Wall clock time and date at job start Tue Mar 31 2020 05:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35388 * 126.51870 * 2 1 4 4 N 1.30829 * 108.78543 * 179.97438 * 3 2 1 5 5 C 1.33375 * 109.13780 * 359.97438 * 4 3 2 6 6 C 1.35253 * 107.93855 * 0.06787 * 5 4 3 7 7 C 1.50697 * 123.49058 * 179.88197 * 6 5 4 8 8 C 1.53549 * 107.83621 * 344.25113 * 7 6 5 9 9 N 1.46951 * 109.58032 * 48.91627 * 8 7 6 10 10 C 1.46901 * 111.00363 * 164.39578 * 9 8 7 11 11 C 1.52995 * 109.46735 * 288.80850 * 10 9 8 12 12 H 1.09001 * 109.47243 * 59.36841 * 11 10 9 13 13 O 1.42893 * 109.47574 * 299.36611 * 11 10 9 14 14 C 1.53006 * 109.46980 * 179.36440 * 11 10 9 15 15 O 1.42899 * 109.47156 * 185.00077 * 14 11 10 16 16 C 1.35675 * 116.99912 * 179.97438 * 15 14 11 17 17 C 1.39318 * 119.81463 * 359.72886 * 16 15 14 18 18 C 1.36441 * 120.18088 * 179.75815 * 17 16 15 19 19 C 1.40834 * 119.81235 * 0.51340 * 18 17 16 20 20 C 1.41214 * 120.18008 * 179.71670 * 19 18 17 21 21 H 1.08002 * 119.99998 * 156.18858 * 20 19 18 22 22 C 1.39890 * 120.00013 * 336.19776 * 20 19 18 23 23 N 1.30878 * 119.99883 * 341.20624 * 22 20 19 24 24 Si 1.86800 * 119.99959 * 161.21488 * 22 20 19 25 25 H 1.48496 * 109.47091 * 94.80311 * 24 22 20 26 26 H 1.48501 * 109.46939 * 214.80060 * 24 22 20 27 27 H 1.48500 * 109.47108 * 334.79808 * 24 22 20 28 28 C 1.40833 * 119.63906 * 359.74230 * 19 18 17 29 29 C 1.36437 * 119.81510 * 359.97438 * 28 19 18 30 30 C 1.47282 * 111.50991 * 288.72170 * 9 8 7 31 31 H 1.08996 * 109.46963 * 269.97598 * 1 2 3 32 32 H 1.09003 * 109.46830 * 29.97372 * 1 2 3 33 33 H 1.08993 * 109.47225 * 149.97752 * 1 2 3 34 34 H 1.08002 * 125.60853 * 359.97438 * 3 2 1 35 35 H 1.09002 * 109.79027 * 103.85065 * 7 6 5 36 36 H 1.09001 * 109.78564 * 224.62204 * 7 6 5 37 37 H 1.09006 * 109.45864 * 288.87935 * 8 7 6 38 38 H 1.08996 * 109.45578 * 168.94615 * 8 7 6 39 39 H 1.08999 * 109.46670 * 168.81159 * 10 9 8 40 40 H 1.08993 * 109.46963 * 48.81022 * 10 9 8 41 41 H 0.96705 * 114.00139 * 300.00338 * 13 11 10 42 42 H 1.09001 * 109.46815 * 305.00474 * 14 11 10 43 43 H 1.08998 * 109.46596 * 65.00140 * 14 11 10 44 44 H 1.07997 * 119.90971 * 0.02562 * 17 16 15 45 45 H 1.07998 * 120.09188 * 180.25153 * 18 17 16 46 46 H 0.97004 * 119.99731 * 179.97438 * 23 22 20 47 47 H 1.07999 * 120.09028 * 179.97438 * 28 19 18 48 48 H 1.08000 * 119.90753 * 179.97438 * 29 28 19 49 49 H 1.09003 * 109.69743 * 171.09346 * 30 9 8 50 50 H 1.08995 * 109.69939 * 291.64976 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2707 1.0881 0.0000 4 7 3.5169 0.6896 0.0006 5 6 3.5495 -0.6438 0.0015 6 6 2.2734 -1.0918 0.0000 7 6 1.9050 -2.5530 -0.0022 8 6 3.1545 -3.3524 -0.3990 9 7 4.3010 -2.9049 0.4039 10 6 5.4055 -3.8706 0.3286 11 6 5.0320 -5.1342 1.1062 12 1 4.1275 -5.5687 0.6804 13 8 4.8005 -4.7997 2.4760 14 6 6.1758 -6.1462 1.0145 15 8 5.7816 -7.3686 1.6408 16 6 6.6880 -8.3782 1.6462 17 6 7.9344 -8.1932 1.0518 18 6 8.8533 -9.2018 1.0572 19 6 8.5350 -10.4359 1.6564 20 6 9.4780 -11.4870 1.6612 21 1 9.4196 -12.2615 2.4116 22 6 10.4880 -11.5249 0.6940 23 7 10.3633 -10.8329 -0.4098 24 14 12.0146 -12.5634 0.9780 25 1 11.8357 -13.8915 0.3384 26 1 13.1936 -11.8829 0.3845 27 1 12.2281 -12.7410 2.4368 28 6 7.2708 -10.6162 2.2503 29 6 6.3653 -9.5957 2.2414 30 6 4.7480 -1.5597 0.0043 31 1 -0.3633 -0.0004 1.0276 32 1 -0.3633 0.8903 -0.5134 33 1 -0.3633 -0.8897 -0.5141 34 1 1.9393 2.1160 -0.0004 35 1 1.5760 -2.8521 0.9930 36 1 1.1075 -2.7314 -0.7234 37 1 3.3672 -3.1927 -1.4561 38 1 2.9786 -4.4132 -0.2208 39 1 6.3035 -3.4298 0.7615 40 1 5.5930 -4.1275 -0.7138 41 1 5.5649 -4.4072 2.9196 42 1 6.4116 -6.3341 -0.0330 43 1 7.0556 -5.7467 1.5190 44 1 8.1754 -7.2476 0.5893 45 1 9.8206 -9.0555 0.5996 46 1 11.0639 -10.8589 -1.0803 47 1 7.0188 -11.5597 2.7114 48 1 5.3953 -9.7325 2.6960 49 1 5.4891 -1.1927 0.7144 50 1 5.1836 -1.5987 -0.9940 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069653144.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:33 Heat of formation + Delta-G solvation = -15.275886 kcal Electronic energy + Delta-G solvation = -30563.753959 eV Core-core repulsion = 26363.330105 eV Total energy + Delta-G solvation = -4200.423854 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.23659 -40.66189 -39.57188 -38.24850 -37.14623 -35.19711 -35.19010 -33.37081 -31.72241 -31.47174 -30.87449 -30.04708 -28.22207 -27.13463 -26.27916 -24.77600 -24.10685 -23.00150 -22.29099 -21.95349 -21.68984 -19.93967 -19.26021 -18.64610 -17.96907 -17.56621 -17.39149 -17.01351 -16.84744 -16.51519 -16.01573 -15.86106 -15.68370 -15.48835 -15.20881 -14.97934 -14.81099 -14.50453 -14.45546 -14.17145 -13.90137 -13.78609 -13.66865 -13.45603 -13.38853 -13.15514 -12.96343 -12.91064 -12.74185 -12.70617 -12.39065 -12.28451 -12.25999 -11.73847 -11.69084 -11.56980 -11.21239 -10.93938 -10.86428 -10.83842 -10.50112 -9.55222 -9.34501 -9.04801 -8.90190 -8.60046 -6.20927 0.95209 1.06000 1.06355 1.40271 1.50086 1.56497 1.90699 2.07495 2.23345 2.30914 2.72892 2.93009 3.50922 3.59843 3.71629 3.72930 3.87242 3.90768 4.00146 4.05009 4.06859 4.24058 4.30102 4.31870 4.39209 4.40900 4.41523 4.48323 4.50276 4.51727 4.66050 4.68514 4.72493 4.79870 4.88844 4.90517 5.00174 5.03628 5.08769 5.16309 5.38295 5.39386 5.53897 5.67518 5.69370 5.96922 5.99314 6.03245 6.07549 6.25418 6.33561 6.57416 6.80738 6.92026 6.96146 7.12260 7.12290 8.36623 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.028485 B = 0.001542 C = 0.001499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.727077 B =18148.685830 C =18679.745838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.451 5.451 3 C 0.169 3.831 4 N -0.526 5.526 5 C -0.034 4.034 6 C -0.023 4.023 7 C -0.029 4.029 8 C 0.055 3.945 9 N -0.533 5.533 10 C 0.035 3.965 11 C 0.131 3.869 12 H 0.100 0.900 13 O -0.556 6.556 14 C 0.030 3.970 15 O -0.327 6.327 16 C 0.000 4.000 17 C -0.175 4.175 18 C -0.156 4.156 19 C 0.053 3.947 20 C -0.500 4.500 21 H 0.075 0.925 22 C 0.035 3.965 23 N -0.830 5.830 24 Si 0.980 3.020 25 H -0.263 1.263 26 H -0.267 1.267 27 H -0.260 1.260 28 C -0.206 4.206 29 C -0.122 4.122 30 C 0.150 3.850 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.240 0.760 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.042 0.958 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.060 0.940 41 H 0.382 0.618 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.119 0.881 45 H 0.107 0.893 46 H 0.287 0.713 47 H 0.109 0.891 48 H 0.118 0.882 49 H 0.084 0.916 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.302 21.906 -3.193 28.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.132 5.132 3 C -0.112 4.112 4 N -0.245 5.245 5 C -0.164 4.164 6 C -0.141 4.141 7 C -0.067 4.067 8 C -0.073 4.073 9 N -0.258 5.258 10 C -0.093 4.093 11 C 0.071 3.929 12 H 0.117 0.883 13 O -0.362 6.362 14 C -0.047 4.047 15 O -0.243 6.243 16 C -0.044 4.044 17 C -0.194 4.194 18 C -0.176 4.176 19 C 0.051 3.949 20 C -0.530 4.530 21 H 0.093 0.907 22 C -0.179 4.179 23 N -0.457 5.457 24 Si 0.801 3.199 25 H -0.188 1.188 26 H -0.191 1.191 27 H -0.184 1.184 28 C -0.226 4.226 29 C -0.141 4.141 30 C 0.022 3.978 31 H 0.106 0.894 32 H 0.131 0.869 33 H 0.114 0.886 34 H 0.256 0.744 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.060 0.940 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.078 0.922 41 H 0.231 0.769 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.137 0.863 45 H 0.125 0.875 46 H 0.098 0.902 47 H 0.127 0.873 48 H 0.136 0.864 49 H 0.102 0.898 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.631 22.278 -2.996 28.568 hybrid contribution 1.150 -0.647 -0.876 1.584 sum -16.481 21.631 -3.872 27.468 Atomic orbital electron populations 1.22385 0.73786 1.06484 1.04949 1.45185 1.09110 1.05804 1.53122 1.25685 0.84479 0.94849 1.06177 1.69767 1.21758 1.11830 1.21111 1.20545 0.94459 0.90715 1.10711 1.21185 0.91024 0.91525 1.10367 1.20155 0.97911 0.85508 1.03150 1.22218 0.90209 0.99896 0.94995 1.61681 1.07200 1.01136 1.55776 1.22587 0.94343 0.92272 1.00090 1.21735 0.97002 0.90887 0.83258 0.88265 1.86587 1.42395 1.83917 1.23337 1.23477 0.98906 0.84388 0.97891 1.85856 1.40510 1.21390 1.76530 1.18705 0.90206 0.89589 1.05928 1.20815 0.94328 0.99887 1.04364 1.20915 0.99288 0.92865 1.04483 1.17964 0.92051 0.93119 0.91789 1.19714 1.11158 1.09144 1.12936 0.90676 1.26707 1.01722 0.96463 0.92983 1.69891 1.33617 1.36391 1.05780 0.85228 0.76607 0.78345 0.79738 1.18823 1.19095 1.18351 1.20785 0.94077 0.98532 1.09178 1.19891 0.99770 0.91637 1.02784 1.20169 0.92665 0.85741 0.99272 0.89438 0.86854 0.88623 0.74446 0.89923 0.88357 0.93997 0.89026 0.88749 0.92194 0.76942 0.91776 0.91869 0.86289 0.87534 0.90240 0.87341 0.86447 0.89777 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.27 11.08 127.77 1.42 1.68 16 2 N -0.45 -6.43 3.14 -537.68 -1.69 -8.12 16 3 C 0.17 2.78 12.58 180.06 2.27 5.05 16 4 N -0.53 -12.90 11.24 -187.79 -2.11 -15.01 16 5 C -0.03 -0.82 7.09 41.68 0.30 -0.52 16 6 C -0.02 -0.45 6.80 41.25 0.28 -0.17 16 7 C -0.03 -0.43 6.26 30.03 0.19 -0.25 16 8 C 0.06 0.94 5.38 86.48 0.47 1.40 16 9 N -0.53 -10.59 4.45 -898.25 -4.00 -14.59 16 10 C 0.04 0.65 4.64 86.30 0.40 1.05 16 11 C 0.13 3.06 3.25 30.59 0.10 3.16 16 12 H 0.10 2.40 6.49 -2.39 -0.02 2.39 16 13 O -0.56 -14.53 13.18 -144.34 -1.90 -16.43 16 14 C 0.03 0.86 4.36 71.98 0.31 1.18 16 15 O -0.33 -12.82 10.09 -85.28 -0.86 -13.68 16 16 C 0.00 -0.02 6.71 22.79 0.15 0.14 16 17 C -0.18 -8.12 8.96 22.11 0.20 -7.92 16 18 C -0.16 -8.24 8.65 22.49 0.19 -8.05 16 19 C 0.05 2.90 5.58 -21.28 -0.12 2.78 16 20 C -0.50 -27.24 9.04 23.40 0.21 -27.03 16 21 H 0.08 3.95 7.91 -2.91 -0.02 3.92 16 22 C 0.04 1.79 5.12 85.24 0.44 2.22 16 23 N -0.83 -43.52 10.96 21.82 0.24 -43.28 16 24 Si 0.98 38.37 29.60 68.60 2.03 40.40 16 25 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 26 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 27 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 28 C -0.21 -10.37 9.74 22.48 0.22 -10.15 16 29 C -0.12 -5.69 9.92 22.11 0.22 -5.47 16 30 C 0.15 3.20 5.77 85.53 0.49 3.70 16 31 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 33 H 0.10 0.23 7.91 -2.39 -0.02 0.21 16 34 H 0.24 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.10 0.98 8.01 -2.39 -0.02 0.97 16 37 H 0.04 0.70 8.08 -2.38 -0.02 0.68 16 38 H 0.09 1.50 6.24 -2.39 -0.01 1.49 16 39 H 0.09 1.56 8.00 -2.39 -0.02 1.54 16 40 H 0.06 1.01 8.06 -2.39 -0.02 0.99 16 41 H 0.38 7.74 9.05 -74.05 -0.67 7.07 16 42 H 0.06 1.79 7.63 -2.39 -0.02 1.77 16 43 H 0.06 1.72 7.66 -2.39 -0.02 1.71 16 44 H 0.12 4.75 6.27 -2.91 -0.02 4.73 16 45 H 0.11 5.84 6.14 -2.91 -0.02 5.82 16 46 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 47 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 48 H 0.12 4.89 8.06 -2.91 -0.02 4.86 16 49 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -73.44 405.54 -0.27 -73.71 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: 0.29 Total: 34.19 kcal Atomic # 6 Polarization: -44.92 SS G_CDS: 7.73 Total: -37.19 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -7.56 Total: -80.99 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -2.76 Total: -30.11 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.40 kcal Total: -73.44 -0.27 -73.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069653144.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.434 kcal (2) G-P(sol) polarization free energy of solvation -73.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds