -4.70 -0.03 1.53 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.08 0.23 7.91 -51.93 -0.41 -0.18 16 34 H 0.21 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.46 8.01 -51.93 -0.42 0.05 16 37 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 38 H 0.09 0.80 6.24 -51.93 -0.32 0.47 16 39 H 0.08 0.76 8.00 -51.93 -0.42 0.35 16 40 H 0.05 0.47 8.06 -51.93 -0.42 0.05 16 41 H 0.37 4.00 9.05 45.56 0.41 4.41 16 42 H 0.06 0.85 7.63 -51.93 -0.40 0.46 16 43 H 0.05 0.79 7.66 -51.93 -0.40 0.39 16 44 H 0.09 1.91 6.27 -52.49 -0.33 1.58 16 45 H 0.12 3.20 6.14 -52.49 -0.32 2.88 16 46 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 47 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 48 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 49 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 405.54 15.07 6.11 6.11 Total: -1.00 -33.44 405.54 -11.86 -45.31 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -6.71 Total: 8.48 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -4.53 Total: -22.21 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: -0.94 Total: -36.67 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.77 Total: -14.63 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.44 -11.86 -45.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069653144.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.162 kcal (2) G-P(sol) polarization free energy of solvation -33.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds